ViewGene
Locus Name:
GeneID:
Location:

GeneID:6550
TrivialName: PA14_11850
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11850
PAO1 Ortholog Locus:
Sequence Length:1062
Protein Length:353
Start: 1026406
Stop: 1027468
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
GeneID6550 (PA14_11850) and GeneID6551 (PA14_11840) replaced by GeneID7419 (PA14_11845). Homology: gb|AAG07407.1|AE004818_13 (AE004818) UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase [Pseudomonas aeruginosa PAO1]
Identities = 326/327 (99%), Positives = 327/327 (100%)
Sequence:
ATGCACATCCACGTACTCGGCATCTGCGGGACCTTCATGGGCTCGCTGGCCGTGCTGGCCAAGGAACTGGGC
CACCGGGTGACCGGTTCCGACGCCAACGTCTACCCCCCCATGAGCACCCAGCTGCAAGCCCAGGGCATCGAG
CTGATGCAGGGCTACGATCCGGCCCACCTGGAGCCGGCGCCGGACCTGGTAGTGATCGGCAACGCCCTGTCG
CGCGGCAATCCGGCGGTGGAGCATGTCCTGAACAAGGGCCTGCCCTACGTTTCCGGCCCGCAGTGGCTGGCC
GACCACGTGCTGCAAGGACGCTGGGTGCTGGCGGTGGCCGGTACCCACGGCAAGACCACCACCACCAGCATG
CTCGCCTGGGTCCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATCGGCGGGGTGCCGCAGAACTTCGGG
GTTTCGGCGCGCCTGGGCGGTACGCCGTTCTTCGTGGTCGAGGCCGACGAGTACGACAGCGCCTTCTTCGAC
AAGCGCTCGAAGTTCGTCCATTACCGCCCGCGCACGGCGATCCTGAACAACCTGGAATTCGACCACGCGGAT
ATCTTCCCCGACCTCGCGGCCATCGAGCGGCAGTTCCACCATCTGGTGCGCACCGTGCCGGGCGAGGGCCTG
ATCATTCGCCCGAGCGCCGAGAAAGCCCTGGAGCGCGTACTCGGGATGGGCTGCTGGACCCCGGTGCAGACC
ACCGGCGAAGGCGGCCAGTGGCAGGCGCGCCTGCTCGCCGAGGACGGCTCGCGCTTCGAGGTGCTGTTCGAC
GGCATCGTCCAGGGCGAGGTGGACTGGCCGCTGACCGGCCTGCACAACGTCGCCAACGCCCTCGCCAGCCTG
GCGGCGGCGCGCCATGTCGGCGTGGTGCCCAGCCAGGGCGCGGCGGCACTCAGCGAGTTCCGCAACGTCAAG
CGGCGCATGGAGAAGGTCGCGGAGGTCCGGGGCGTGACCCTCtacacGACTTCGCCCACCATCCGACCGCCA
TCGCCACCACCCTCGACGGCCTGCGCAAGCAGGTTGGCGCCGATACCCAGGTGA
Translation:
MHIHVLGICGTFMGSLAVLAKELGHRVTGSDANVYPPMSTQLQAQGIELMQGYDPAHLEPAPDLVVIGNALS
RGNPAVEHVLNKGLPYVSGPQWLADHVLQGRWVLAVAGTHGKTTTTSMLAWVLEHAGMSPGFLIGGVPQNFG
VSARLGGTPFFVVEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIERQFHHLVRTVPGEGL
IIRPSAEKALERVLGMGCWTPVQTTGEGGQWQARLLAEDGSRFEVLFDGIVQGEVDWPLTGLHNVANALASL
AAARHVGVVPSQGAAALSEFRNVKRRMEKVAEVRGVTLYTTSPTIRPPSPPPSTACASRLAPIPR*
AnnotationID:6551GeneID:6550
AnnotatorUID: danlee
Modification Date/Time: 2006-03-11 17:05:16
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:
GeneID6550 (PA14_11850) and GeneID6551 (PA14_11840) replaced by GeneID7419 (PA14_11845).


















    ReferenceID:12887




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30200




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6550
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
8002
                           PA4020_tr
                           translation of PA4020
                           458
                           72.27
                           73.14
                           112
                           1703.0
     

     
     
200031
                           gb|AAG07407.1|AE004818_13
                           (AE004818) UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase [Pseudomonas aeruginosa PAO1]
                           458
                           72.27
                           73.14
                           112
                           1703.0
     

     
     
200032
                           gb|AAN66174.1|AE016245_3
                           (AE016776) UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase [Pseudomonas putida KT2440]
                           456
                           65.13
                           69.95
                           110
                           1537.0
     

     
     
200033
                           gb|AAO54271.1|
                           (AE016858) UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase [Pseudomonas syringae pv. tomato str. DC3000]
                           456
                           64.47
                           69.29
                           110
                           1521.0
     

     
     
200035
                           dbj|BAC58577.1|
                           (AP005074) UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m eso-diaminopimelate ligase [Vibrio parahaemolyticus]
                           454
                           50.44
                           58.81
                           103
                           1181.0
     

     






      

          
GC ORFID: 49552How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3927531Stop: 3926470

          
Length: 1062


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4020 translation of PA4020Homolog Bit Score 663.0

          
Other Homologs:  t_PA4020 translation of PA4020 (BLASTP 663), psyr_15may02_Scaffold2_revised_gene3473 related to: gi|15599215|ref|NP_252709.1| (NC_002516) UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase [Pseudomonas aeruginosa] pir||A83145 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase PA4020 [imp-TRUNCATED- (BLASTP 586)

          
GC ORF Sequence

           
ATGCACATCCACGTACTCGGCATCTGCGGGACCTTCATGGGCTCGCTGGCCGTGCTGGCCAAGGAACTGGGC 
CACCGGGTGACCGGTTCCGACGCCAACGTCTACCCCCCCATGAGCACCCAGCTGCAAGCCCAGGGCATCGAG 
CTGATGCAGGGCTACGATCCGGCCCACCTGGAGCCGGCGCCGGACCTGGTAGTGATCGGCAACGCCCTGTCG 
CGCGGCAATCCGGCGGTGGAGCATGTCCTGAACAAGGGCCTGCCCTACGTTTCCGGCCCGCAGTGGCTGGCC 
GACCACGTGCTGCAAGGACGCTGGGTGCTGGCGGTGGCCGGTACCCACGGCAAGACCACCACCACCAGCATG 
CTCGCCTGGGTCCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATCGGCGGGGTGCCGCAGAACTTCGGG 
GTTTCGGCGCGCCTGGGCGGTACGCCGTTCTTCGTGGTCGAGGCCGACGAGTACGACAGCGCCTTCTTCGAC 
AAGCGCTCGAAGTTCGTCCATTACCGCCCGCGCACGGCGATCCTGAACAACCTGGAATTCGACCACGCGGAT 
ATCTTCCCCGACCTCGCGGCCATCGAGCGGCAGTTCCACCATCTGGTGCGCACCGTGCCGGGCGAGGGCCTG 
ATCATTCGCCCGAGCGCCGAGAAAGCCCTGGAGCGCGTACTCGGGATGGGCTGCTGGACCCCGGTGCAGACC 
ACCGGCGAAGGCGGCCAGTGGCAGGCGCGCCTGCTCGCCGAGGACGGCTCGCGCTTCGAGGTGCTGTTCGAC 
GGCATCGTCCAGGGCGAGGTGGACTGGCCGCTGACCGGCCTGCACAACGTCGCCAACGCCCTCGCCAGCCTG 
GCGGCGGCGCGCCATGTCGGCGTGGTGCCCAGCCAGGGCGCGGCGGCACTCAGCGAGTTCCGCAACGTCAAG 
CGGCGCATGGAGAAGGTCGCGGAGGTCCGGGGCGTGACCCTCtacacGACTTCGCCCACCATCCGACCGCCA 
TCGCCACCACCCTCGACGGCCTGCGCAAGCAGGTTGGCGCCGATACCCAGGTGA