ViewGene
Locus Name:
GeneID:
Location:

GeneID:6587
TrivialName: PA14_10080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10080
PAO1 Ortholog Locus:
Sequence Length:378
Protein Length:125
Start: 866321
Stop: 865944
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD33732.1| (AJ488511) hypothetical protein [Escherichia coli]
Identities = 33/114 (28%), Positives = 45/114 (39%), Gaps = 2/114 (1%)
Sequence:
ATGACCATCCAGTCCATCCTGCAATCCTACGAGACCGCCCTCAACGCCAACGACATCGACGCCATCCTCGAT
CTCTACGGCGAAGCGCCGGTATTCATGCCGCAGCACGCCCCGGCCCTGGTCGGCCGCGAGGCAGTCCGCGCC
GGCTACCAGCAAGTGTTCGCCAGTATCAAGTTGCAGATCCGCTTCGACATCCACGAGGTCGAGGTCATCGGC
GACTGGGCCTGGGCCCGCACCAGTTCGGCCGGCCGCACCCGCCTCCTGGCCGAAGACGTGGAAATCGCGGAG
GGCAACAACGAGCTGTTCGTGTTCCGGCGCGAACACGGCCACTGGAAGATCCACCGCTATCTCTTCGCCACC
AACCAACCGCGCGCCTGA
Translation:
MTIQSILQSYETALNANDIDAILDLYGEAPVFMPQHAPALVGREAVRAGYQQVFASIKLQIRFDIHEVEVIG
DWAWARTSSAGRTRLLAEDVEIAEGNNELFVFRREHGHWKIHRYLFATNQPRA*
AnnotationID:6588GeneID:6587
AnnotatorUID: danlee
Modification Date/Time: 2005-10-19 15:03:19
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|46313119|ref|ZP_00213711.1|  COG4319: Ketosteroid isomerase homolog [Burkholderia cepacia R18194]
     Length=149
     Score =  108 bits (270),  Expect = 5e-23
     Identities = 52/122 (42%), Positives = 84/122 (68%), Gaps = 3/122 (2%)







 
Structural Features:
COG4319, Ketosteroid isomerase homolog [Function unknown].
             CD-Length = 137 residues,  84.7% aligned
             Score = 47.3 bits (112), Expect = 6e-07

cd00781, ketosteroid_isomerase, ketosteroid isomerase.
             CD-Length = 122 residues, only  46.7% aligned
             Score = 34.9 bits (80), Expect = 0.003






   
Genomic Context:






   
Comment:


















    ReferenceID:12951




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17080




  
Author/Investigator(s):
        





  
Title:
        CDD search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6587_CDD.html


    		




 
URL:

















    ReferenceID:30272




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49589How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 4087616Stop: 4087993

          
Length: 378


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGACCATCCAGTCCATCCTGCAATCCTACGAGACCGCCCTCAACGCCAACGACATCGACGCCATCCTCGAT 
CTCTACGGCGAAGCGCCGGTATTCATGCCGCAGCACGCCCCGGCCCTGGTCGGCCGCGAGGCAGTCCGCGCC 
GGCTACCAGCAAGTGTTCGCCAGTATCAAGTTGCAGATCCGCTTCGACATCCACGAGGTCGAGGTCATCGGC 
GACTGGGCCTGGGCCCGCACCAGTTCGGCCGGCCGCACCCGCCTCCTGGCCGAAGACGTGGAAATCGCGGAG 
GGCAACAACGAGCTGTTCGTGTTCCGGCGCGAACACGGCCACTGGAAGATCCACCGCTATCTCTTCGCCACC 
AACCAACCGCGCGCCTGA