ViewGene
Locus Name:
GeneID:
Location:

GeneID:6551
TrivialName: PA14_11840
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11840
PAO1 Ortholog Locus:
Sequence Length:1374
Protein Length:457
Start: 1026387
Stop: 1027761
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
GeneID6550 (PA14_11850) and GeneID6551 (PA14_11840) replaced by GeneID7419 (PA14_11845). Homology: gb|AAG07407.1|AE004818_13 (AE004818) UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase [Pseudomonas aeruginosa PAO1]
Identities = 132/160 (82%), Positives = 135/160 (84%), Gaps = 8/160 (5%)
Sequence:
TTGATCTGCAGGAGTCTGCATGCACATCCACGTACTCGGCATCTGCGGGACCTTCATGGGCTCGCTGGCCGT
GCTGGCCAAGGAACTGGGCCACCGGGTGACCGGTTCCGACGCCAACGTCTACCCCCCCATGAGCACCCAGCT
GCAAGCCCAGGGCATCGAGCTGATGCAGGGCTACGATCCGGCCCACCTGGAGCCGGCGCCGGACCTGGTAGT
GATCGGCAACGCCCTGTCGCGCGGCAATCCGGCGGTGGAGCATGTCCTGAACAAGGGCCTGCCCTACGTTTC
CGGCCCGCAGTGGCTGGCCGACCACGTGCTGCAAGGACGCTGGGTGCTGGCGGTGGCCGGTACCCACGGCAA
GACCACCACCACCAGCATGCTCGCCTGGGTCCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATCGGCGG
GGTGCCGCAGAACTTCGGGGTTTCGGCGCGCCTGGGCGGTACGCCGTTCTTCGTGGTCGAGGCCGACGAGTA
CGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCATTACCGCCCGCGCACGGCGATCCTGAACAACCT
GGAATTCGACCACGCGGATATCTTCCCCGACCTCGCGGCCATCGAGCGGCAGTTCCACCATCTGGTGCGCAC
CGTGCCGGGCGAGGGCCTGATCATTCGCCCGAGCGCCGAGAAAGCCCTGGAGCGCGTACTCGGGATGGGCTG
CTGGACCCCGGTGCAGACCACCGGCGAAGGCGGCCAGTGGCAGGCGCGCCTGCTCGCCGAGGACGGCTCGCG
CTTCGAGGTGCTGTTCGACGGCATCGTCCAGGGCGAGGTGGACTGGCCGCTGACCGGCCTGCACAACGTCGC
CAACGCCCTCGCCAGCCTGGCGGCGGCGCGCCATGTCGGCGTGGTGCCCAGCCAGGGCGCGGCGGCACTCAG
CGAGTTCCGCAACGTCAAGCGGCGCATGGAGAAGGTCGCGGAGGTCCGGGGCGTGACCCTCtacacGACTTC
GCCCACCATCCGACCGCCATCGCCACCACCCTCGACGGCCTGCGCAAGCAGGTTGGCGCCGATACCCAGGTG
ATCGCCATCGTCGAGCCGCGTTCCAACTCGATGAAGCTCGGCGCTCATCGCGACGGCCTGCCGGACAGCGTG
CGCCAGGCCGACCAGGTGCTCTGGTACGCGCCGCCGAACCTGGGCTGGGACCTGGCCGCCACCGCCGCGCAA
TGCGCGATACCGTCGCAGGTCTGCGATACCCTGGAGGCGATCATCGAGCAGGTGCGCCAGCAGGCCAGGCCC
GGCGCGCAAGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCTTGCACGGCAAGCTGGCCGCGGCGCTGGCC
GAGTGA
Translation:
MICRSLHAHPRTRHLRDLHGLAGRAGQGTGPPGDRFRRQRLPPHEHPAASPGHRADAGLRSGPPGAGAGPGS
DRQRPVARQSGGGACPEQGPALRFRPAVAGRPRAARTLGAGGGRYPRQDHHHQHARLGPGARRHEPGLPDRR
GAAELRGFGAPGRYAVLRGRGRRVRQRLLRQALEVRPLPPAHGDPEQPGIRPRGYLPRPRGHRAAVPPSGAH
RAGRGPDHSPERRESPGARTRDGLLDPGADHRRRRPVAGAPARRGRLALRGAVRRHRPGRGGLAADRPAQRR
QRPRQPGGGAPCRRGAQPGRGGTQRVPQRQAAHGEGRGGPGRDPLHDFAHHPTAIATTLDGLRKQVGADTQV
IAIVEPRSNSMKLGAHRDGLPDSVRQADQVLWYAPPNLGWDLAATAAQCAIPSQVCDTLEAIIEQVRQQARP
GAQVVIMSNGGFGGLHGKLAAALAE*
AnnotationID:6552GeneID:6551
AnnotatorUID: danlee
Modification Date/Time: 2006-03-11 17:05:46
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:16313




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30202




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6551
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
8003
                           PA4020_tr
                           translation of PA4020
                           581
                           31.49
                           34.93
                           254
                           635.0
     

     
     
200070
                           gb|AAG07407.1|AE004818_13
                           (AE004818) UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase [Pseudomonas aeruginosa PAO1]
                           581
                           31.49
                           34.93
                           254
                           635.0
     

     
     
200071
                           gb|AAN66174.1|AE016245_3
                           (AE016776) UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase [Pseudomonas putida KT2440]
                           595
                           27.39
                           33.10
                           284
                           488.0
     

     
     
200076
                           emb|CAD16489.1|
                           (AL646071) PROBABLE UDP-N-ACETYLMURAMATE:L-ALANYL-GAMMA-D-GLUTAMYL-MESO- DIAMINOPIMELATE LIGASE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           518
                           27.22
                           36.29
                           118
                           294.0
     

     
     
200100
                           gb|AAM42560.1|
                           (AE012446) UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           547
                           25.59
                           32.54
                           185
                           267.0
     

     






      

          
GC ORFID: 49553How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3927550Stop: 3926177

          
Length: 1374


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4020 translation of PA4020Homolog Bit Score 250.0

          
Other Homologs:  t_PA4020 translation of PA4020 (BLASTP 250), psyr_15may02_Scaffold2_revised_gene3473 related to: gi|15599215|ref|NP_252709.1| (NC_002516) UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase [Pseudomonas aeruginosa] pir||A83145 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase PA4020 [imp-TRUNCATED- (BLASTP 195)

          
GC ORF Sequence

           
TTGATCTGCAGGAGTCTGCATGCACATCCACGTACTCGGCATCTGCGGGACCTTCATGGGCTCGCTGGCCGT 
GCTGGCCAAGGAACTGGGCCACCGGGTGACCGGTTCCGACGCCAACGTCTACCCCCCCATGAGCACCCAGCT 
GCAAGCCCAGGGCATCGAGCTGATGCAGGGCTACGATCCGGCCCACCTGGAGCCGGCGCCGGACCTGGTAGT 
GATCGGCAACGCCCTGTCGCGCGGCAATCCGGCGGTGGAGCATGTCCTGAACAAGGGCCTGCCCTACGTTTC 
CGGCCCGCAGTGGCTGGCCGACCACGTGCTGCAAGGACGCTGGGTGCTGGCGGTGGCCGGTACCCACGGCAA 
GACCACCACCACCAGCATGCTCGCCTGGGTCCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATCGGCGG 
GGTGCCGCAGAACTTCGGGGTTTCGGCGCGCCTGGGCGGTACGCCGTTCTTCGTGGTCGAGGCCGACGAGTA 
CGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCATTACCGCCCGCGCACGGCGATCCTGAACAACCT 
GGAATTCGACCACGCGGATATCTTCCCCGACCTCGCGGCCATCGAGCGGCAGTTCCACCATCTGGTGCGCAC 
CGTGCCGGGCGAGGGCCTGATCATTCGCCCGAGCGCCGAGAAAGCCCTGGAGCGCGTACTCGGGATGGGCTG 
CTGGACCCCGGTGCAGACCACCGGCGAAGGCGGCCAGTGGCAGGCGCGCCTGCTCGCCGAGGACGGCTCGCG 
CTTCGAGGTGCTGTTCGACGGCATCGTCCAGGGCGAGGTGGACTGGCCGCTGACCGGCCTGCACAACGTCGC 
CAACGCCCTCGCCAGCCTGGCGGCGGCGCGCCATGTCGGCGTGGTGCCCAGCCAGGGCGCGGCGGCACTCAG 
CGAGTTCCGCAACGTCAAGCGGCGCATGGAGAAGGTCGCGGAGGTCCGGGGCGTGACCCTCtacacGACTTC 
GCCCACCATCCGACCGCCATCGCCACCACCCTCGACGGCCTGCGCAAGCAGGTTGGCGCCGATACCCAGGTG 
ATCGCCATCGTCGAGCCGCGTTCCAACTCGATGAAGCTCGGCGCTCATCGCGACGGCCTGCCGGACAGCGTG 
CGCCAGGCCGACCAGGTGCTCTGGTACGCGCCGCCGAACCTGGGCTGGGACCTGGCCGCCACCGCCGCGCAA 
TGCGCGATACCGTCGCAGGTCTGCGATACCCTGGAGGCGATCATCGAGCAGGTGCGCCAGCAGGCCAGGCCC 
GGCGCGCAAGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCTTGCACGGCAAGCTGGCCGCGGCGCTGGCC 
GAGTGA