ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6613

TrivialName: PA14_09170

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_09170

PAO1 Ortholog Locus:

Sequence Length: 2904

Protein Length: 967

Start: 775210

Stop: 778113

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: dbj|BAC18316.1| (AP005219) conserved hypothetical protein [Corynebacterium efficiens YS-314] Identities = 241/605 (39%), Positives = 309/605 (51%), Gaps = 17/605 (2%)

Sequence:

ATGAGCGCCCGGCAATCAGGCGCGATCGCGTTCCAGCAGCGGCTTGAGGAAGTGGCCGGTGTGCGACTGGGG
CATCTCGGCCACCTGCTCTGGCGTGCCGTTGGCGATGATCTGGCCACCCTTGGAGCCGCCCTCGGGGCCGAG
GTCGACCAGCCAGTCGGCGGTCTTGATCACGTCCAGGTTGTGCTCGATCACCACCACGGTGTTGCCGTGGTC
GCGCAGGCGGTGGAGCACGTCGAGCAGTTGCTGGATGTCGGCGAAGTGCAGGCCGGTGGTCGGTTCGTCGAG
GATGTACAGGGTCTTGCCGGTGTCGCGCTTGGACAGCTCGCGGGACAGCTTGACCCGCTGTGCCTCGCCGCC
CGAGAGGGTGGTCGCGCTCTGGCCCAGCTTGATGTAGGACAGGCCGACGTCCATCAGTGTCTGCAGCTTGCG
CGCCAGGGCGGGGACGGCGTCGAAGAACTCGCGGGCTTCCTCGATGGTCATCTCCAGCACTTCGTGGATGCT
CTTGCCCTTGTAGCGGATCTCCAGGGTCTCGCGGTTGTAGCGCTTGCCCTTGCAGACATCGCAGGGAACGTA
GATGTCCGGCAGGAAGTGCATCTCCACCTTGATCACGCCGTCGCCCTGGCAGGCCTCGCAACGGCCGCCCTT
GACGTTGAACGAGAAGCGGCCGGGACCGTAGCCGCGCGAGCGGGCCTCCGGCACGCCGGAGAACAGTTCGCG
GATCGGCGTGAACAGGCCGGTATAGGTCGCCGGGTTGGAGCGCGGGGTACGACCGATCGGGCTCTGGTCGAT
GTCGACCACCTTGTCCAGGTGCTGCAGGCCGTCGAACGAGTCGTACGGCGCCACTTCCAGGGTAGTCGCGCC
GTTCAGCGCGGTGGCGGTGATCGGGAACAGGGTGTTGTTGATCAGCGTCGACTTGCCGGAGCCCGAGACCCC
GGTGATGCAGGTGAACAGGCCGACCGGGATTTCCAGGTTGACGTTCTGCAGGTTGTTGCCGCGGGCGCCTTT
CAGCTTCAGCAGCTTCTTCTTGTCGCGCGGGGTGCGCTTGGCCGGAACCGCGATTTTCTTGCGCCCGGAAAG
GTACTTGCCGGTCAGCGAGTCGGGGTGGTTCATCACCTGGTCGGGCGTACCTTCCGCCACTACCTGGCCGCC
GTGCACACCGGCGCCCGGACCGATGTCGACGACGTAGTCGGCGAGTCGGATCGCGTCCTCGTCGTGCTCGAC
CACGATCACCGTGTTGCCGAGGTTGCGCAGGTGGGTGAGGGTGCCGAGCAGGCGTTCGTTGTCGCGTTGGTG
CAGGCCGATCGAGGGTTCGTCGAGGATGTACATCACTCCCACCAGGCCGGCGCCGATCTGGCTGGCCAGGCG
GATGCGCTGGGCTTCGCCGCCGGACAGGGTGTCGGCGCTGCGGTCGAGGGTCAGGTAGTCGAGGCCGACGTT
GACCAGGAATTGCAGGCGGTCGCGGATTTCCTTGAGGATTTTCGCCGCGATCTCGCCACGGCGGCCGGTCAG
GCTGAGTCCGGCGGCATACTCGCAGGCCTCGCCGACCGGCATCGCGGTGATCGCCGGCAGCGTCCGGTCGCC
GACCCACACATGCCGCGCCTCGCGGCGCAGGCGGGTACCGTGGCAATCCGGGCAGGGCTGGGTGCTGAGGAA
CTTGGCCAGCTCCTCGCGGACCGTGGCCGACTCGGTCTCGCGGTAGCGCCGCTCAAGGTTCGGCAGGATGCC
TTCGAAGGGGTGCGAACGCTTGACGATGTCGCCGCGGTCGTTGAGATAGCGGAAGTCGACGTTTTCCCGGCC
GGAGCCGTAGAGCACCACCTTCTGGTGCTCGGCGCCGAGTTCGTCGAAGGGTTCTTCCAGGCTGAAGCCGTA
ATGCTGGGCCAGCGAGCCGAGCATCTGGAAGTAATAGACGTTGCGCCGGTCCCAGCCGCGGATCGCGCCCTC
GGCCAGGGTCAACTCGCCATTGACCACCCGGCGCGCGTCGAAGAATTGCTTCACGCCGAGGCCGTCGCAGGT
CGGACAGGCGCCGGCCGGGTTGTTGAAGGAGAACAGCTTGGGTTCCAGCTCGCTGATCGAGTGGCCGCAGAC
CGGGCAGGCGAAGCGCGCCGAGAAGATGATCTCCTCGACATCCTCGTCCTCGTCCATCGGTGCTACCAGGGC
GATACCGTCGGCCAGGGACAGGGCGGTCTCGAACGACTCGGCCAGGCGTTGCTGGAGGTCCGCGCGAACCTT
GAAGCGGTCCACCACCACATCGATGCTGTGCTTCTTCTGCTTATCCAGCTTCGGCACTTCGTCGAGTTCGTA
GAGCTTGCCGTCGACCCGGGCGCGGACGAAACCCTGCGCGCGCATCTCGTCGAACACCGCCAGGTGCTCGCC
CTTGCGCTCGCGGATCACCGGCGCCAGCAGCATCAGCTTGCTGCCTTCCGGCAGGGCCAGGACCTGGTCGAC
CATCTGGCTGACGGTCTGCGCCTCCAGCGGGATGTCGTGGTCCGGGCAGCGCGGGGTACCGACGCGGGCATA
AAGCAGGCGCAGGTAGTCGTAGATCTCGGTGATCGTACCCACGGTGGAGCGTGGGTTGTGGGAAGTGGACTT
CTGTTCGATGGAAATCGCCGGCGACAGCCCTTCGATGGTGTCCACGTCCGGCTTCTCCATCATCGACAGGAA
CTGCCGGGCGTAGGCCGAGAGGGATTCCACGTAGCGCCGCTGGCCTTCCGCATAGAGCGTGTCGAAAGCCAG
GGAAGACTTGCCGGAACCGGAAAGACCGGTGATCACGATCAGTTTGTCGCGTGGCAGTGTGAGGTCGACGTT
CTTCAGGTTGTGGGTACGCGCCCCACGAATCAGGATCTTATCCACAGCGGCCTCGCATGGCGGGCGAAAACC
GCTGATTATACGGCTGGCCGCTAG

Translation:

MSARQSGAIAFQQRLEEVAGVRLGHLGHLLWRAVGDDLATLGAALGAEVDQPVGGLDHVQVVLDHHHGVAVV
AQAVEHVEQLLDVGEVQAGGRFVEDVQGLAGVALGQLAGQLDPLCLAAREGGRALAQLDVGQADVHQCLQLA
RQGGDGVEELAGFLDGHLQHFVDALALVADLQGLAVVALALADIAGNVDVRQEVHLHLDHAVALAGLATAAL
DVEREAAGTVAARAGLRHAGEQFADRREQAGIGRRVGARGTTDRALVDVDHLVQVLQAVERVVRRHFQGSRA
VQRGGGDREQGVVDQRRLAGARDPGDAGEQADRDFQVDVLQVVAAGAFQLQQLLLVARGALGRNRDFLAPGK
VLAGQRVGVVHHLVGRTFRHYLAAVHTGARTDVDDVVGESDRVLVVLDHDHRVAEVAQVGEGAEQAFVVALV
QADRGFVEDVHHSHQAGADLAGQADALGFAAGQGVGAAVEGQVVEADVDQELQAVADFLEDFRRDLATAAGQ
AESGGILAGLADRHRGDRRQRPVADPHMPRLAAQAGTVAIRAGLGAEELGQLLADRGRLGLAVAPLKVRQDA
FEGVRTLDDVAAVVEIAEVDVFPAGAVEHHLLVLGAEFVEGFFQAEAVMLGQRAEHLEVIDVAPVPAADRAL
GQGQLAIDHPARVEELLHAEAVAGRTGAGRVVEGEQLGFQLADRVAADRAGEARREDDLLDILVLVHRCYQG
DTVGQGQGGLERLGQALLEVRANLEAVHHHIDAVLLLLIQLRHFVEFVELAVDPGADETLRAHLVEHRQVLA
LALADHRRQQHQLAAFRQGQDLVDHLADGLRLQRDVVVRAARGTDAGIKQAQVVVDLGDRTHGGAWVVGSGL
LFDGNRRRQPFDGVHVRLLHHRQELPGVGREGFHVAPLAFRIERVESQGRLAGTGKTGDHDQFVAWQCEVDV
LQVVGTRPTNQDLIHSGLAWRAKTADYTAGR*

AnnotationID:6614 GeneID:6613

AnnotatorUID: diggins

Modification Date/Time: 2005-04-01 08:08:37

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:13002

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30323

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:6613

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

200169 dbj|BAC18317.1| (AP005219) conserved hypothetical protein [Corynebacterium efficiens YS-314] 967 10.03 12.51 768 428.0

GC ORFID: `49615`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `4178728`	Stop: `4175825`
Length: `2904`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGAGCGCCCGGCAATCAGGCGCGATCGCGTTCCAGCAGCGGCTTGAGGAAGTGGCCGGTGTGCGACTGGGG CATCTCGGCCACCTGCTCTGGCGTGCCGTTGGCGATGATCTGGCCACCCTTGGAGCCGCCCTCGGGGCCGAG GTCGACCAGCCAGTCGGCGGTCTTGATCACGTCCAGGTTGTGCTCGATCACCACCACGGTGTTGCCGTGGTC GCGCAGGCGGTGGAGCACGTCGAGCAGTTGCTGGATGTCGGCGAAGTGCAGGCCGGTGGTCGGTTCGTCGAG GATGTACAGGGTCTTGCCGGTGTCGCGCTTGGACAGCTCGCGGGACAGCTTGACCCGCTGTGCCTCGCCGCC CGAGAGGGTGGTCGCGCTCTGGCCCAGCTTGATGTAGGACAGGCCGACGTCCATCAGTGTCTGCAGCTTGCG CGCCAGGGCGGGGACGGCGTCGAAGAACTCGCGGGCTTCCTCGATGGTCATCTCCAGCACTTCGTGGATGCT CTTGCCCTTGTAGCGGATCTCCAGGGTCTCGCGGTTGTAGCGCTTGCCCTTGCAGACATCGCAGGGAACGTA GATGTCCGGCAGGAAGTGCATCTCCACCTTGATCACGCCGTCGCCCTGGCAGGCCTCGCAACGGCCGCCCTT GACGTTGAACGAGAAGCGGCCGGGACCGTAGCCGCGCGAGCGGGCCTCCGGCACGCCGGAGAACAGTTCGCG GATCGGCGTGAACAGGCCGGTATAGGTCGCCGGGTTGGAGCGCGGGGTACGACCGATCGGGCTCTGGTCGAT GTCGACCACCTTGTCCAGGTGCTGCAGGCCGTCGAACGAGTCGTACGGCGCCACTTCCAGGGTAGTCGCGCC GTTCAGCGCGGTGGCGGTGATCGGGAACAGGGTGTTGTTGATCAGCGTCGACTTGCCGGAGCCCGAGACCCC GGTGATGCAGGTGAACAGGCCGACCGGGATTTCCAGGTTGACGTTCTGCAGGTTGTTGCCGCGGGCGCCTTT CAGCTTCAGCAGCTTCTTCTTGTCGCGCGGGGTGCGCTTGGCCGGAACCGCGATTTTCTTGCGCCCGGAAAG GTACTTGCCGGTCAGCGAGTCGGGGTGGTTCATCACCTGGTCGGGCGTACCTTCCGCCACTACCTGGCCGCC GTGCACACCGGCGCCCGGACCGATGTCGACGACGTAGTCGGCGAGTCGGATCGCGTCCTCGTCGTGCTCGAC CACGATCACCGTGTTGCCGAGGTTGCGCAGGTGGGTGAGGGTGCCGAGCAGGCGTTCGTTGTCGCGTTGGTG CAGGCCGATCGAGGGTTCGTCGAGGATGTACATCACTCCCACCAGGCCGGCGCCGATCTGGCTGGCCAGGCG GATGCGCTGGGCTTCGCCGCCGGACAGGGTGTCGGCGCTGCGGTCGAGGGTCAGGTAGTCGAGGCCGACGTT GACCAGGAATTGCAGGCGGTCGCGGATTTCCTTGAGGATTTTCGCCGCGATCTCGCCACGGCGGCCGGTCAG GCTGAGTCCGGCGGCATACTCGCAGGCCTCGCCGACCGGCATCGCGGTGATCGCCGGCAGCGTCCGGTCGCC GACCCACACATGCCGCGCCTCGCGGCGCAGGCGGGTACCGTGGCAATCCGGGCAGGGCTGGGTGCTGAGGAA CTTGGCCAGCTCCTCGCGGACCGTGGCCGACTCGGTCTCGCGGTAGCGCCGCTCAAGGTTCGGCAGGATGCC TTCGAAGGGGTGCGAACGCTTGACGATGTCGCCGCGGTCGTTGAGATAGCGGAAGTCGACGTTTTCCCGGCC GGAGCCGTAGAGCACCACCTTCTGGTGCTCGGCGCCGAGTTCGTCGAAGGGTTCTTCCAGGCTGAAGCCGTA ATGCTGGGCCAGCGAGCCGAGCATCTGGAAGTAATAGACGTTGCGCCGGTCCCAGCCGCGGATCGCGCCCTC GGCCAGGGTCAACTCGCCATTGACCACCCGGCGCGCGTCGAAGAATTGCTTCACGCCGAGGCCGTCGCAGGT CGGACAGGCGCCGGCCGGGTTGTTGAAGGAGAACAGCTTGGGTTCCAGCTCGCTGATCGAGTGGCCGCAGAC CGGGCAGGCGAAGCGCGCCGAGAAGATGATCTCCTCGACATCCTCGTCCTCGTCCATCGGTGCTACCAGGGC GATACCGTCGGCCAGGGACAGGGCGGTCTCGAACGACTCGGCCAGGCGTTGCTGGAGGTCCGCGCGAACCTT GAAGCGGTCCACCACCACATCGATGCTGTGCTTCTTCTGCTTATCCAGCTTCGGCACTTCGTCGAGTTCGTA GAGCTTGCCGTCGACCCGGGCGCGGACGAAACCCTGCGCGCGCATCTCGTCGAACACCGCCAGGTGCTCGCC CTTGCGCTCGCGGATCACCGGCGCCAGCAGCATCAGCTTGCTGCCTTCCGGCAGGGCCAGGACCTGGTCGAC CATCTGGCTGACGGTCTGCGCCTCCAGCGGGATGTCGTGGTCCGGGCAGCGCGGGGTACCGACGCGGGCATA AAGCAGGCGCAGGTAGTCGTAGATCTCGGTGATCGTACCCACGGTGGAGCGTGGGTTGTGGGAAGTGGACTT CTGTTCGATGGAAATCGCCGGCGACAGCCCTTCGATGGTGTCCACGTCCGGCTTCTCCATCATCGACAGGAA CTGCCGGGCGTAGGCCGAGAGGGATTCCACGTAGCGCCGCTGGCCTTCCGCATAGAGCGTGTCGAAAGCCAG GGAAGACTTGCCGGAACCGGAAAGACCGGTGATCACGATCAGTTTGTCGCGTGGCAGTGTGAGGTCGACGTT CTTCAGGTTGTGGGTACGCGCCCCACGAATCAGGATCTTATCCACAGCGGCCTCGCATGGCGGGCGAAAACC GCTGATTATACGGCTGGCCGCTAG