ViewGene

Locus Name:
GeneID:
Location:

GeneID:6638
TrivialName: PA14_56400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56400
PAO1 Ortholog Locus:
Sequence Length:1332
Protein Length:443
Start: 5030192
Stop: 5031523
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAC46447.1| (AL591788) HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Identities = 76/305 (24%), Positives = 122/305 (40%), Gaps = 27/305 (8%)
Sequence:
ATGCAGGGCGAACAGCGACAGCGAGGCGGCCCCCAGGCGCGGCGACCAGTGGCGGACGAAAGCGCTCTTCGG
GTCGGCGGGCAGCGCGCAAAGGCACACCAGCAGCAACTGGGCCGGCAGCAGCAGGCCGTTGTGCAGCAGGAA
GTACCAATGCTTGGCGCCCTGGGTGAACAGGTAGTCGGCCACCAGGAAGGCCGCCACCACCAGCGCCACCAG
CGCGGCCAGCAGGCCACGTCCCGGCACCATGCCGCGGTCGCGGTAGCCGCGGAACAACCCGTAGGCCAGGAT
GCCGCCAAGGAATTCCGGCAGGCGCAGCAACGGATTGCGATGCAGCAGGCCGGTCCAGGGGATCCCGTAGCT
CTCGCTGGCCACCACCAGCACCGGCGGGATCAGGTAGACCAGCCAGACCAGCGCCAGCACCTTCCACTTGTG
CCGGCTGCGCATCAGCCGCGGGGCGACGAAGGGAAACGCCAGGTAGAAGAACATCAGCGTCGACAGCGACCA
CAACGGCGCGTTGAAGGTCAGGTAATAGGGATTCCAGGCCTGCAGCAGGAGGATCTGCAGGATGCTGTTGAC
GAACAGTTCGGTGTTGCTCATCCAGTGCAGGAAGAGTTCCGGGTGGGTGCGGCCGAGCACTTCGTTGGTGTC
GTAGATGACGAAGCGCGGGGTGGCCTTGTCCAGCTCGGGACCGATTCCCAGGTGGCTGAGGGCCAGCAACAC
CAGGATCGACAGCAGCAGGGAGAACAGGTGCAGCGGATAGAGATTGGACAATCGCTTGGTCCAGAAGCTGCG
GGCGCTTTCGCGCAACCGGCCGCTGCGTGCGTAGACATGGGCCAGGAGGAAGCCGGAAAGCACGAAGAAGGT
ACTGGTGGCGAAGAACCCCAGGCTGGTCAGTTCGTCGAGACCTGGAAACTTCTGCTCTTTCGGATAGGTATG
CAGGGTGTGGTACACCACCACGTACAGGCCGAGCAGGAAGCGCAACCATTCCAGTCCGATGAAACGTTCCTT
GGAGTCGGGCGTTGCCACGCATCTCTCCTTTGTCATTGTAATGGGCGGTCCGGGGTAGACCCGCAAGCTCCC
CGGCAAGTTTCACCGGGCCGGCCAGCGGCTACGAACGGCCGCTCCCTAGCGCCGGCGGTCGAGGAAATTCAC
CACTACCCGGTCCAGCCAACCCCACAGGCGCTGGTGCAGGCGCATCCACAGGGGTCGCGCGCGCCACATCGC
CAGGGTCACCTCGCGGCTGTCGGCGAAGTCCGCCAGCAGGCTCGCCGCCGCCTCATTGGTGAAGTCCGGGTC
GAGGGCCTCGAGATTGGCGTCGAGGTTGAAGCGTAG
Translation:
MQGEQRQRGGPQARRPVADESALRVGGQRAKAHQQQLGRQQQAVVQQEVPMLGALGEQVVGHQEGRHHQRHQ
RGQQATSRHHAAVAVAAEQPVGQDAAKEFRQAQQRIAMQQAGPGDPVALAGHHQHRRDQVDQPDQRQHLPLV
PAAHQPRGDEGKRQVEEHQRRQRPQRRVEGQVIGIPGLQQEDLQDAVDEQFGVAHPVQEEFRVGAAEHFVGV
VDDEARGGLVQLGTDSQVAEGQQHQDRQQQGEQVQRIEIGQSLGPEAAGAFAQPAAACVDMGQEEAGKHEEG
TGGEEPQAGQFVETWKLLLFRIGMQGVVHHHVQAEQEAQPFQSDETFLGVGRCHASLLCHCNGRSGVDPQAP
RQVSPGRPAATNGRSLAPAVEEIHHYPVQPTPQALVQAHPQGSRAPHRQGHLAAVGEVRQQARRRLIGEVRV
EGLEIGVEVEA*
AnnotationID:6639GeneID:6638
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 17:05:47
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:13046
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:30372
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49640How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 4293868Stop: 4295199
Length: 1332
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCAGGGCGAACAGCGACAGCGAGGCGGCCCCCAGGCGCGGCGACCAGTGGCGGACGAAAGCGCTCTTCGG
GTCGGCGGGCAGCGCGCAAAGGCACACCAGCAGCAACTGGGCCGGCAGCAGCAGGCCGTTGTGCAGCAGGAA
GTACCAATGCTTGGCGCCCTGGGTGAACAGGTAGTCGGCCACCAGGAAGGCCGCCACCACCAGCGCCACCAG
CGCGGCCAGCAGGCCACGTCCCGGCACCATGCCGCGGTCGCGGTAGCCGCGGAACAACCCGTAGGCCAGGAT
GCCGCCAAGGAATTCCGGCAGGCGCAGCAACGGATTGCGATGCAGCAGGCCGGTCCAGGGGATCCCGTAGCT
CTCGCTGGCCACCACCAGCACCGGCGGGATCAGGTAGACCAGCCAGACCAGCGCCAGCACCTTCCACTTGTG
CCGGCTGCGCATCAGCCGCGGGGCGACGAAGGGAAACGCCAGGTAGAAGAACATCAGCGTCGACAGCGACCA
CAACGGCGCGTTGAAGGTCAGGTAATAGGGATTCCAGGCCTGCAGCAGGAGGATCTGCAGGATGCTGTTGAC
GAACAGTTCGGTGTTGCTCATCCAGTGCAGGAAGAGTTCCGGGTGGGTGCGGCCGAGCACTTCGTTGGTGTC
GTAGATGACGAAGCGCGGGGTGGCCTTGTCCAGCTCGGGACCGATTCCCAGGTGGCTGAGGGCCAGCAACAC
CAGGATCGACAGCAGCAGGGAGAACAGGTGCAGCGGATAGAGATTGGACAATCGCTTGGTCCAGAAGCTGCG
GGCGCTTTCGCGCAACCGGCCGCTGCGTGCGTAGACATGGGCCAGGAGGAAGCCGGAAAGCACGAAGAAGGT
ACTGGTGGCGAAGAACCCCAGGCTGGTCAGTTCGTCGAGACCTGGAAACTTCTGCTCTTTCGGATAGGTATG
CAGGGTGTGGTACACCACCACGTACAGGCCGAGCAGGAAGCGCAACCATTCCAGTCCGATGAAACGTTCCTT
GGAGTCGGGCGTTGCCACGCATCTCTCCTTTGTCATTGTAATGGGCGGTCCGGGGTAGACCCGCAAGCTCCC
CGGCAAGTTTCACCGGGCCGGCCAGCGGCTACGAACGGCCGCTCCCTAGCGCCGGCGGTCGAGGAAATTCAC
CACTACCCGGTCCAGCCAACCCCACAGGCGCTGGTGCAGGCGCATCCACAGGGGTCGCGCGCGCCACATCGC
CAGGGTCACCTCGCGGCTGTCGGCGAAGTCCGCCAGCAGGCTCGCCGCCGCCTCATTGGTGAAGTCCGGGTC
GAGGGCCTCGAGATTGGCGTCGAGGTTGAAGCGTAG