ViewGene

Locus Name:
GeneID:
Location:

GeneID:6603
TrivialName: PA14_09560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09560
PAO1 Ortholog Locus:
Sequence Length:954
Protein Length:317
Start: 822790
Stop: 823743
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN04550.1| (AY123045) hypothetical protein [Erwinia pyrifoliae]
Identities = 69/211 (32%), Positives = 97/211 (45%), Gaps = 6/211 (2%)
Sequence:
ATGGGCAACTCCTTGGCTCGCTATTGTTCTGATGGCTCGGGGTTGGACCGGAGCCAGGCCGTTGGGTTCGCC
CCTGGCCGCTCAGCCGCCGGCCTGGCCCAGCACGCCGCGCCAGCGTTCGAAGGCGGCGGTCGCGTAGCCTTC
GCGCCAGACCAGCCAGGTGTCTACTTCGGCAAGGGGCAGGCTGCGCAGCGGCGGTGTGCCGAGCAGTTGCAG
CACCGAGCGCGGCAGCACGCCGACACAGGCGCCGGCGGCGACGCAGGCGAGGATCGCATGGTAGGAGCCGAC
TTCCTGCACCGTCAGCGGCGTGCCCAGGCTGTCCTCGGCCAGTTGCCGGTAGGTGCAGCCACGGGCGAAGCC
GGCCAGGGTGCGCAGGCGCACCTCGGCGACGTCGTGGACCGGCGGGTGTTCGGCCGGCAGGATCATCAGCAG
TTCCTCGCGGAACAGCGGCTCGCCGCGCAGGCCGCTGCCATCGAGTTCGCCGGCCCAGCCCGGGCCGGCGGC
CACCAGCGCGCAATCCAGGCGCCGCGCCCGCACCCCATCGAACAACGCGCGACTGGTGCCGGTGGAGACTTC
CAGGGCGACCCGCGGACAGGCCTTGTGATAGCTCGCCAGCAGCGCCGGCAGGCGGCTGGCCGCGGTGCTTTC
CATGCTGCCCAGGCGCAGGCGCCCGCCGGGCTCGGCGGGATGCATCGACTGGCGCGCCTCGTCGGCGAGAGC
CAGCAACTGCTCGGCATAGGCGAGGAATTCGCTGCCGCGTTCGGTCAGGCTCATGCGCTTGCCGTCGCGCAG
GAACAGTTCGACGCCCAGGTCCTCCTCGAGCTGGCGGATCCGCGTGGTGACGTTCGACTGCGCTCGCTGCAA
CTGCTGGGCGGCGCGGGTGACGCTGGCTTCGTGGGCGACCGCGCGGAAGATTTCGAGGGAGGAAAGGTCCAT
CGATTTATCTCTTTATGA
Translation:
MGNSLARYCSDGSGLDRSQAVGFAPGRSAAGLAQHAAPAFEGGGRVAFAPDQPGVYFGKGQAAQRRCAEQLQ
HRARQHADTGAGGDAGEDRMVGADFLHRQRRAQAVLGQLPVGAATGEAGQGAQAHLGDVVDRRVFGRQDHQQ
FLAEQRLAAQAAAIEFAGPARAGGHQRAIQAPRPHPIEQRATGAGGDFQGDPRTGLVIARQQRRQAAGRGAF
HAAQAQAPAGLGGMHRLARLVGESQQLLGIGEEFAAAFGQAHALAVAQEQFDAQVLLELADPRGDVRLRSLQ
LLGGAGDAGFVGDRAEDFEGGKVHRFISL*
AnnotationID:6604GeneID:6603
AnnotatorUID: diggins
Modification Date/Time: 2005-04-01 05:05:44
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:12982
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:30303
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49605How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 4131147Stop: 4130194
Length: 954
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGGCAACTCCTTGGCTCGCTATTGTTCTGATGGCTCGGGGTTGGACCGGAGCCAGGCCGTTGGGTTCGCC
CCTGGCCGCTCAGCCGCCGGCCTGGCCCAGCACGCCGCGCCAGCGTTCGAAGGCGGCGGTCGCGTAGCCTTC
GCGCCAGACCAGCCAGGTGTCTACTTCGGCAAGGGGCAGGCTGCGCAGCGGCGGTGTGCCGAGCAGTTGCAG
CACCGAGCGCGGCAGCACGCCGACACAGGCGCCGGCGGCGACGCAGGCGAGGATCGCATGGTAGGAGCCGAC
TTCCTGCACCGTCAGCGGCGTGCCCAGGCTGTCCTCGGCCAGTTGCCGGTAGGTGCAGCCACGGGCGAAGCC
GGCCAGGGTGCGCAGGCGCACCTCGGCGACGTCGTGGACCGGCGGGTGTTCGGCCGGCAGGATCATCAGCAG
TTCCTCGCGGAACAGCGGCTCGCCGCGCAGGCCGCTGCCATCGAGTTCGCCGGCCCAGCCCGGGCCGGCGGC
CACCAGCGCGCAATCCAGGCGCCGCGCCCGCACCCCATCGAACAACGCGCGACTGGTGCCGGTGGAGACTTC
CAGGGCGACCCGCGGACAGGCCTTGTGATAGCTCGCCAGCAGCGCCGGCAGGCGGCTGGCCGCGGTGCTTTC
CATGCTGCCCAGGCGCAGGCGCCCGCCGGGCTCGGCGGGATGCATCGACTGGCGCGCCTCGTCGGCGAGAGC
CAGCAACTGCTCGGCATAGGCGAGGAATTCGCTGCCGCGTTCGGTCAGGCTCATGCGCTTGCCGTCGCGCAG
GAACAGTTCGACGCCCAGGTCCTCCTCGAGCTGGCGGATCCGCGTGGTGACGTTCGACTGCGCTCGCTGCAA
CTGCTGGGCGGCGCGGGTGACGCTGGCTTCGTGGGCGACCGCGCGGAAGATTTCGAGGGAGGAAAGGTCCAT
CGATTTATCTCTTTATGA