ViewGene

Locus Name:
GeneID:
Location:

GeneID:6626
TrivialName: PA14_55970
AnnotatorUID: danlee
Modification Date/Time:2006-06-02 15:03:28
LocusName:PA14_55970
PAO1 Ortholog Locus:
Sequence Length:1686
Protein Length:561
Start: 4996800
Stop: 4998485
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAA23411.1| (D86947) hydrophilic protein [Pseudomonas aeruginosa]
Identities = 326/333 (97%), Positives = 328/333 (98%)
Sequence:
ATGGCCTGGCGCTCAGCGCCGCTTCTTCCCGCCCATCAACGAGCCGAGCAGGCCACGCACCAGCTCCCGGCT
CAACTGGTTGGCCGCCTGGCGCATGGCGCTCTTCACCGTCGAATTGGACAGCAGGCTGCCGAGAATCTGCCC
GGCCATGCCGCCGACGCCGGACGCGCTTTCCTGCTGTGCAGGCGCCTGGCCCTGCACCTCGGGCTTGGCGTC
CGCCTTGCTCGCCAGCACCTCGTAGGCCGACTCGCGATCGATCGGCTGGTCGTAGCGCCCCTTCAACGGCGA
CCGCTGGACCAGTTCGGCGCGTTCGCTGTCGCTCAGCGGGCCGATCCGCGAATAGGGCGGCGCCACCGCGAC
GCGCTGGACCATGGCCGGCGTGCCCTTTTCCTCCAGGGTGCCGACCAGCGCCTCGCCGATACCCAGTTCGGT
CAGCACCCCCAGGGTGTCGAACGCCGGGTTCGGGCGGAAACCGTCGGCCACCGCGCGCAGCGATTTCTGTTC
CTTGGCGGTGAAGGCGCGCAGGCCATGCTGGATACGCAGGCCGAGCTGGGCCAGGACATCGTCCGGCAGGTC
GCCCGGCGACTGGGTGACGAAGTACACCCCGACGCCTTTCGAGCGGATCAGCCGGACCACCTGTTCCAGGCG
GTCGCGCAAGGCTTTCGGCGTGCCGTTGAACAGCAGGTGGGCCTCGTCGAAGAACAGTGCCAGCACCGGCTT
GTCGGCATCGCCGCGCTCCGGCAGTTGCTCGAACAGCTCGGCCAGCAGCCAGAGCAGGAAAGTCGCGTAGAC
CTTCGGCGCCTCGTGCACCAGGCGGCTGGCGTCGAGCAGGTGGATGCGCCCCCGCCCGTCCGGCTCGGGGCG
GAGGATGTCTTCCAGTTGCAGGGCAGGCTCGCCGAAGAAGGCCtcgGCGCCCTGCTGCTCCAGAGTGGCCAG
GCGGCGCAGCAGCGCCTGCCCGGAAGCGCCGGTGAACAGCGCCCGGTCCttgccgAGGATCTCCGGATTGTC
CTTCAGGTGGTTGAGCAGCGCCTTCAGGTCCTTCAGGtcgAGCAGCAGCAggcCTTCCCGGTCGGCCACCTG
GAAGGCGGCGAACAGCGCGGCCTGCTGGCTATCGGTCAACTCCAGGAGGTTGGCCAGCAGCAGCGGGCCCAT
CTCGCTGATGGTGGTGCGCAACGGGTGGCCGGTCTTCCCGGCGATGTCCCAGAGCGTGGTCGGGTAGGCCTT
CGGCTGGTAGTTCAGCCACGGCATGCTGGCGATGCGTTCGGCGACCTTGCCCTGCGGGTTGCCCGGCGCGGC
GATGCCGCACAGGTCGCCCTTGATGTCGGCGGCGAACACCGCGACACCGGCATCGCTGAAGGATTCGGCGAG
GTGCTGCAAGGTCACCGTCTTGCCGGTACCGGTGGCGCCGGCGATCAATCCATGACGGTTGGCCAGGCGCCA
GGCCTGCCCTACCGGCTGGCCATCGGGGCCAGCGCCGATCAACAACTCATTCGCTTGCGACATCCATTCATC
CTCGGGACTAAAGCTCCGGCACGCTGTGCCGACAGTAAGGGAAAGCCCTTGTACAACGGGGCTTCCAGCGGA
ACCCGCGTACCAATATGCGCGGGTTCCCGCGAAGGGCGTCGGGCCAGCGCATCGACCCGATCTGGCCGTCCA
GCTTCAGCGAAGACCTTCGGGCCTTGCTGA
Translation:
MAWRSAPLLPAHQRAEQATHQLPAQLVGRLAHGALHRRIGQQAAENLPGHAADAGRAFLLCRRLALHLGLGV
RLARQHLVGRLAIDRLVVAPLQRRPLDQFGAFAVAQRADPRIGRRHRDALDHGRRALFLQGADQRLADTQFG
QHPQGVERRVRAETVGHRAQRFLFLGGEGAQAMLDTQAELGQDIVRQVARRLGDEVHPDAFRADQPDHLFQA
VAQGFRRAVEQQVGLVEEQCQHRLVGIAALRQLLEQLGQQPEQESRVDLRRLVHQAAGVEQVDAPPPVRLGA
EDVFQLQGRLAEEGLGALLLQSGQAAQQRLPGSAGEQRPVLAEDLRIVLQVVEQRLQVLQVEQQQAFPVGHL
EGGEQRGLLAIGQLQEVGQQQRAHLADGGAQRVAGLPGDVPERGRVGLRLVVQPRHAGDAFGDLALRVARRG
DAAQVALDVGGEHRDTGIAEGFGEVLQGHRLAGTGGAGDQSMTVGQAPGLPYRLAIGASADQQLIRLRHPFI
LGTKAPARCADSKGKPLYNGASSGTRVPICAGSREGRRASASTRSGRPASAKTFGPC*
AnnotationID:6627GeneID:6626
AnnotatorUID: danlee
Modification Date/Time: 2006-06-02 15:03:10
Gene Name:
Confidence Code:4
GeneProduct:putative hydrophilic protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:
Homology:
>dbj|BAA23411.1| (D86947) hydrophilic protein [Pseudomonas aeruginosa]
          Length = 340

 Score =  634 bits (1636), Expect = 0.0
 Identities = 326/333 (97%), Positives = 328/333 (98%)
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:13025
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:30348
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:6626

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
200332 dbj|BAA23411.1| (D86947) hydrophilic protein [Pseudomonas aeruginosa] 561 58.11 58.64 221 1629.0
GC ORFID: 49628How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 4260476Stop: 4262161
Length: 1686
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGCCTGGCGCTCAGCGCCGCTTCTTCCCGCCCATCAACGAGCCGAGCAGGCCACGCACCAGCTCCCGGCT
CAACTGGTTGGCCGCCTGGCGCATGGCGCTCTTCACCGTCGAATTGGACAGCAGGCTGCCGAGAATCTGCCC
GGCCATGCCGCCGACGCCGGACGCGCTTTCCTGCTGTGCAGGCGCCTGGCCCTGCACCTCGGGCTTGGCGTC
CGCCTTGCTCGCCAGCACCTCGTAGGCCGACTCGCGATCGATCGGCTGGTCGTAGCGCCCCTTCAACGGCGA
CCGCTGGACCAGTTCGGCGCGTTCGCTGTCGCTCAGCGGGCCGATCCGCGAATAGGGCGGCGCCACCGCGAC
GCGCTGGACCATGGCCGGCGTGCCCTTTTCCTCCAGGGTGCCGACCAGCGCCTCGCCGATACCCAGTTCGGT
CAGCACCCCCAGGGTGTCGAACGCCGGGTTCGGGCGGAAACCGTCGGCCACCGCGCGCAGCGATTTCTGTTC
CTTGGCGGTGAAGGCGCGCAGGCCATGCTGGATACGCAGGCCGAGCTGGGCCAGGACATCGTCCGGCAGGTC
GCCCGGCGACTGGGTGACGAAGTACACCCCGACGCCTTTCGAGCGGATCAGCCGGACCACCTGTTCCAGGCG
GTCGCGCAAGGCTTTCGGCGTGCCGTTGAACAGCAGGTGGGCCTCGTCGAAGAACAGTGCCAGCACCGGCTT
GTCGGCATCGCCGCGCTCCGGCAGTTGCTCGAACAGCTCGGCCAGCAGCCAGAGCAGGAAAGTCGCGTAGAC
CTTCGGCGCCTCGTGCACCAGGCGGCTGGCGTCGAGCAGGTGGATGCGCCCCCGCCCGTCCGGCTCGGGGCG
GAGGATGTCTTCCAGTTGCAGGGCAGGCTCGCCGAAGAAGGCCtcgGCGCCCTGCTGCTCCAGAGTGGCCAG
GCGGCGCAGCAGCGCCTGCCCGGAAGCGCCGGTGAACAGCGCCCGGTCCttgccgAGGATCTCCGGATTGTC
CTTCAGGTGGTTGAGCAGCGCCTTCAGGTCCTTCAGGtcgAGCAGCAGCAggcCTTCCCGGTCGGCCACCTG
GAAGGCGGCGAACAGCGCGGCCTGCTGGCTATCGGTCAACTCCAGGAGGTTGGCCAGCAGCAGCGGGCCCAT
CTCGCTGATGGTGGTGCGCAACGGGTGGCCGGTCTTCCCGGCGATGTCCCAGAGCGTGGTCGGGTAGGCCTT
CGGCTGGTAGTTCAGCCACGGCATGCTGGCGATGCGTTCGGCGACCTTGCCCTGCGGGTTGCCCGGCGCGGC
GATGCCGCACAGGTCGCCCTTGATGTCGGCGGCGAACACCGCGACACCGGCATCGCTGAAGGATTCGGCGAG
GTGCTGCAAGGTCACCGTCTTGCCGGTACCGGTGGCGCCGGCGATCAATCCATGACGGTTGGCCAGGCGCCA
GGCCTGCCCTACCGGCTGGCCATCGGGGCCAGCGCCGATCAACAACTCATTCGCTTGCGACATCCATTCATC
CTCGGGACTAAAGCTCCGGCACGCTGTGCCGACAGTAAGGGAAAGCCCTTGTACAACGGGGCTTCCAGCGGA
ACCCGCGTACCAATATGCGCGGGTTCCCGCGAAGGGCGTCGGGCCAGCGCATCGACCCGATCTGGCCGTCCA
GCTTCAGCGAAGACCTTCGGGCCTTGCTGA