ViewGene

Locus Name:
GeneID:
Location:

GeneID:6557
TrivialName: PA14_11540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11540
PAO1 Ortholog Locus:
Sequence Length:2532
Protein Length:843
Start: 997813
Stop: 1000344
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK22724.1| (AE005749) hypothetical protein [Caulobacter crescentus CB15]
Identities = 224/862 (25%), Positives = 305/862 (35%), Gaps = 160/862 (18%)
Sequence:
TTGGCGCTACTGCCggtcGAGACGCTGGCGTACCGCCTTTTCgATGCCCGCGGCATCCAGGCCGCATTCGGC
GAGCATCTCGCTGGGCTTGGCGTGTTCGACGTAGTAGTCGGGCAGGCCCAGTTGCAGCAGCGGGACTTCGAG
GCCCTCGCTGGCGAGGAACTCGCCGACCGCCGAGCCGGCGCCGCCCATCACGGCGTTTTCCTCGATGGTCAC
CAGCAGTTCGTGGCTGCCCGCCAATTCGCGTACCAGGGCTTCGTCGAGGGGTTTGACGAAACGCATGTCGAC
GACTGTGGCGTCGAGGCTTTCGGCAACCTTCATCGCCTCCGCCAACTGCACGCCGAAGACCAGCAGTGCGAC
CCTGCCGCCGCGCCGACGGACCACGCCCTTGCCGATCTCCACCGGTTGCAGGTCCGGATCGATCGGATGGTT
GGGGCCGCTGCCGCGCGGATAGCGCACCGCGGCCGGGCCATCGAACAGGTAGCCGGTGGTGAGCAGCTTGCG
CAGCTCGTCCTCGTCGCTGGGGGTCATCACCAGCATGCCGGGGATGCAGCGCAGGTAGGAGATGTCGAAGCT
ACCGGCGTGGGTCGGGCCGTCCTCGCCGACCAGGCCGGCGCGGTCGATGGCGAACAGCACGTCGAGGTGCTG
CACGGCGACGTCATGGATCAACTGGTCGTAGGCGCGCTGGAGGAAGGTCGAGTAGATCGCCACCACCGGCTT
CATGCCCTCGCAGGCCATGCCGGCGGCCAGGGTCACGGCATGCTGTTCGGCGATGGCGACGTCGAAGTAGCG
TTCCGGGTAGCGTTCGCTGAAGGCCACCAGGTCGGAACCTTCCTTCATCGCCGGGGTGATGCCGAGCAGGCG
CGCGTCCTGGGCGGCCATGTCGCACAGCCACTGGCCGAAGACGCTGGAATACTTGGGTCCGCCGGTCTTCTT
CGGCGCACTGCCGGGAGCTTCCAGCTTGGTGATCGCGTGGTAGCCGATCGGATCCAGTTCGGCCGGGGCGAA
GCCCTTGCCTTTCTTGGTCACCACATGGAGGAACTGCGGGCCCTTCATGTCGCGCATGTTGCGCAGGGTAGC
CACCAGGGTCGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCGAGCTCCTCGAACAGGGTGCC
GGGGACCAGCATGCCCTTGGCGTATTCCTCGGTGCGCCGGGCGATCTCCCAGGCCCCGGGCAGGCGCGAGAG
CACCTTCTTGCTGCCCTCGCGCATGCTGCTATAGGTGCGGCTGGAGAGGATCTTCGCCAGGTAGTTGGAGAG
CCCGCCGACGTTGTGCGAGATCGACATGTCGTTGTCGTTGAGGATCACCAGCATGTCGGCGTCGACTTCCGA
GGCGTGGTTGAGTGCCTCGAAGGCCATGCCGGCGGTCAGCGCACCGTCGCCGATCACGGCCACCGACTTACG
CTCCTTGCCTTGCAGGCGGGCGGCGATGGCCATGCCCAGGGCGGCGCTGATGGAGGTGCTGGAGTGGCCGAC
GCCGAAGGTGTCGTACTCGCTCTCTGCGCGGCGCGGGAAGGCCGCCAGGCCGTTCTTCTGGCGCAGGGTGCC
CATCAGCTCGCGGCGTTCGGTGAGGATCTTGTGCGGATAGGCCTGGTGGCCGACGTCCCAGACCAGGCGATC
GTCCGGAGTGTCGAAGACGTAGTGCAGGGCGATGGTCAGCTCGACCACGCCGAGGCCGGCGCCGAAATGACC
GCCGGTCTGCCCGACGGTATACAGCAGGTACTGGCGCAGCTCGTCGGCCAGGGTTTCCAGGTCCGCCTCGCC
CAGCCGGCGCAGTTCGGCCGGCGAAGAGGCGCGGTCGAGCAGGGGCGTGGCGGGGCGCTCGCGGGGAATCTC
ATGGAGCGTCTTGGGCATCAGGCTATCGTTATGCAATCCGGAGAGGCCAGCAGTTTACCTGATGCACCGGCC
GCGCCCAAGCAAGGGAGCCCCTACCTTTGCCGGGGACTTCCGACGACCCGTCGGTCAGTTGCGTCGCTCGAC
GATGTAGCGGGCCAGTTGGCGCAGCGGGTCGGCGCTCGGCGGAAAACCGTCGAGGGCGGCCAGGGCCAGGTC
GCGCAGCTCCAGGGCATAGCCTTTGGCGGCCTCCAGGCCGAGCAGGGCGGGATAGGTCGGCTTGTTGTGCGC
CTGGTCCTTGCCCTGGGTCTTGCCGAGGGTGGCGGTGTCGCTTTCCACGTCGAGGATGTCGTCCTGCACCTG
GAAGGCCAGGCCGATCGCTTCGGCGTAGCGTTCCAGGGCGGCCAGCGCGGCGGGCTCGGCGCGACCGCTGGC
GAGGGCGCCGAGGCGCACGCTGGCTTCGATCAGCGCGCCGGTCTTGTGCCGGTGCATGACTTCCAGGGCCGC
CTGGTCGAGGGCCACGCCGACCGAGCCGAGGTCGATCGCCTGGCCGCCGACCATGCCGGCGGAGCCTGCGGC
GCGCGCCAGGCGGGTGAGCATTTCCAGACAGACGGCATGTTCCTGTGGATTGCGCCGGGTGTCGGCGAGCAC
TTCGAAGGCTAG
Translation:
MALLPVETLAYRLFDARGIQAAFGEHLAGLGVFDVVVGQAQLQQRDFEALAGEELADRRAGAAHHGVFLDGH
QQFVAARQFAYQGFVEGFDETHVDDCGVEAFGNLHRLRQLHAEDQQCDPAAAPTDHALADLHRLQVRIDRMV
GAAAARIAHRGRAIEQVAGGEQLAQLVLVAGGHHQHAGDAAQVGDVEATGVGRAVLADQAGAVDGEQHVEVL
HGDVMDQLVVGALEEGRVDRHHRLHALAGHAGGQGHGMLFGDGDVEVAFRVAFAEGHQVGTFLHRRGDAEQA
RVLGGHVAQPLAEDAGILGSAGLLRRTAGSFQLGDRVVADRIQFGRGEALAFLGHHMEELRALHVAHVAQGS
HQGRQVVAVDRADVVPAELLEQGAGDQHALGVFLGAPGDLPGPGQAREHLLAALAHAAIGAAGEDLRQVVGE
PADVVRDRHVVVVEDHQHVGVDFRGVVECLEGHAGGQRTVADHGHRLTLLALQAGGDGHAQGGADGGAGVAD
AEGVVLALCAAREGRQAVLLAQGAHQLAAFGEDLVRIGLVADVPDQAIVRSVEDVVQGDGQLDHAEAGAEMT
AGLPDGIQQVLAQLVGQGFQVRLAQPAQFGRRRGAVEQGRGGALAGNLMERLGHQAIVMQSGEASSLPDAPA
APKQGSPYLCRGLPTTRRSVASLDDVAGQLAQRVGARRKTVEGGQGQVAQLQGIAFGGLQAEQGGIGRLVVR
LVLALGLAEGGGVAFHVEDVVLHLEGQADRFGVAFQGGQRGGLGATAGEGAEAHAGFDQRAGLVPVHDFQGR
LVEGHADRAEVDRLAADHAGGACGARQAGEHFQTDGMFLWIAPGVGEHFEG*
AnnotationID:6558GeneID:6557
AnnotatorUID: urbach
Modification Date/Time: 2004-10-05 18:06:24
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:16319
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:30214
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49559How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 3956124Stop: 3953593
Length: 2532
Start Codon: TTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGGCGCTACTGCCggtcGAGACGCTGGCGTACCGCCTTTTCgATGCCCGCGGCATCCAGGCCGCATTCGGC
GAGCATCTCGCTGGGCTTGGCGTGTTCGACGTAGTAGTCGGGCAGGCCCAGTTGCAGCAGCGGGACTTCGAG
GCCCTCGCTGGCGAGGAACTCGCCGACCGCCGAGCCGGCGCCGCCCATCACGGCGTTTTCCTCGATGGTCAC
CAGCAGTTCGTGGCTGCCCGCCAATTCGCGTACCAGGGCTTCGTCGAGGGGTTTGACGAAACGCATGTCGAC
GACTGTGGCGTCGAGGCTTTCGGCAACCTTCATCGCCTCCGCCAACTGCACGCCGAAGACCAGCAGTGCGAC
CCTGCCGCCGCGCCGACGGACCACGCCCTTGCCGATCTCCACCGGTTGCAGGTCCGGATCGATCGGATGGTT
GGGGCCGCTGCCGCGCGGATAGCGCACCGCGGCCGGGCCATCGAACAGGTAGCCGGTGGTGAGCAGCTTGCG
CAGCTCGTCCTCGTCGCTGGGGGTCATCACCAGCATGCCGGGGATGCAGCGCAGGTAGGAGATGTCGAAGCT
ACCGGCGTGGGTCGGGCCGTCCTCGCCGACCAGGCCGGCGCGGTCGATGGCGAACAGCACGTCGAGGTGCTG
CACGGCGACGTCATGGATCAACTGGTCGTAGGCGCGCTGGAGGAAGGTCGAGTAGATCGCCACCACCGGCTT
CATGCCCTCGCAGGCCATGCCGGCGGCCAGGGTCACGGCATGCTGTTCGGCGATGGCGACGTCGAAGTAGCG
TTCCGGGTAGCGTTCGCTGAAGGCCACCAGGTCGGAACCTTCCTTCATCGCCGGGGTGATGCCGAGCAGGCG
CGCGTCCTGGGCGGCCATGTCGCACAGCCACTGGCCGAAGACGCTGGAATACTTGGGTCCGCCGGTCTTCTT
CGGCGCACTGCCGGGAGCTTCCAGCTTGGTGATCGCGTGGTAGCCGATCGGATCCAGTTCGGCCGGGGCGAA
GCCCTTGCCTTTCTTGGTCACCACATGGAGGAACTGCGGGCCCTTCATGTCGCGCATGTTGCGCAGGGTAGC
CACCAGGGTCGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCGAGCTCCTCGAACAGGGTGCC
GGGGACCAGCATGCCCTTGGCGTATTCCTCGGTGCGCCGGGCGATCTCCCAGGCCCCGGGCAGGCGCGAGAG
CACCTTCTTGCTGCCCTCGCGCATGCTGCTATAGGTGCGGCTGGAGAGGATCTTCGCCAGGTAGTTGGAGAG
CCCGCCGACGTTGTGCGAGATCGACATGTCGTTGTCGTTGAGGATCACCAGCATGTCGGCGTCGACTTCCGA
GGCGTGGTTGAGTGCCTCGAAGGCCATGCCGGCGGTCAGCGCACCGTCGCCGATCACGGCCACCGACTTACG
CTCCTTGCCTTGCAGGCGGGCGGCGATGGCCATGCCCAGGGCGGCGCTGATGGAGGTGCTGGAGTGGCCGAC
GCCGAAGGTGTCGTACTCGCTCTCTGCGCGGCGCGGGAAGGCCGCCAGGCCGTTCTTCTGGCGCAGGGTGCC
CATCAGCTCGCGGCGTTCGGTGAGGATCTTGTGCGGATAGGCCTGGTGGCCGACGTCCCAGACCAGGCGATC
GTCCGGAGTGTCGAAGACGTAGTGCAGGGCGATGGTCAGCTCGACCACGCCGAGGCCGGCGCCGAAATGACC
GCCGGTCTGCCCGACGGTATACAGCAGGTACTGGCGCAGCTCGTCGGCCAGGGTTTCCAGGTCCGCCTCGCC
CAGCCGGCGCAGTTCGGCCGGCGAAGAGGCGCGGTCGAGCAGGGGCGTGGCGGGGCGCTCGCGGGGAATCTC
ATGGAGCGTCTTGGGCATCAGGCTATCGTTATGCAATCCGGAGAGGCCAGCAGTTTACCTGATGCACCGGCC
GCGCCCAAGCAAGGGAGCCCCTACCTTTGCCGGGGACTTCCGACGACCCGTCGGTCAGTTGCGTCGCTCGAC
GATGTAGCGGGCCAGTTGGCGCAGCGGGTCGGCGCTCGGCGGAAAACCGTCGAGGGCGGCCAGGGCCAGGTC
GCGCAGCTCCAGGGCATAGCCTTTGGCGGCCTCCAGGCCGAGCAGGGCGGGATAGGTCGGCTTGTTGTGCGC
CTGGTCCTTGCCCTGGGTCTTGCCGAGGGTGGCGGTGTCGCTTTCCACGTCGAGGATGTCGTCCTGCACCTG
GAAGGCCAGGCCGATCGCTTCGGCGTAGCGTTCCAGGGCGGCCAGCGCGGCGGGCTCGGCGCGACCGCTGGC
GAGGGCGCCGAGGCGCACGCTGGCTTCGATCAGCGCGCCGGTCTTGTGCCGGTGCATGACTTCCAGGGCCGC
CTGGTCGAGGGCCACGCCGACCGAGCCGAGGTCGATCGCCTGGCCGCCGACCATGCCGGCGGAGCCTGCGGC
GCGCGCCAGGCGGGTGAGCATTTCCAGACAGACGGCATGTTCCTGTGGATTGCGCCGGGTGTCGGCGAGCAC
TTCGAAGGCTAG