ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6589

TrivialName: PA14_10060

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_10060

PAO1 Ortholog Locus:

Sequence Length: 1563

Protein Length: 520

Start: 866346

Stop: 864784

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens] Identities = 164/535 (30%), Positives = 191/535 (35%), Gaps = 118/535 (22%)

Sequence:

GTGGCCCACCACGGAGATACCGACCATGACCATCCAGTCCATCCTGCAATCCTACGAGACCGCCCTCAACGC
CAACGACATCGACGCCATCCTCGATCTCTACGGCGAAGCGCCGGTATTCATGCCGCAGCACGCCCCGGCCCT
GGTCGGCCGCGAGGCAGTCCGCGCCGGCTACCAGCAAGTGTTCGCCAGTATCAAGTTGCAGATCCGCTTCGA
CATCCACGAGGTCGAGGTCATCGGCGACTGGGCCTGGGCCCGCACCAGTTCGGCCGGCCGCACCCGCCTCCT
GGCCGAAGACGTGGAAATCGCGGAGGGCAACAACGAGCTGTTCGTGTTCCGGCGCGAACACGGCCACTGGAA
GATCCACCGCTATCTCTTCGCCACCAACCAACCGCGCGCCTGAGGAGCCACCGACATGAAAGCCTACGTCAT
CGAACAGCCTGGCGGCCCGGAAGTCCTGCGCCTGCACGACATCGCCTCGCCCGAACCGAACGCCAACGAAGT
ACGGATACGCGTGCGTGCCTTCGGCCTGAACCGCGCCGAACTCTACCGGCGCGCCGGCAAGATGGGGCCGAT
CGCCGGGCCGGTGGTACCCGGTATCGAAGCGGTCGGCGAAGTCCTTCAGGACCCGGCCGGGCAATTCCGGGT
CGGCCAGCGGGTCGCCACCGCGATGGGCGGCATGCAGTTCAGCCGCAACGGCAGCTACGCGGAAGAGGTCAC
GGTCCTGCGCAGCAATGTGGTGGCCTTGCCGGACAGCGAACTGTCCTGGGAAGAGCTGGCGGCGCTGCCACA
GGCCTACCTGACCGTATGGGGCGCCCTGGATCGCAGCCTGGCGATCCAGCCTGGGCAGACCCTGCTGGTACG
CGGCGCCACCTCTTCGGTCGGCCTGGCCGCCCTGACCTACGCCAAGGCACGCGGCCTGCGGGTGCTAGCCAG
TACCCGCAGCGCGGAGCACACGGCGCGCCTGCGGCAGTTGGGCGCCGACCAGGTGTTCATCGACGACGGCGA
ACTCTGCGCGTCGATACTCGCGGCGGCGCCGGAAGGGGTGGACGCCGCGCTCGAGGTGGTCGGCGCGCCAAC
CCTGCGCGACAGCGTCCGCTGCCTGCGCCCGTTCGGCTCGGTGTGCGTGATCGGTCTGCTCGGCGGCCCGCC
GTTGCTCGAACAGTTCCAGTTGATGCAGGACCTGCCCGGCGCGACCCGCCTGAGCTTCTTCCCCAGCGGCCT
GCTCGGAGGCGCGTACATGGACCTGGGCGAGTCGCCACTGGGCTGGGTGGTGCGGGAACGGACCGCCGGCCG
CCTGCCCTCTCTGCTCTCCGCCGCCTTCGACTTCGACGACCTGCCCCGCGCCCACAGCCTCATGGAGGCCAA
TCGCGCGTTCGGCAAGTTCGTCGTCCGTGTCTAGAGGAGAACCGACCATGCTCCGTATTCCCCTTGCCCGAC
TGGCGCTTCCGTTCCTGTTCGCCAGCCTCTCGCCGTTCGCGGCGCACACCGCCACAGCGGCCCCGGATACCA
ACGTCGAGACTGCCGTCACCCGGCAGTTGGAACGCTATGAACAGGCACTGA

Translation:

MAHHGDTDHDHPVHPAILRDRPQRQRHRRHPRSLRRSAGIHAAARPGPGRPRGSPRRLPASVRQYQVADPLR
HPRGRGHRRLGLGPHQFGRPHPPPGRRRGNRGGQQRAVRVPARTRPLEDPPLSLRHQPTARLRSHRHESLRH
RTAWRPGSPAPARHRLARTERQRSTDTRACLRPEPRRTLPARRQDGADRRAGGTRYRSGRRSPSGPGRAIPG
RPAGRHRDGRHAVQPQRQLRGRGHGPAQQCGGLAGQRTVLGRAGGAATGLPDRMGRPGSQPGDPAWADPAGT
RRHLFGRPGRPDLRQGTRPAGASQYPQRGAHGAPAAVGRRPGVHRRRRTLRVDTRGGAGRGGRRARGGRRAN
PARQRPLPAPVRLGVRDRSARRPAVARTVPVDAGPARRDPPELLPQRPARRRVHGPGRVATGLGGAGTDRRP
PALSALRRLRLRRPAPRPQPHGGQSRVRQVRRPCLEENRPCSVFPLPDWRFRSCSPASRRSRRTPPQRPRIP
TSRLPSPGSWNAMNRH*

AnnotationID:6590 GeneID:6589

AnnotatorUID: danlee

Modification Date/Time: 2005-10-19 16:04:51

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: INACTIVE

Pathway:

Homology:

gi|66857206|ref|ZP_00401261.1|  hypothetical protein AdehDRAFT_1030 [Anaeromyxobacter 
dehalogenans 2CP-C]
     Length=2268
     Score =  123 bits (308),  Expect = 2e-26
     Identities = 179/574 (31%), Positives = 202/574 (35%), Gaps = 117/574 (20%)

Structural Features:

Genomic Context:

Comment:

ReferenceID:16349

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17079

Author/Investigator(s):

Title: CDD Ssearch

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6589_CDD.html

URL:

ReferenceID:30276

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

GC ORFID: `49591`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `4087591`	Stop: `4089153`
Length: `1563`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGGCCCACCACGGAGATACCGACCATGACCATCCAGTCCATCCTGCAATCCTACGAGACCGCCCTCAACGC CAACGACATCGACGCCATCCTCGATCTCTACGGCGAAGCGCCGGTATTCATGCCGCAGCACGCCCCGGCCCT GGTCGGCCGCGAGGCAGTCCGCGCCGGCTACCAGCAAGTGTTCGCCAGTATCAAGTTGCAGATCCGCTTCGA CATCCACGAGGTCGAGGTCATCGGCGACTGGGCCTGGGCCCGCACCAGTTCGGCCGGCCGCACCCGCCTCCT GGCCGAAGACGTGGAAATCGCGGAGGGCAACAACGAGCTGTTCGTGTTCCGGCGCGAACACGGCCACTGGAA GATCCACCGCTATCTCTTCGCCACCAACCAACCGCGCGCCTGAGGAGCCACCGACATGAAAGCCTACGTCAT CGAACAGCCTGGCGGCCCGGAAGTCCTGCGCCTGCACGACATCGCCTCGCCCGAACCGAACGCCAACGAAGT ACGGATACGCGTGCGTGCCTTCGGCCTGAACCGCGCCGAACTCTACCGGCGCGCCGGCAAGATGGGGCCGAT CGCCGGGCCGGTGGTACCCGGTATCGAAGCGGTCGGCGAAGTCCTTCAGGACCCGGCCGGGCAATTCCGGGT CGGCCAGCGGGTCGCCACCGCGATGGGCGGCATGCAGTTCAGCCGCAACGGCAGCTACGCGGAAGAGGTCAC GGTCCTGCGCAGCAATGTGGTGGCCTTGCCGGACAGCGAACTGTCCTGGGAAGAGCTGGCGGCGCTGCCACA GGCCTACCTGACCGTATGGGGCGCCCTGGATCGCAGCCTGGCGATCCAGCCTGGGCAGACCCTGCTGGTACG CGGCGCCACCTCTTCGGTCGGCCTGGCCGCCCTGACCTACGCCAAGGCACGCGGCCTGCGGGTGCTAGCCAG TACCCGCAGCGCGGAGCACACGGCGCGCCTGCGGCAGTTGGGCGCCGACCAGGTGTTCATCGACGACGGCGA ACTCTGCGCGTCGATACTCGCGGCGGCGCCGGAAGGGGTGGACGCCGCGCTCGAGGTGGTCGGCGCGCCAAC CCTGCGCGACAGCGTCCGCTGCCTGCGCCCGTTCGGCTCGGTGTGCGTGATCGGTCTGCTCGGCGGCCCGCC GTTGCTCGAACAGTTCCAGTTGATGCAGGACCTGCCCGGCGCGACCCGCCTGAGCTTCTTCCCCAGCGGCCT GCTCGGAGGCGCGTACATGGACCTGGGCGAGTCGCCACTGGGCTGGGTGGTGCGGGAACGGACCGCCGGCCG CCTGCCCTCTCTGCTCTCCGCCGCCTTCGACTTCGACGACCTGCCCCGCGCCCACAGCCTCATGGAGGCCAA TCGCGCGTTCGGCAAGTTCGTCGTCCGTGTCTAGAGGAGAACCGACCATGCTCCGTATTCCCCTTGCCCGAC TGGCGCTTCCGTTCCTGTTCGCCAGCCTCTCGCCGTTCGCGGCGCACACCGCCACAGCGGCCCCGGATACCA ACGTCGAGACTGCCGTCACCCGGCAGTTGGAACGCTATGAACAGGCACTGA