ViewGene
Locus Name:
GeneID:
Location:

GeneID:6623
TrivialName: PA14_55870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55870
PAO1 Ortholog Locus:
Sequence Length:1029
Protein Length:342
Start: 4988049
Stop: 4989077
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAM37705.1| (AE011927) hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
Identities = 56/205 (27%), Positives = 80/205 (39%), Gaps = 35/205 (17%)
Sequence:
GTGCTTGAGCACCTGCTTGGGCAGGAGGAAACCGATGCCGGCGGCGAACAGCAGCGGCACCGCGTAGGACGC
CTCGCTCTCGGCGCGCAGCAGCTTGACCAGCAAGACCAGGAGAACGAACAGCAGCGGCGTGAGGAACACCGA
GATCAGGTACAGGGTCCGGTAGCGACTCTCGTGCCAGCCGGCCTGTTGCAGCAACTGGCGGGCCTCGCTGTC
CATCAGTTGCAGGCGCCGCACCCAGAAGCTGTCGTCCATCCGCTCGGTCATGCCGGCCAGCCACCTGGTCGA
GCCGCCAGGGTTGGCCAGCGCTCCCAGGCGCCTCTCGATCAGGCGCTGCTCGCGGCTGCCGTTGCGCGCCTG
GAGCAACAGCAACAAGGCACCGCCGACCGCCATCAGGAGCGCCGCGAAAATCAGCCACTGTGCCTGCATGGC
CACCTCCTAGACGCTCTTGAGCATGCGCCACAGCGCATAGCAGCCGAGCAGTTGCAGCCCGAGCGAGGCCAG
CAGCAGGAAACGCCCGGTGCCGTCGGCCCACATGTTCAGCAGATAGCCCGGGTTGCTCGCCAGGATGTAGCC
GCCCAGGGCGCTCGGCACGCCGGCCAGGACATAGGCGCTGATCCGTGTCTCGCCGGTCATCGCGTGCAACTG
CCGGCTGAGCTTCTCGCGCTCGTGGATGAGCTTGACGATGCTGTCCAGCAGGTCGCTGGTATTGCCGCCATA
ACGGTGGTTGACCGAAACGCCCAGGGCGAGGATGCGCAGTTCCTCCACCTCGTAGAGTTCGGCGACTTCCTG
CAACGCCTCCGGCAGGTGGATGCCGAGAAGCACGTGGTTGCGTGCCAGGGTGAAGATGTCGCGCAGCGGCTC
CTCGGCGTTCTCCACCGCCTGCATCAGCGCGTCGCCCAGCGTGCGCCCGGCGTGCAGGCTGCGCACCACCTG
GTCGAGGAAGCGCGGCATCTGCCGGATCATTCGCTTCAGGCGGCGCTGGTAGAGCATGCCCAGGGCGACGCG
GCAGGACAGCGCCGCCAGTAG
Translation:
MLEHLLGQEETDAGGEQQRHRVGRLALGAQQLDQQDQENEQQRREEHRDQVQGPVATLVPAGLLQQLAGLAV
HQLQAPHPEAVVHPLGHAGQPPGRAARVGQRSQAPLDQALLAAAVARLEQQQQGTADRHQERRENQPLCLHG
HLLDALEHAPQRIAAEQLQPERGQQQETPGAVGPHVQQIARVARQDVAAQGARHAGQDIGADPCLAGHRVQL
PAELLALVDELDDAVQQVAGIAAITVVDRNAQGEDAQFLHLVEFGDFLQRLRQVDAEKHVVACQGEDVAQRL
LGVLHRLHQRVAQRAPGVQAAHHLVEEARHLPDHSLQAALVEHAQGDAAGQRRQ*
AnnotationID:6624GeneID:6623
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 08:08:33
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:16385




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30342




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49625How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 4251725Stop: 4252753

          
Length: 1029


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGCTTGAGCACCTGCTTGGGCAGGAGGAAACCGATGCCGGCGGCGAACAGCAGCGGCACCGCGTAGGACGC 
CTCGCTCTCGGCGCGCAGCAGCTTGACCAGCAAGACCAGGAGAACGAACAGCAGCGGCGTGAGGAACACCGA 
GATCAGGTACAGGGTCCGGTAGCGACTCTCGTGCCAGCCGGCCTGTTGCAGCAACTGGCGGGCCTCGCTGTC 
CATCAGTTGCAGGCGCCGCACCCAGAAGCTGTCGTCCATCCGCTCGGTCATGCCGGCCAGCCACCTGGTCGA 
GCCGCCAGGGTTGGCCAGCGCTCCCAGGCGCCTCTCGATCAGGCGCTGCTCGCGGCTGCCGTTGCGCGCCTG 
GAGCAACAGCAACAAGGCACCGCCGACCGCCATCAGGAGCGCCGCGAAAATCAGCCACTGTGCCTGCATGGC 
CACCTCCTAGACGCTCTTGAGCATGCGCCACAGCGCATAGCAGCCGAGCAGTTGCAGCCCGAGCGAGGCCAG 
CAGCAGGAAACGCCCGGTGCCGTCGGCCCACATGTTCAGCAGATAGCCCGGGTTGCTCGCCAGGATGTAGCC 
GCCCAGGGCGCTCGGCACGCCGGCCAGGACATAGGCGCTGATCCGTGTCTCGCCGGTCATCGCGTGCAACTG 
CCGGCTGAGCTTCTCGCGCTCGTGGATGAGCTTGACGATGCTGTCCAGCAGGTCGCTGGTATTGCCGCCATA 
ACGGTGGTTGACCGAAACGCCCAGGGCGAGGATGCGCAGTTCCTCCACCTCGTAGAGTTCGGCGACTTCCTG 
CAACGCCTCCGGCAGGTGGATGCCGAGAAGCACGTGGTTGCGTGCCAGGGTGAAGATGTCGCGCAGCGGCTC 
CTCGGCGTTCTCCACCGCCTGCATCAGCGCGTCGCCCAGCGTGCGCCCGGCGTGCAGGCTGCGCACCACCTG 
GTCGAGGAAGCGCGGCATCTGCCGGATCATTCGCTTCAGGCGGCGCTGGTAGAGCATGCCCAGGGCGACGCG 
GCAGGACAGCGCCGCCAGTAG