ViewGene
Locus Name:
GeneID:
Location:

GeneID:6612
TrivialName: PA14_09190
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09190
PAO1 Ortholog Locus:
Sequence Length:1494
Protein Length:497
Start: 778276
Stop: 779768
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
GeneID6612 (PA14_09190) replaced by GeneID7420 (PA14_09195). Homology: gb|AAG07621.1|AE004840_7 (AE004840) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 169/169 (100%), Positives = 169/169 (100%)
Sequence:
ATGCACGACTCACATACTGAGCGGATGAGCGGTACCGAAACGCGAGCGGCCGTCGGGCTGTCACTGGTATTC
GCCTTCCGCATGCTCGGCATGTTCATGGTCCTGCCGGTGCTGGCCACCTACGGCCAGGACCTGGCCGGCGCG
ACCCCGGCGCTGATCGGCCTGGCCATCGGCGCCTATGGCCTGACCCAGGCGATCCTGCAGATTCCCTTCGGG
ACCATTTCCGACCGCATCGGCCGGCGCCCGGTGATCGTCGTCGGGCTGCTGATCTTTGCCGCCGGCGCGGCC
CTCGCGGCCAATGCCGACTCCATCTGGGGGGTGATCGCCGGCCGCGTCCTGCAGGGCGCCGGGGCGATCTCG
GCGGCGGTGATGGCACTGCTCTCCGACCTCACCcGCGAGCAACACCGGACCAAGGCGATGGCGATGATCGGC
ATGAGCATCGGCGTCTCCTTCGCCGTGGCCATGGTGCTCGGCCCGGTGCTGACCCATCTGTTCGGCCTGCAT
GGGGCTGTTCTGGTTCACCGCCGGGATGGCGCTGGTcGGCCTGCTGCTGATCCTGTTCTTCGTCCCACAGCC
GGACCACATGACCCAGCACCGCGAATCCAGCGTGGCGCGCCAGGCCCTGCTGCCGACCCTGAAGCACGGCGA
CCTGCTGCGCCTGGACGCCGGCATCCTGATCCTCCACGCCATCCTCATGGCCAGCTTCGTCGCCTTGCCGCT
GGCGCTGGTGCACGAGGGTGGCCTGCCCAAGGAGCAGCACTGGTGGGTCTACCTGACCGCGCTGTTGGTCGG
TTTCTTCGGCATGGTGCCGTTCATCATCTACGCCGAGAAGAAGCGTCGCATGAAGCGCGTGCTGACCGGCGC
GGTGGCGACCCTGCTGGCCTGCGAACTGTTCTTCCTGGTCTTCGGTCACAGCCTGGCCATGCTGGTGGTCGG
CACGGTGGTGTTCTTCACTGCCTTCAACCTGCTCGAAGCCTCGCTGCCGTCGCTGGTCAGCAAGGTCTCGCC
GGCCGGCGGCAAGGGCACGGCGATGGGGGTGTATTCCACCAGCCAGTTCCTCGGTGCGGCGCTGGGCGGCAT
CCTCGGCGGCTGGATGTTCCAGCACGGCGGGCTGAGCATGGTGTTCATCGGATGCGCGGTGCTCGCTGCCCT
CTGGCTGGCGATTGCTGTTACCATGCGCGAACCGCCTTATGTGACCAGCATTCGCCTGCCGCTCGCGCCCGC
CGCGCTGCAGGACGCGGTGCTGGTCCAGCGATTCAGGGCGTTGCCCGGTGTGGCAGACGCCGTGGTGGTGGC
CGAGGAGGCCGCCGCCTATGTCAAAGTGGATACCCAACAAGTGGATCGCACCGCCCTCGAGCGCCTGGCCCA
GGCCGCGCCGGGCGGATGCTGAACCTTAGGAGAACGTCATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTG
GTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAATGCGGTGA
Translation:
MHDSHTERMSGTETRAAVGLSLVFAFRMLGMFMVLPVLATYGQDLAGATPALIGLAIGAYGLTQAILQIPFG
TISDRIGRRPVIVVGLLIFAAGAALAANADSIWGVIAGRVLQGAGAISAAVMALLSDLTREQHRTKAMAMIG
MSIGVSFAVAMVLGPVLTHLFGLHGAVLVHRRDGAGRPAADPVLRPTAGPHDPAPRIQRGAPGPAADPEARR
PAAPGRRHPDPPRHPHGQLRRLAAGAGARGWPAQGAALVGLPDRAVGRFLRHGAVHHLRREEASHEARADRR
GGDPAGLRTVLPGLRSQPGHAGGRHGGVLHCLQPARSLAAVAGQQGLAGRRQGHGDGGVFHQPVPRCGAGRH
PRRLDVPARRAEHGVHRMRGARCPLAGDCCYHARTALCDQHSPAARARRAAGRGAGPAIQGVARCGRRRGGG
RGGRRLCQSGYPTSGSHRPRAPGPGRAGRMLNLRRTSWPVGLTKSFWLVTSVVTRKPATCPTAMR*
AnnotationID:6613GeneID:6612
AnnotatorUID: danlee
Modification Date/Time: 2006-03-11 17:05:35
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
>gb|AAN66114.1|AE016239_9 (AE016775) major facilitator family transporter [Pseudomonas putida
           KT2440]
          Length = 464

 Score =  290 bits (743), Expect = 1e-77
 Identities = 156/213 (73%), Positives = 168/213 (78%), Gaps = 24/213 (11%)

>gb|AAO54197.1| (AE016858) major facilitator family transporter [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 464

 Score =  282 bits (722), Expect = 3e-75
 Identities = 143/172 (83%), Positives = 158/172 (91%)

>gb|AAN79016.1|AE016756_199 (AE016756) Hypothetical transport protein yajR [Escherichia coli
           CFT073]
          Length = 520

 Score =  227 bits (579), Expect = 1e-58
 Identities = 112/161 (69%), Positives = 135/161 (83%)






 
Structural Features:






   
Genomic Context:






   
Comment:
GeneID6612 (PA14_09190) replaced by GeneID7420 (PA14_09195).


















    ReferenceID:13000




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30321




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36930




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6612_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6612
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
8005
                           PA4233_tr
                           translation of PA4233
                           608
                           37.17
                           42.10
                           257
                           821.0
     

     
     
200132
                           gb|AAG07621.1|AE004840_7
                           (AE004840) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           608
                           37.17
                           42.10
                           257
                           821.0
     

     
     
200133
                           gb|AAN66114.1|AE016239_9
                           (AE016775) major facilitator family transporter [Pseudomonas putida KT2440]
                           592
                           35.81
                           40.20
                           223
                           734.0
     

     
     
200134
                           gb|AAO54197.1|
                           (AE016858) major facilitator family transporter [Pseudomonas syringae pv. tomato str. DC3000]
                           595
                           35.46
                           41.17
                           229
                           728.0
     

     
     
200139
                           gb|AAB40183.1|
                           (U82664) hypothetical protein [Escherichia coli]
                           603
                           29.02
                           37.97
                           253
                           552.0
     

     






      

          
GC ORFID: 49614How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 4175662Stop: 4174169

          
Length: 1494


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4233 translation of PA4233Homolog Bit Score 324.0

          
Other Homologs:  t_PA4233 translation of PA4233 (BLASTP 324), psyr_15may02_Scaffold4_revised_gene5218 related to: gi|15599429|ref|NP_252923.1| (NC_002516) probable MFS transporter [Pseudomonas aeruginosa] pir||D83117 probable MFS transporter PA4233 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG07621.1|AE004840_7 (AE004840) probable MFS transporter -TRUNCATED- (BLASTP 283)

          
GC ORF Sequence

           
ATGCACGACTCACATACTGAGCGGATGAGCGGTACCGAAACGCGAGCGGCCGTCGGGCTGTCACTGGTATTC 
GCCTTCCGCATGCTCGGCATGTTCATGGTCCTGCCGGTGCTGGCCACCTACGGCCAGGACCTGGCCGGCGCG 
ACCCCGGCGCTGATCGGCCTGGCCATCGGCGCCTATGGCCTGACCCAGGCGATCCTGCAGATTCCCTTCGGG 
ACCATTTCCGACCGCATCGGCCGGCGCCCGGTGATCGTCGTCGGGCTGCTGATCTTTGCCGCCGGCGCGGCC 
CTCGCGGCCAATGCCGACTCCATCTGGGGGGTGATCGCCGGCCGCGTCCTGCAGGGCGCCGGGGCGATCTCG 
GCGGCGGTGATGGCACTGCTCTCCGACCTCACCcGCGAGCAACACCGGACCAAGGCGATGGCGATGATCGGC 
ATGAGCATCGGCGTCTCCTTCGCCGTGGCCATGGTGCTCGGCCCGGTGCTGACCCATCTGTTCGGCCTGCAT 
GGGGCTGTTCTGGTTCACCGCCGGGATGGCGCTGGTcGGCCTGCTGCTGATCCTGTTCTTCGTCCCACAGCC 
GGACCACATGACCCAGCACCGCGAATCCAGCGTGGCGCGCCAGGCCCTGCTGCCGACCCTGAAGCACGGCGA 
CCTGCTGCGCCTGGACGCCGGCATCCTGATCCTCCACGCCATCCTCATGGCCAGCTTCGTCGCCTTGCCGCT 
GGCGCTGGTGCACGAGGGTGGCCTGCCCAAGGAGCAGCACTGGTGGGTCTACCTGACCGCGCTGTTGGTCGG 
TTTCTTCGGCATGGTGCCGTTCATCATCTACGCCGAGAAGAAGCGTCGCATGAAGCGCGTGCTGACCGGCGC 
GGTGGCGACCCTGCTGGCCTGCGAACTGTTCTTCCTGGTCTTCGGTCACAGCCTGGCCATGCTGGTGGTCGG 
CACGGTGGTGTTCTTCACTGCCTTCAACCTGCTCGAAGCCTCGCTGCCGTCGCTGGTCAGCAAGGTCTCGCC 
GGCCGGCGGCAAGGGCACGGCGATGGGGGTGTATTCCACCAGCCAGTTCCTCGGTGCGGCGCTGGGCGGCAT 
CCTCGGCGGCTGGATGTTCCAGCACGGCGGGCTGAGCATGGTGTTCATCGGATGCGCGGTGCTCGCTGCCCT 
CTGGCTGGCGATTGCTGTTACCATGCGCGAACCGCCTTATGTGACCAGCATTCGCCTGCCGCTCGCGCCCGC 
CGCGCTGCAGGACGCGGTGCTGGTCCAGCGATTCAGGGCGTTGCCCGGTGTGGCAGACGCCGTGGTGGTGGC 
CGAGGAGGCCGCCGCCTATGTCAAAGTGGATACCCAACAAGTGGATCGCACCGCCCTCGAGCGCCTGGCCCA 
GGCCGCGCCGGGCGGATGCTGAACCTTAGGAGAACGTCATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTG 
GTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAATGCGGTGA