ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6647

TrivialName: PA14_56710

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_56710

PAO1 Ortholog Locus:

Sequence Length: 2190

Protein Length: 729

Start: 5054764

Stop: 5052575

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: emb|CAC32349.1| (AL939118) putative bifunctional protein (histidine kinase and regulator) [Streptomyces coelicolor A3(2)] Identities = 170/690 (24%), Positives = 228/690 (33%), Gaps = 107/690 (15%)

Sequence:

GTGCAGGGTCAGGTCGTACACGTTGGCCGTCTCCAGGCGCGCCGTGCGGCGTTCGCCGCGGGCGTTGCGCGC
CTCGCCCCAGACCCAGGTGCGCAGACGCTCGCGGGCCGCCTGGTCGGGGCCGGAGATACGTTTGTCGACCTG
CCCCTTGAGCCAGTCCTGGACCCGTTGCCGACCGAGCAGCGGACGCAGTGGGTCGATCAGGCGCATGCTCAG
GGCCAGCAGCGGCGGCGCCGGCAGGTAGACCTCGATGTCCGGGATGCCGGTGCTGTAGTAGGCGGTGGCCAC
GTCGCCCCAGGGAATCGTCACGGCGTGCCGCAGGCCGCGGCCGAAATCGATGTCGCGGCGCTTGTAGCCCAG
CGGTACGTCGCGCAGGCGGCCATTCTCGCGGATCTTGCCGCCGAGCTTGAGGCCTTCGACGCTGGTCTTCGC
GGTTCCCGTCGAAAGCCCGCTGCCGGTGTCGAAGCCCAGCGCCAGCCGTTGCGCGTCCGGCAGCGCCTCCTT
CAGGCAGGCGGCCAGGCAATCGGTGGGGATCACATCGAAGCCGACGCCCGGGCAGACCACGATGCCGGCCTC
GCGGGCCTCGGCGTCGCCGGCGTGGGCCTGCTCGAACACCGCGATCTCTCCAGTGATATCCACGTAGTGGGT
GCCGGCGGCACGGCAGGCGGCGATCATCGGCGTGCTAGTGGCGGAGAACGGACCGGCGCAATGGGCCACCAC
CTTCACCTGGTCCAGGGCTTCGCGGCAGGCCTGCGGATCCCCCAGGTCGAAGACCCGGCACTCCAGCCCGAG
CTGGCTGCCGAGGGCGTGCAGGGCGGCCGGGTTGCGTCCGCCGAGGAGCGGCGTCAGGCCCTCGCGCTGCGC
CTGTTCAGCGACCAGCCGGCCGGTGTAGCCGTTGGCGCCGTAGATCATCCAGTGACTGGCCATGGTGCGTCT
CCCAGCGTGCAGGTGGCTTTCAGGTTAGACCTTGTAGCGCGCAGCGCCGCTTCTGTCGCCCAACGCAAGTCG
TGCCGGCGGCCCGCAAGGTCGTTGTTCTGGCATGCTGTGCCAGTGGTGGCGCGGCTCCGGGTTGCTAGAGTC
GCGGCACAAGAAGGACAACGGGAGAAACGCAATGCGGATTCTGGTAACGGGGGCGACGGGCTTCATCGGCGG
GCGTTTCGCTCGCTTCGCCCTGGAGCAGGGCCTGTCGGTACGGGTCAGCGGTCGTCGTGCGGACGCGGTGGA
GCATCTGGTGGCGCGGGGCGCCGAGTTCGTTCCCGGCGACCTCGCCGACCCGGCGCTGGTCCTGCGCCTCTG
CGAGGATGTCGAGGCGGTGGTGCATTGTGCCGGCGCGGTCGGAGTCTGGGGGCCGCGCGAACGCTTCCTGGC
GGCCAACGTCGGGCTTGCCGAGAGCGTCGTCGAGGCCTGCATGCGGCAAAAGGTGCGGCGCCTGGTGCATCT
GTCGTCGCCGTCGATCTATTTCGACGGGCGCGACCACCTGGACCTGAACGAAGAGTACGTACCCCGGCGTTT
TTCCGACCATTACGGGGCGACCAAGTACCAGGCCGAGCAACTGGTGCTCAGCGCCCGCGACCTGGGCCTGGA
AGTGTTGGCGCTGCGTCCGCGCTTCGTGGTCGGTGCCGGCGACACCAGCATCTTCCCGCGAATGATCCAGGC
CCACCGCAAGGGACGCCTGCGGATCCTCGGCAACGGCCTGAACCGGGTCGACTTCACCAGCGTGCACAATCT
CAACGACGCGCTGTTCAGTTGCCTGCTGGCCGGCGAGCCGGCGCTGGGCAAGGTCTACAACATCAGCAACGG
GCAGCCGGTACCGTTCTGGGATGCGGTCAACTACGTGATGCGCCAGCTCGAGCTGCCGCCGGTCGGCGGTCA
CCTGCCGTATGCCGTCGGCTATGGCCTGGCGGCGCTCAACGAAGGCGTCTGCCGGATCCTGCCGGGGCGTCC
GGAGCCGGTGCTGTTCCGCCTGGGCATGGCGGTGATGGCGAAGAACTTCACCCTGGACATCAACCGCGCCCG
CGAATACCTCGACTACGACCCGCGGGTCAGCCTGTGGACCGCGCTCGACGAGTTCTGCGCCTGGTGGCGCGC
CCAGGGACTCTGATCAGCCGCGTAGCGGGCCGGCGTATTGTCGGCTCGGCGCCTGCGCGGGCAACAGGGAAG
GTTCCGCCGGCGGCAGCGCGACCCCGCTGA

Translation:

MQGQVVHVGRLQARRAAFAAGVARLAPDPGAQTLAGRLVGAGDTFVDLPLEPVLDPLPTEQRTQWVDQAHAQ
GQQRRRRQVDLDVRDAGAVVGGGHVAPGNRHGVPQAAAEIDVAALVAQRYVAQAAILADLAAELEAFDAGLR
GSRRKPAAGVEAQRQPLRVRQRLLQAGGQAIGGDHIEADARADHDAGLAGLGVAGVGLLEHRDLSSDIHVVG
AGGTAGGDHRRASGGERTGAMGHHLHLVQGFAAGLRIPQVEDPALQPELAAEGVQGGRVASAEERRQALALR
LFSDQPAGVAVGAVDHPVTGHGASPSVQVAFRLDLVARSAASVAQRKSCRRPARSLFWHAVPVVARLRVARV
AAQEGQREKRNADSGNGGDGLHRRAFRSLRPGAGPVGTGQRSSCGRGGASGGAGRRVRSRRPRRPGAGPAPL
RGCRGGGALCRRGRSLGAARTLPGGQRRACRERRRGLHAAKGAAPGASVVAVDLFRRARPPGPERRVRTPAF
FRPLRGDQVPGRATGAQRPRPGPGSVGAASALRGRCRRHQHLPANDPGPPQGTPADPRQRPEPGRLHQRAQS
QRRAVQLPAGRRAGAGQGLQHQQRAAGTVLGCGQLRDAPARAAAGRRSPAVCRRLWPGGAQRRRLPDPAGAS
GAGAVPPGHGGDGEELHPGHQPRPRIPRLRPAGQPVDRARRVLRLVARPGTLISRVAGRRIVGSAPARATGK
VPPAAARPR*

AnnotationID:6648 GeneID:6647

AnnotatorUID: diggins

Modification Date/Time: 2004-03-15 12:12:28

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16416

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17111

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6647_cdd.html

URL:

ReferenceID:30390

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

GC ORFID: `49649`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `4318440`	Stop: `4316251`
Length: `2190`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGCAGGGTCAGGTCGTACACGTTGGCCGTCTCCAGGCGCGCCGTGCGGCGTTCGCCGCGGGCGTTGCGCGC CTCGCCCCAGACCCAGGTGCGCAGACGCTCGCGGGCCGCCTGGTCGGGGCCGGAGATACGTTTGTCGACCTG CCCCTTGAGCCAGTCCTGGACCCGTTGCCGACCGAGCAGCGGACGCAGTGGGTCGATCAGGCGCATGCTCAG GGCCAGCAGCGGCGGCGCCGGCAGGTAGACCTCGATGTCCGGGATGCCGGTGCTGTAGTAGGCGGTGGCCAC GTCGCCCCAGGGAATCGTCACGGCGTGCCGCAGGCCGCGGCCGAAATCGATGTCGCGGCGCTTGTAGCCCAG CGGTACGTCGCGCAGGCGGCCATTCTCGCGGATCTTGCCGCCGAGCTTGAGGCCTTCGACGCTGGTCTTCGC GGTTCCCGTCGAAAGCCCGCTGCCGGTGTCGAAGCCCAGCGCCAGCCGTTGCGCGTCCGGCAGCGCCTCCTT CAGGCAGGCGGCCAGGCAATCGGTGGGGATCACATCGAAGCCGACGCCCGGGCAGACCACGATGCCGGCCTC GCGGGCCTCGGCGTCGCCGGCGTGGGCCTGCTCGAACACCGCGATCTCTCCAGTGATATCCACGTAGTGGGT GCCGGCGGCACGGCAGGCGGCGATCATCGGCGTGCTAGTGGCGGAGAACGGACCGGCGCAATGGGCCACCAC CTTCACCTGGTCCAGGGCTTCGCGGCAGGCCTGCGGATCCCCCAGGTCGAAGACCCGGCACTCCAGCCCGAG CTGGCTGCCGAGGGCGTGCAGGGCGGCCGGGTTGCGTCCGCCGAGGAGCGGCGTCAGGCCCTCGCGCTGCGC CTGTTCAGCGACCAGCCGGCCGGTGTAGCCGTTGGCGCCGTAGATCATCCAGTGACTGGCCATGGTGCGTCT CCCAGCGTGCAGGTGGCTTTCAGGTTAGACCTTGTAGCGCGCAGCGCCGCTTCTGTCGCCCAACGCAAGTCG TGCCGGCGGCCCGCAAGGTCGTTGTTCTGGCATGCTGTGCCAGTGGTGGCGCGGCTCCGGGTTGCTAGAGTC GCGGCACAAGAAGGACAACGGGAGAAACGCAATGCGGATTCTGGTAACGGGGGCGACGGGCTTCATCGGCGG GCGTTTCGCTCGCTTCGCCCTGGAGCAGGGCCTGTCGGTACGGGTCAGCGGTCGTCGTGCGGACGCGGTGGA GCATCTGGTGGCGCGGGGCGCCGAGTTCGTTCCCGGCGACCTCGCCGACCCGGCGCTGGTCCTGCGCCTCTG CGAGGATGTCGAGGCGGTGGTGCATTGTGCCGGCGCGGTCGGAGTCTGGGGGCCGCGCGAACGCTTCCTGGC GGCCAACGTCGGGCTTGCCGAGAGCGTCGTCGAGGCCTGCATGCGGCAAAAGGTGCGGCGCCTGGTGCATCT GTCGTCGCCGTCGATCTATTTCGACGGGCGCGACCACCTGGACCTGAACGAAGAGTACGTACCCCGGCGTTT TTCCGACCATTACGGGGCGACCAAGTACCAGGCCGAGCAACTGGTGCTCAGCGCCCGCGACCTGGGCCTGGA AGTGTTGGCGCTGCGTCCGCGCTTCGTGGTCGGTGCCGGCGACACCAGCATCTTCCCGCGAATGATCCAGGC CCACCGCAAGGGACGCCTGCGGATCCTCGGCAACGGCCTGAACCGGGTCGACTTCACCAGCGTGCACAATCT CAACGACGCGCTGTTCAGTTGCCTGCTGGCCGGCGAGCCGGCGCTGGGCAAGGTCTACAACATCAGCAACGG GCAGCCGGTACCGTTCTGGGATGCGGTCAACTACGTGATGCGCCAGCTCGAGCTGCCGCCGGTCGGCGGTCA CCTGCCGTATGCCGTCGGCTATGGCCTGGCGGCGCTCAACGAAGGCGTCTGCCGGATCCTGCCGGGGCGTCC GGAGCCGGTGCTGTTCCGCCTGGGCATGGCGGTGATGGCGAAGAACTTCACCCTGGACATCAACCGCGCCCG CGAATACCTCGACTACGACCCGCGGGTCAGCCTGTGGACCGCGCTCGACGAGTTCTGCGCCTGGTGGCGCGC CCAGGGACTCTGATCAGCCGCGTAGCGGGCCGGCGTATTGTCGGCTCGGCGCCTGCGCGGGCAACAGGGAAG GTTCCGCCGGCGGCAGCGCGACCCCGCTGA