ViewGene

Locus Name:
GeneID:
Location:

GeneID:6576
TrivialName: PA14_10580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10580
PAO1 Ortholog Locus:
Sequence Length:1518
Protein Length:505
Start: 911140
Stop: 912657
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
ATGGCCCATGGCTGCGCTGAGGTCGGCCGGACCGATGAACACGCCGTCGACACCCTCGACAGCGGCGATCGC
GTCGAGGTTGGCCAGGCCCTCCAGGTTTTCCACCTGGACCAGCAGGCACATCTGCTCGTCGGCGTGGTCCAG
GTATTCCGCCACGCTGTTCCAGCGCGAAGCCCGGGCCAGCGCACTGCCGACCCCGCGCACGCCCGCCGGCGG
ATAGCGCACGGCGCGCACCAGGCCTTCGGCCTGGGCGGCGCTGTCGACCATCGGTACCAGCAGGGTCTGTGC
GCCGATGTCGAGCAATTGCTTGATCAGCGCGGTGTCGCCCTGCACCGGGCGAATCACCGGCTGGCCGGGGTA
GGGCGCCAGCGCCTGCAACTGGCCGAGCAGGCTGCGCAGGTCGTTGGGCGCGTGCTCGCCGTCCAGCAGCAG
CCAGTCGAAGCCGGCGTTGGCGGCCAGCTCCGCGCAGTAGGGATCGGCCAGGCCGAGCCACAGGCCGATCTG
CGCCTCGCCGCTGCGCAGGCGTTGCTTGAAGCGATTGACGGGCAGGTCCATGGAAATGCCTCCTCAGACGAA
ACGGCAGGAGATACTGCCGAGCAGATCGTAGTCGACGTGGAAGGTGTCCCCCGGCGCGGCCGCCACCGGGCG
GGTGAAGGAGCCGCCGAGGATCACCTGGCCGGCCTCCAGGCAGACGCCGTAGGGCGCCAGCTTGTTGGCCAG
CCAGGCGACGCCCTTGGCCGGGTGGTTGAGCACCGCGGCGGAGACGCCAGACTCCTCGATCACGCCATTGCG
GTAGAGGATCGCCGGTACCCGCCGCAGGTCGATATCGCCTGGCCGCACGGCCCGGCCGCCCATCACCACGCC
GGCGTTGGCGGCGTTGTCGGAGATGGTGTCGAAGACCTTGCGCGTGACTTTCGTTTGCGGGTCGACCTGCTG
GATGCGCGCATCGATGATTTCCAGCGCCGGGATCACCCACTCGGTGGCCTCGAGCACGTCGAACAGGGTGCA
GCCCGGTCCCTTCAGCGGCTTGCCGAGGATGAACGCCAGCTCCACCTCGACCCGCGGCACGATGAAGCGCTG
GAAGGGGATGTCGCTGCCTTCCTCGAAGAACATGTCGTCGAGCAAGGCGCCGTAGTCCGGCTCGCTGATGTT
CGACGAGACCTGCATGGCGCGCGAGGTCAGGCCGATCTTGTGGCCCTTGAGTACGCGCCCGTCGGCGATCTT
GCGCTCGACCCAGGCGCGCTGGATGGCGTAGGCGTCCTCGATGGCGATGTCCGGGTAGTCGAGGGAGAACTG
CCTTACCTGCTGGCGCGAGCGTTCGGCGGCGTCGAGGCGGTTGGCGGCTTCCTGGATCAGGCGGGGATCGAG
CATGGTCGGGGTCTCTCGGTTCAGCGTGGGTTGACCACGGCGGCGGGGGTCCGCAGGACCAGGCCGGCGCCG
AGGGCGATGAGGATGGCCAGCAGGTACAGGGCCAGGCTGGCGCTCTGGGTGGTGTCGCGCATCCAGCCGATC
AGGTAG
Translation:
MAHGCAEVGRTDEHAVDTLDSGDRVEVGQALQVFHLDQQAHLLVGVVQVFRHAVPARSPGQRTADPAHARRR
IAHGAHQAFGLGGAVDHRYQQGLCADVEQLLDQRGVALHRANHRLAGVGRQRLQLAEQAAQVVGRVLAVQQQ
PVEAGVGGQLRAVGIGQAEPQADLRLAAAQALLEAIDGQVHGNASSDETAGDTAEQIVVDVEGVPRRGRHRA
GEGAAEDHLAGLQADAVGRQLVGQPGDALGRVVEHRGGDARLLDHAIAVEDRRYPPQVDIAWPHGPAAHHHA
GVGGVVGDGVEDLARDFRLRVDLLDARIDDFQRRDHPLGGLEHVEQGAARSLQRLAEDERQLHLDPRHDEAL
EGDVAAFLEEHVVEQGAVVRLADVRRDLHGARGQADLVALEYAPVGDLALDPGALDGVGVLDGDVRVVEGEL
PYLLARAFGGVEAVGGFLDQAGIEHGRGLSVQRGLTTAAGVRRTRPAPRAMRMASRYRARLALWVVSRIQPI
R*
AnnotationID:6577GeneID:6576
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 13:01:43
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:12932
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:30251
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49578How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 4042797Stop: 4041280
Length: 1518
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGCCCATGGCTGCGCTGAGGTCGGCCGGACCGATGAACACGCCGTCGACACCCTCGACAGCGGCGATCGC
GTCGAGGTTGGCCAGGCCCTCCAGGTTTTCCACCTGGACCAGCAGGCACATCTGCTCGTCGGCGTGGTCCAG
GTATTCCGCCACGCTGTTCCAGCGCGAAGCCCGGGCCAGCGCACTGCCGACCCCGCGCACGCCCGCCGGCGG
ATAGCGCACGGCGCGCACCAGGCCTTCGGCCTGGGCGGCGCTGTCGACCATCGGTACCAGCAGGGTCTGTGC
GCCGATGTCGAGCAATTGCTTGATCAGCGCGGTGTCGCCCTGCACCGGGCGAATCACCGGCTGGCCGGGGTA
GGGCGCCAGCGCCTGCAACTGGCCGAGCAGGCTGCGCAGGTCGTTGGGCGCGTGCTCGCCGTCCAGCAGCAG
CCAGTCGAAGCCGGCGTTGGCGGCCAGCTCCGCGCAGTAGGGATCGGCCAGGCCGAGCCACAGGCCGATCTG
CGCCTCGCCGCTGCGCAGGCGTTGCTTGAAGCGATTGACGGGCAGGTCCATGGAAATGCCTCCTCAGACGAA
ACGGCAGGAGATACTGCCGAGCAGATCGTAGTCGACGTGGAAGGTGTCCCCCGGCGCGGCCGCCACCGGGCG
GGTGAAGGAGCCGCCGAGGATCACCTGGCCGGCCTCCAGGCAGACGCCGTAGGGCGCCAGCTTGTTGGCCAG
CCAGGCGACGCCCTTGGCCGGGTGGTTGAGCACCGCGGCGGAGACGCCAGACTCCTCGATCACGCCATTGCG
GTAGAGGATCGCCGGTACCCGCCGCAGGTCGATATCGCCTGGCCGCACGGCCCGGCCGCCCATCACCACGCC
GGCGTTGGCGGCGTTGTCGGAGATGGTGTCGAAGACCTTGCGCGTGACTTTCGTTTGCGGGTCGACCTGCTG
GATGCGCGCATCGATGATTTCCAGCGCCGGGATCACCCACTCGGTGGCCTCGAGCACGTCGAACAGGGTGCA
GCCCGGTCCCTTCAGCGGCTTGCCGAGGATGAACGCCAGCTCCACCTCGACCCGCGGCACGATGAAGCGCTG
GAAGGGGATGTCGCTGCCTTCCTCGAAGAACATGTCGTCGAGCAAGGCGCCGTAGTCCGGCTCGCTGATGTT
CGACGAGACCTGCATGGCGCGCGAGGTCAGGCCGATCTTGTGGCCCTTGAGTACGCGCCCGTCGGCGATCTT
GCGCTCGACCCAGGCGCGCTGGATGGCGTAGGCGTCCTCGATGGCGATGTCCGGGTAGTCGAGGGAGAACTG
CCTTACCTGCTGGCGCGAGCGTTCGGCGGCGTCGAGGCGGTTGGCGGCTTCCTGGATCAGGCGGGGATCGAG
CATGGTCGGGGTCTCTCGGTTCAGCGTGGGTTGACCACGGCGGCGGGGGTCCGCAGGACCAGGCCGGCGCCG
AGGGCGATGAGGATGGCCAGCAGGTACAGGGCCAGGCTGGCGCTCTGGGTGGTGTCGCGCATCCAGCCGATC
AGGTAG