ViewGene
Locus Name:
GeneID:
Location:

GeneID:6621
TrivialName: PA14_55700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55700
PAO1 Ortholog Locus:
Sequence Length:3621
Protein Length:1206
Start: 4968707
Stop: 4972327
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAC09477.1| (AP005375) chromosome segregation SMC protein [Thermosynechococcus elongatus BP-1]
Identities = 158/664 (23%), Positives = 249/664 (37%), Gaps = 87/664 (13%)
Sequence:
GTGCGCGAACTCACCGCTGGCGAGCAGCCGGTCGAAGTCCGGATAGACCCGAGCCAGCGCCGGCGAGGCGTC
CACCTCGCCCCCCATGCCGAACCCTCCCTCGTAGCGCTTGCGCGCCTCGCGCATGGCTTTCTCGGGCTCTGC
GGCGCCACCACTGGCGAGCCAGGCGAAAGCGGTCCGGCAGGCCACCGGCAACGGCTGGCGCATGCCCTGGCG
CCAGGCGTCGATCAACTGGTCGAGGTACTCGCCGGCGCGCTCGCTCGGCAGCGGCGGAATCTCCAGGGTGCC
GGTCTGGCTCACCAGCACGCTGCTCACCGGCTGGCCGAGACGTTGCAGGGCGAGGTGCTGCAACCAGTGGCG
CACCAGGCTGTGCCACTTGAAGCCGCGCCCTTCATGGAGCTTGCCGCTGAGCAACTGCAGGCGCGCCAGGCG
CCCGGAAGCGTCGCGACGCAAGCCGCCGAGCCAGTCCTCCAGCTCCAGCCCGGACGAATGGCGATGGCGCAA
CTCCTGCTGCTGCTCGACCGCCTCCGGCCAGCGCTCGATTTCCTGGCGGTAGCGCCAGAGCAGGTCGGGCAG
CGGTTGCAGCAAATGGCGCGCGGAGAACTCGCCGAACGCCGCCAGCGGCAGGCGACCCTGTCGCCGCAGTCG
CTCGACCTGGGCCTGCAACTGCGCCGGCAGGCCCTCGGCATCCCAGTCCCGCTCGACCCAGCGCTTCATGCG
TTCGGTCAGCTCGAATTGCAGCTTCCAGTTGTCCAGCGCGTCCAGTTCGAAAGGCTCTTCGTCGTTGCCGGT
CAATTGCTCGTCGTCGAAACGCACCTTGAGCCGCTGCTGGAAGAACGCATTCACCGGGTTGGCGAGGAACTC
CGCCAGCGCTCGCAGCCCCAGCGCGCCCTCCAGTTCCAGCGGCGGCAGGGGCGCTTCGGCGTCGGGAGCGCC
GATCTCGTCCTCGCGATGGACCTCGCGCCACTCGCGGGCGTAGGTGAACAGGCCATCGACGCCCTGCTCCGG
CGCATCGTGAAAATACCGGCGGCTGAACGGCTGCAGCGGATGCTCCTGGGTCAGGGCACGCAGCAGCGCCTC
GCCGTCGCCGTCCGGATCCAGGCGCCAGCCGGCCGCCAGGTGATCGCGCAACTGGCCGATCAGCACCGAGGG
CGGCCGCTCGCCATTGTCGCGGATACTCCGCCCCACCCAGCTCACGTAGAGTTGCTCGCGCGCCGAGAGCAG
CGCCTCGAGCAGCAGGTAGCGGTCGTCCTCGCGCCGCGAGCGGTCGCCGGGGCGGTAGTCGTTGCGCATCAG
GTCGAAATCCAGCGGCGACTGCTGGCGGGGGTAGTCGCCATCGTTCATGCCAAGCAGGCAGACCAGCCGGAA
CGGGATCGCGCGCATCGGCATCAGCGTGCAGAAACTCACCGCGCCAGCCAGGAAGCGCTGGTTCAAGCCGCC
CTGGTCCAGGCCGCCGAGCCAGGCCTCGCGTATCACGCTGATCGGCAGCGGCTCGGCGAAGGCCGCACAGGC
GCAGTGTTCCTGCCAGCGTTCGAGCAATTGCAGAAGCTGGGTGAGAAGCAGTTCGTCGCGCTCGTCGTGGGC
CTCGAAGAACACCGTGAGCAGGGCCTGCAGGCGCTCGCCCCACTGCGCCGGGGTGGCCGGTTCGGCCAGCTC
GGCGTAGGCCACCTCGAGGCGCTCCAGCAGCACAGCCAGCGGGCCTGCGAGGGCGGCGTCCAGGCCACCGAC
CTCATCGTAGGGCTGGATGCCTTGCAGGGCCGCACCTTCGCCGACCGCGTAGCCGAGCAGCATGCGCCGCAG
ACCGAAGCGCCAACTGTTGCCCTCCAGCCCCGCTGGCAGGCCGAGACGCTCGCGCTGCGCGGCATCCAGCCC
CCAGCGCACGCCGGCGCCTTCGATCCAGCGGTGCAGGGTCGCCAGGTCGGCCTCGTCGACGCCGAAACGCCG
GCGCAATGCCGGGACGTCCAGCAGGTCGAGGATCTCGCTCACGGCGAAACGGCTGTCGGGCAGTTTCAGCAG
GTGCTCCAGGGCGATCAGCAGCGGCTCGCGACCGCGCTGTCCCTGGTCGGCCAGGGTATAGGGAATGAAGCG
CTGGTCGTCGCGCGGCACCTGGCCGAACACCGCCTCGATGTGCGGCGCGTAGGCGTTGATGTCGGGGACCAT
GACGATCACGTCGCGCGGCTTCAGGCTCGGATCGGCGTTGAAGCGGGCGAGCAACTGGTCGTGGAGGATCTC
CACTTCGCGCTGCGCGCTGTGGGCCACATGGAAGCGGATCGAGGCGTCGCTCCGCGGCGCCACCGGCGGCCA
GTGCTCGCGGGTTTCCGCCAACGGGCGCAGTTCGAGGATATCGTCCTGCAACTGGCCGAGCAGCCCGTGCGG
GGCCTCCTCGCTGAACAGGTCGATGCGCCCGCCGTTGACCTCGCCGAACAGGTTCCGATAGCTGTCCGGGTC
GTCGTAGCTGTCGAGCAGGTTGATGTAGTCGCGGCCCTGCTTGCCCCAGGCCGCCAGCAACGGCTGGGCATG
CTGGTGCTGGCGGTCCTCGTCGAGGTCGGCGGGGACGCCGGCGCGGCGCTGCTGGCGGCGGTACTCGTGGCG
CAACAGGTCCTTGTCGGCGACGATGTCGGCCCAGTGGTGGCGACAGGGGTTGTGCACGCAGAGCAGCACCTG
GCTGAACCTGGCCAGGGCGGCCAGCGCCTCGAGGGTCTGCGCCGGCATCGAGGAAATCCCGAACACCACTAC
TCGTCGCGGCAACGCGCGCGGCGCCGCGCTGGCGAAGCGCAGCGCCTCGATGAAGCGCCGGTGCACGCCGGA
GCGGCTGCGGGCCAGGCTATCGGCACCGACGTCGGCGAGCAGCGCGCGCCACAATTCGGCCTGCCAGCGCTC
GTCGGCACCGAGCGGGCGCGCCTGCCCGTTCGCCGTGCGCAACTGGTCGCGGCCCTGGCTCCAGTCGTCGAG
CCAGTCGCCGCGATAGACCTGGTACTGGTCGAACAGGTCGGCCAGGCGCTCGGCCAGTTGATGACGCTTGCG
CAGGTCGGCATCGTCGGCGAGGAAACGTTGCAGGGTGCGGAACTCGGGACGCTCCAGCAATCCGGGAAGCAG
ACGCATCAGGCGCCAGGTCAGCGGCGCCTTGTCCAGTTCGGAAACCTCGGGAATGCTTTCGCGGCCCAGCAC
CGCGCGATAGGCCTGCCAGAGGAACTGCGCCGGCAACTGCACCTCCAGCGCCGCGGCGATGCCGCCACCGCC
GCCACCGTCCTCGCGGGGATCTTCGGCCAATGCCAGCTTCAACCATTGGGCGATGCCGTTGCTGTGCACCAG
GACCCGCTCGCTTTCCAGCGGCGCCAGCGGATAGCGGCGCATCCAGGAAACGGCGAGGTCGCGCAGGTCGTC
CAGGCGATTGCCGTGGACGATCATGAATCCGGGCGTGAGGGCGGTGGTTCCCAAGGGTTCTGGCATCGGTAC
GGCTATTCCTGGCGCAAGGCTCTGGCGAAAGAGGTCAGGATCGGGCGGCGACGAAGCGTCGTTCCAGTTCGA
GGCTGTCGGCCATGCGGAAATCGCTCCAGCGCTCGCTCAGGCCGAGATGGCTGTCCGCCTGGCAATCCGGGG
CACTGGCGCAACGGCGGGTGA
Translation:
MRELTAGEQPVEVRIDPSQRRRGVHLAPHAEPSLVALARLAHGFLGLCGATTGEPGESGPAGHRQRLAHALA
PGVDQLVEVLAGALARQRRNLQGAGLAHQHAAHRLAETLQGEVLQPVAHQAVPLEAAPFMELAAEQLQARQA
PGSVATQAAEPVLQLQPGRMAMAQLLLLLDRLRPALDFLAVAPEQVGQRLQQMARGELAERRQRQATLSPQS
LDLGLQLRRQALGIPVPLDPALHAFGQLELQLPVVQRVQFERLFVVAGQLLVVETHLEPLLEERIHRVGEEL
RQRSQPQRALQFQRRQGRFGVGSADLVLAMDLAPLAGVGEQAIDALLRRIVKIPAAERLQRMLLGQGTQQRL
AVAVRIQAPAGRQVIAQLADQHRGRPLAIVADTPPHPAHVELLARREQRLEQQVAVVLAPRAVAGAVVVAHQ
VEIQRRLLAGVVAIVHAKQADQPERDRAHRHQRAETHRASQEALVQAALVQAAEPGLAYHADRQRLGEGRTG
AVFLPAFEQLQKLGEKQFVALVVGLEEHREQGLQALAPLRRGGRFGQLGVGHLEALQQHSQRACEGGVQATD
LIVGLDALQGRTFADRVAEQHAPQTEAPTVALQPRWQAETLALRGIQPPAHAGAFDPAVQGRQVGLVDAETP
AQCRDVQQVEDLAHGETAVGQFQQVLQGDQQRLATALSLVGQGIGNEALVVARHLAEHRLDVRRVGVDVGDH
DDHVARLQARIGVEAGEQLVVEDLHFALRAVGHMEADRGVAPRRHRRPVLAGFRQRAQFEDIVLQLAEQPVR
GLLAEQVDAPAVDLAEQVPIAVRVVVAVEQVDVVAALLAPGRQQRLGMLVLAVLVEVGGDAGAALLAAVLVA
QQVLVGDDVGPVVATGVVHAEQHLAEPGQGGQRLEGLRRHRGNPEHHYSSRQRARRRAGEAQRLDEAPVHAG
AAAGQAIGTDVGEQRAPQFGLPALVGTERARLPVRRAQLVAALAPVVEPVAAIDLVLVEQVGQALGQLMTLA
QVGIVGEETLQGAELGTLQQSGKQTHQAPGQRRLVQFGNLGNAFAAQHRAIGLPEELRRQLHLQRRGDAATA
ATVLAGIFGQCQLQPLGDAVAVHQDPLAFQRRQRIAAHPGNGEVAQVVQAIAVDDHESGREGGGSQGFWHRY
GYSWRKALAKEVRIGRRRSVVPVRGCRPCGNRSSARSGRDGCPPGNPGHWRNGG*
AnnotationID:6622GeneID:6621
AnnotatorUID: diggins
Modification Date/Time: 2005-04-03 19:07:27
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:16381




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30338




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49623How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 4232383Stop: 4236003

          
Length: 3621


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold2_revised_gene3581Homolog Bit Score 190.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3581 (BLASTP 190)

          
GC ORF Sequence

           
GTGCGCGAACTCACCGCTGGCGAGCAGCCGGTCGAAGTCCGGATAGACCCGAGCCAGCGCCGGCGAGGCGTC 
CACCTCGCCCCCCATGCCGAACCCTCCCTCGTAGCGCTTGCGCGCCTCGCGCATGGCTTTCTCGGGCTCTGC 
GGCGCCACCACTGGCGAGCCAGGCGAAAGCGGTCCGGCAGGCCACCGGCAACGGCTGGCGCATGCCCTGGCG 
CCAGGCGTCGATCAACTGGTCGAGGTACTCGCCGGCGCGCTCGCTCGGCAGCGGCGGAATCTCCAGGGTGCC 
GGTCTGGCTCACCAGCACGCTGCTCACCGGCTGGCCGAGACGTTGCAGGGCGAGGTGCTGCAACCAGTGGCG 
CACCAGGCTGTGCCACTTGAAGCCGCGCCCTTCATGGAGCTTGCCGCTGAGCAACTGCAGGCGCGCCAGGCG 
CCCGGAAGCGTCGCGACGCAAGCCGCCGAGCCAGTCCTCCAGCTCCAGCCCGGACGAATGGCGATGGCGCAA 
CTCCTGCTGCTGCTCGACCGCCTCCGGCCAGCGCTCGATTTCCTGGCGGTAGCGCCAGAGCAGGTCGGGCAG 
CGGTTGCAGCAAATGGCGCGCGGAGAACTCGCCGAACGCCGCCAGCGGCAGGCGACCCTGTCGCCGCAGTCG 
CTCGACCTGGGCCTGCAACTGCGCCGGCAGGCCCTCGGCATCCCAGTCCCGCTCGACCCAGCGCTTCATGCG 
TTCGGTCAGCTCGAATTGCAGCTTCCAGTTGTCCAGCGCGTCCAGTTCGAAAGGCTCTTCGTCGTTGCCGGT 
CAATTGCTCGTCGTCGAAACGCACCTTGAGCCGCTGCTGGAAGAACGCATTCACCGGGTTGGCGAGGAACTC 
CGCCAGCGCTCGCAGCCCCAGCGCGCCCTCCAGTTCCAGCGGCGGCAGGGGCGCTTCGGCGTCGGGAGCGCC 
GATCTCGTCCTCGCGATGGACCTCGCGCCACTCGCGGGCGTAGGTGAACAGGCCATCGACGCCCTGCTCCGG 
CGCATCGTGAAAATACCGGCGGCTGAACGGCTGCAGCGGATGCTCCTGGGTCAGGGCACGCAGCAGCGCCTC 
GCCGTCGCCGTCCGGATCCAGGCGCCAGCCGGCCGCCAGGTGATCGCGCAACTGGCCGATCAGCACCGAGGG 
CGGCCGCTCGCCATTGTCGCGGATACTCCGCCCCACCCAGCTCACGTAGAGTTGCTCGCGCGCCGAGAGCAG 
CGCCTCGAGCAGCAGGTAGCGGTCGTCCTCGCGCCGCGAGCGGTCGCCGGGGCGGTAGTCGTTGCGCATCAG 
GTCGAAATCCAGCGGCGACTGCTGGCGGGGGTAGTCGCCATCGTTCATGCCAAGCAGGCAGACCAGCCGGAA 
CGGGATCGCGCGCATCGGCATCAGCGTGCAGAAACTCACCGCGCCAGCCAGGAAGCGCTGGTTCAAGCCGCC 
CTGGTCCAGGCCGCCGAGCCAGGCCTCGCGTATCACGCTGATCGGCAGCGGCTCGGCGAAGGCCGCACAGGC 
GCAGTGTTCCTGCCAGCGTTCGAGCAATTGCAGAAGCTGGGTGAGAAGCAGTTCGTCGCGCTCGTCGTGGGC 
CTCGAAGAACACCGTGAGCAGGGCCTGCAGGCGCTCGCCCCACTGCGCCGGGGTGGCCGGTTCGGCCAGCTC 
GGCGTAGGCCACCTCGAGGCGCTCCAGCAGCACAGCCAGCGGGCCTGCGAGGGCGGCGTCCAGGCCACCGAC 
CTCATCGTAGGGCTGGATGCCTTGCAGGGCCGCACCTTCGCCGACCGCGTAGCCGAGCAGCATGCGCCGCAG 
ACCGAAGCGCCAACTGTTGCCCTCCAGCCCCGCTGGCAGGCCGAGACGCTCGCGCTGCGCGGCATCCAGCCC 
CCAGCGCACGCCGGCGCCTTCGATCCAGCGGTGCAGGGTCGCCAGGTCGGCCTCGTCGACGCCGAAACGCCG 
GCGCAATGCCGGGACGTCCAGCAGGTCGAGGATCTCGCTCACGGCGAAACGGCTGTCGGGCAGTTTCAGCAG 
GTGCTCCAGGGCGATCAGCAGCGGCTCGCGACCGCGCTGTCCCTGGTCGGCCAGGGTATAGGGAATGAAGCG 
CTGGTCGTCGCGCGGCACCTGGCCGAACACCGCCTCGATGTGCGGCGCGTAGGCGTTGATGTCGGGGACCAT 
GACGATCACGTCGCGCGGCTTCAGGCTCGGATCGGCGTTGAAGCGGGCGAGCAACTGGTCGTGGAGGATCTC 
CACTTCGCGCTGCGCGCTGTGGGCCACATGGAAGCGGATCGAGGCGTCGCTCCGCGGCGCCACCGGCGGCCA 
GTGCTCGCGGGTTTCCGCCAACGGGCGCAGTTCGAGGATATCGTCCTGCAACTGGCCGAGCAGCCCGTGCGG 
GGCCTCCTCGCTGAACAGGTCGATGCGCCCGCCGTTGACCTCGCCGAACAGGTTCCGATAGCTGTCCGGGTC 
GTCGTAGCTGTCGAGCAGGTTGATGTAGTCGCGGCCCTGCTTGCCCCAGGCCGCCAGCAACGGCTGGGCATG 
CTGGTGCTGGCGGTCCTCGTCGAGGTCGGCGGGGACGCCGGCGCGGCGCTGCTGGCGGCGGTACTCGTGGCG 
CAACAGGTCCTTGTCGGCGACGATGTCGGCCCAGTGGTGGCGACAGGGGTTGTGCACGCAGAGCAGCACCTG 
GCTGAACCTGGCCAGGGCGGCCAGCGCCTCGAGGGTCTGCGCCGGCATCGAGGAAATCCCGAACACCACTAC 
TCGTCGCGGCAACGCGCGCGGCGCCGCGCTGGCGAAGCGCAGCGCCTCGATGAAGCGCCGGTGCACGCCGGA 
GCGGCTGCGGGCCAGGCTATCGGCACCGACGTCGGCGAGCAGCGCGCGCCACAATTCGGCCTGCCAGCGCTC 
GTCGGCACCGAGCGGGCGCGCCTGCCCGTTCGCCGTGCGCAACTGGTCGCGGCCCTGGCTCCAGTCGTCGAG 
CCAGTCGCCGCGATAGACCTGGTACTGGTCGAACAGGTCGGCCAGGCGCTCGGCCAGTTGATGACGCTTGCG 
CAGGTCGGCATCGTCGGCGAGGAAACGTTGCAGGGTGCGGAACTCGGGACGCTCCAGCAATCCGGGAAGCAG 
ACGCATCAGGCGCCAGGTCAGCGGCGCCTTGTCCAGTTCGGAAACCTCGGGAATGCTTTCGCGGCCCAGCAC 
CGCGCGATAGGCCTGCCAGAGGAACTGCGCCGGCAACTGCACCTCCAGCGCCGCGGCGATGCCGCCACCGCC 
GCCACCGTCCTCGCGGGGATCTTCGGCCAATGCCAGCTTCAACCATTGGGCGATGCCGTTGCTGTGCACCAG 
GACCCGCTCGCTTTCCAGCGGCGCCAGCGGATAGCGGCGCATCCAGGAAACGGCGAGGTCGCGCAGGTCGTC 
CAGGCGATTGCCGTGGACGATCATGAATCCGGGCGTGAGGGCGGTGGTTCCCAAGGGTTCTGGCATCGGTAC 
GGCTATTCCTGGCGCAAGGCTCTGGCGAAAGAGGTCAGGATCGGGCGGCGACGAAGCGTCGTTCCAGTTCGA 
GGCTGTCGGCCATGCGGAAATCGCTCCAGCGCTCGCTCAGGCCGAGATGGCTGTCCGCCTGGCAATCCGGGG 
CACTGGCGCAACGGCGGGTGA