ViewGene

Locus Name:
GeneID:
Location:

GeneID:6546
TrivialName: PA14_12040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12040
PAO1 Ortholog Locus:
Sequence Length:2664
Protein Length:887
Start: 1042923
Stop: 1040260
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
ATGTGCAGGCGCTGCAACAGGCTGGCGCGCCGGCGCATCACGTCTTCGTTGGACAGGGTGCGGTCGAAGTTA
CTGTTCAAGGGCGGGCGCCTCCGGCTCGGCTGCCGTGGGTTCGGGCTTGGCCACCGCCGCCGCGAGCGGCGC
GACGGGTTCCGCGTATTCGGCCTTGAGCTTGCCGTGCTCGTCGAGCAGCCAGGCGTCCATCACCTGCTTGAC
CACCGGGGCGGCGACGCCGGAGCCGGACTCGCCGTTCTCCACCATCACCGCCACCGCGATCTGCGGGTTGTT
GGCCGGCGCGAAGCCGACGAACAGGGCGTGGTCGCGGTGCCGCTCGAGCAGCTTGGAGCGGTCGTAGCGCTC
GTTCTGCTTGATCGCCACCACCTGGGCGGTACCGCTCTTGCCGGCGATCAGGTAGGCCGAGGTGGCGCCGAC
CTTGCGCGCCGTGCCACGGGCGCCATGCACCACCTGCTGCATGCCGTAGTCGACGCGGTCCCAGTTGGCCGG
GTCGCGCAGCACGATGTCGGGCATCGGGTCGGGGTCGACCGGCGGCTGGCCGTCGATGGTCTTGGCCAGGTG
CGGGCGGATCCAGTGGCCCTTGTTGGCCAGCAGCGCGGTCATCTGCGCCAACTGGATCGGCGTCGCCTGCAT
GTAGCCCTGGCCGATGCCGAGGATCAGGGTCTCCCCCGGGTACCAGACCTGGCGGCGGGTCTTGCGCTTCCA
TTCGCGCGAGGGCATCAGCCCGTCGGCTTCGCCGAACATGTCCAGGGCGACTTTCTGGCCGAAACCGAAGCG
ACTCATGAAGGCGTGCAGGCGGTCGATCCCCAGCTTGTGCGCGAGGTCGTAGAAATAGGTGTCGTTGGACCG
GTAGATCGCCGACTCCAGGCTCACCCAGCCATCGCCGTAGCGGTTCCAGTTACGGTACTTGTGGTCGTAGTT
GGGCAACTGGTAGTAGCCGGGGTCGAAGACCCGCGAGGTCGGCGTGACCACCCCGGCGTCGAGGCCGGCCAG
CGCCACCGCCGGTTTCACCGTCGAGCCCGGCGGATAGAGCCCGCGCAGGACGCGGTTGTACAGCGGCCGGTC
GATGGAGTCGCGCAGCTCGGCATAGGCCTTGAAGCTGATGCCGGTGACGAACAGGTTGGGGTCGTAGCTCGG
CTGGCTGACCATCGCCAGCACGTCGCCGGTGGACGGCTGGATCGCCACGATGGCGCCCCGCCGCCCGGCCAG
GGCGTTCTCGGCGGCCTCCTGCAGGCGGCTATCGATGCTCAGGACGATGTCCTTGCCGGGAATCGGGTCGGT
GCGCTTGAGCACCCGCAGCACCCGCCCGCGGGCGTTGGTCTCGACTTCCTCGTAGCCAACGGTGCCGTGCAG
CTCGCTCTCGTAGAAGCGCTCGATGCCGGTCTTGCCGATATGGTGGGTGCCGCTGTAGTTGATCGGGTCGAG
GTTCTTCAGTTCCTGCTCGTTGATCCGCCCGACGTACCCGACCGAATGGGCGAAGTGCTCCTTCAGCGGGTA
GTGGCGGACGAACTGGGTCGCCACGTCGACGCCCGGCAGGCGGAACTGGTTCACCGCGATGCGGGCGATCTG
TTCCTCGTTGAGTTCGAACATGATGGGAACCGGCTCGAACGGACGCCGCCCCTGCTTCATGCGCTTCTCGAA
GATGGCCCGGTCGTCCTCGGTCAGGCCGAGGATCTCCACCAGCGTGTCGAGGGTCTTCTGCAGGTCCTCGGT
GCGTTCGCGGGTGATGGTCAGGCTGAAGCTCGGCCGGTTGTCGGCGATGATCACGCCGTTGCGGTCGAAGAT
GATCCCGCGGGTCGGCGGGATCGGCTGCACATGGACCCGGTTGTTCTCCGACAGCGTCGAATGGTACTCGTA
CTGGGTCACCTGCAGGTGGTACATGCGCGCCACCAGCACCAGGGTCAGCAAGACCACCGCCACCGCCCCGAC
GATGACGCGCCGACGCACCAGGCGGGCGTCTTTCTCGTGGTCTTTCAGGTGGATCGGCTGCGGCATCGGGAC
TGGGGACTATTTGTGGTAGGGGTGCCCGGACAATACGGTCCAGGCCCGGTAGATCTGCTCGCCGACCAGGAT
CCGCACCAACGGGTGCGGCAGCGTCAACGGCGACAGCGACCAGCGCTGCTCGCTGCGCGCGCAGACCTCCGG
CGCCAGCCCTTCCGGGCCGCCGACCATGAGATTCACGGTGCGTGCGTCGAGACGCCAGCGATCCAGTTCGCG
AGCCAGTTGCTCGGTGCTCCAGAGCCGACCTTCGACCTCCAGGGTCACCACCCGTTCCCCCGGCTGCACGCG
CGCCAGCATGGCCTCGCCTTCCTGACGGATCAGGCGCGCCACGTCGGCGTTCTTGCCGCGGGTGTTGAGCGG
GATCTCCACCAGTTCGAGGGACAGCTCGGCCGGCAGGCGCTTGACGTATTCCTGCCAGCCTTCCTCGACCCA
GCGAGGCATGCGCGAGCCAACCGCGATCAGGCGCAACCGCATGCCGGCGTCACTCTTCCGGCTGGTGCTGGG
CGCGGCTCTGCTCGGCGCCCTGCCACAGGCGCTCCAGGTCGTAGAACTGGCGGGTCGCCGGGAGCATCACGT
GGACCACCACGTCGCCCAGGTCGAGCAGCGCCCATTCGCCGGACTCCAGGCCTTCGCTGCCCAGGGGCTTGA
Translation:
MCRRCNRLARRRITSSLDRVRSKLLFKGGRLRLGCRGFGLGHRRRERRDGFRVFGLELAVLVEQPGVHHLLD
HRGGDAGAGLAVLHHHRHRDLRVVGRREADEQGVVAVPLEQLGAVVALVLLDRHHLGGTALAGDQVGRGGAD
LARRATGAMHHLLHAVVDAVPVGRVAQHDVGHRVGVDRRLAVDGLGQVRADPVALVGQQRGHLRQLDRRRLH
VALADAEDQGLPRVPDLAAGLALPFARGHQPVGFAEHVQGDFLAETEATHEGVQAVDPQLVREVVEIGVVGP
VDRRLQAHPAIAVAVPVTVLVVVVGQLVVAGVEDPRGRRDHPGVEAGQRHRRFHRRARRIEPAQDAVVQRPV
DGVAQLGIGLEADAGDEQVGVVARLADHRQHVAGGRLDRHDGAPPPGQGVLGGLLQAAIDAQDDVLAGNRVG
ALEHPQHPPAGVGLDFLVANGAVQLALVEALDAGLADMVGAAVVDRVEVLQFLLVDPPDVPDRMGEVLLQRV
VADELGRHVDARQAELVHRDAGDLFLVEFEHDGNRLERTPPLLHALLEDGPVVLGQAEDLHQRVEGLLQVLG
AFAGDGQAEARPVVGDDHAVAVEDDPAGRRDRLHMDPVVLRQRRMVLVLGHLQVVHARHQHQGQQDHRHRPD
DDAPTHQAGVFLVVFQVDRLRHRDWGLFVVGVPGQYGPGPVDLLADQDPHQRVRQRQRRQRPALLAARADLR
RQPFRAADHEIHGACVETPAIQFASQLLGAPEPTFDLQGHHPFPRLHARQHGLAFLTDQARHVGVLAAGVER
DLHQFEGQLGRQALDVFLPAFLDPARHARANRDQAQPHAGVTLPAGAGRGSARRPATGAPGRRTGGSPGASR
GPPRRPGRAAPIRRTPGLRCPGA*
AnnotationID:6547GeneID:6546
AnnotatorUID: urbach
Modification Date/Time: 2004-09-13 17:05:44
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:12879
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:30192
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49548How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 3911015Stop: 3913678
Length: 2664
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGTGCAGGCGCTGCAACAGGCTGGCGCGCCGGCGCATCACGTCTTCGTTGGACAGGGTGCGGTCGAAGTTA
CTGTTCAAGGGCGGGCGCCTCCGGCTCGGCTGCCGTGGGTTCGGGCTTGGCCACCGCCGCCGCGAGCGGCGC
GACGGGTTCCGCGTATTCGGCCTTGAGCTTGCCGTGCTCGTCGAGCAGCCAGGCGTCCATCACCTGCTTGAC
CACCGGGGCGGCGACGCCGGAGCCGGACTCGCCGTTCTCCACCATCACCGCCACCGCGATCTGCGGGTTGTT
GGCCGGCGCGAAGCCGACGAACAGGGCGTGGTCGCGGTGCCGCTCGAGCAGCTTGGAGCGGTCGTAGCGCTC
GTTCTGCTTGATCGCCACCACCTGGGCGGTACCGCTCTTGCCGGCGATCAGGTAGGCCGAGGTGGCGCCGAC
CTTGCGCGCCGTGCCACGGGCGCCATGCACCACCTGCTGCATGCCGTAGTCGACGCGGTCCCAGTTGGCCGG
GTCGCGCAGCACGATGTCGGGCATCGGGTCGGGGTCGACCGGCGGCTGGCCGTCGATGGTCTTGGCCAGGTG
CGGGCGGATCCAGTGGCCCTTGTTGGCCAGCAGCGCGGTCATCTGCGCCAACTGGATCGGCGTCGCCTGCAT
GTAGCCCTGGCCGATGCCGAGGATCAGGGTCTCCCCCGGGTACCAGACCTGGCGGCGGGTCTTGCGCTTCCA
TTCGCGCGAGGGCATCAGCCCGTCGGCTTCGCCGAACATGTCCAGGGCGACTTTCTGGCCGAAACCGAAGCG
ACTCATGAAGGCGTGCAGGCGGTCGATCCCCAGCTTGTGCGCGAGGTCGTAGAAATAGGTGTCGTTGGACCG
GTAGATCGCCGACTCCAGGCTCACCCAGCCATCGCCGTAGCGGTTCCAGTTACGGTACTTGTGGTCGTAGTT
GGGCAACTGGTAGTAGCCGGGGTCGAAGACCCGCGAGGTCGGCGTGACCACCCCGGCGTCGAGGCCGGCCAG
CGCCACCGCCGGTTTCACCGTCGAGCCCGGCGGATAGAGCCCGCGCAGGACGCGGTTGTACAGCGGCCGGTC
GATGGAGTCGCGCAGCTCGGCATAGGCCTTGAAGCTGATGCCGGTGACGAACAGGTTGGGGTCGTAGCTCGG
CTGGCTGACCATCGCCAGCACGTCGCCGGTGGACGGCTGGATCGCCACGATGGCGCCCCGCCGCCCGGCCAG
GGCGTTCTCGGCGGCCTCCTGCAGGCGGCTATCGATGCTCAGGACGATGTCCTTGCCGGGAATCGGGTCGGT
GCGCTTGAGCACCCGCAGCACCCGCCCGCGGGCGTTGGTCTCGACTTCCTCGTAGCCAACGGTGCCGTGCAG
CTCGCTCTCGTAGAAGCGCTCGATGCCGGTCTTGCCGATATGGTGGGTGCCGCTGTAGTTGATCGGGTCGAG
GTTCTTCAGTTCCTGCTCGTTGATCCGCCCGACGTACCCGACCGAATGGGCGAAGTGCTCCTTCAGCGGGTA
GTGGCGGACGAACTGGGTCGCCACGTCGACGCCCGGCAGGCGGAACTGGTTCACCGCGATGCGGGCGATCTG
TTCCTCGTTGAGTTCGAACATGATGGGAACCGGCTCGAACGGACGCCGCCCCTGCTTCATGCGCTTCTCGAA
GATGGCCCGGTCGTCCTCGGTCAGGCCGAGGATCTCCACCAGCGTGTCGAGGGTCTTCTGCAGGTCCTCGGT
GCGTTCGCGGGTGATGGTCAGGCTGAAGCTCGGCCGGTTGTCGGCGATGATCACGCCGTTGCGGTCGAAGAT
GATCCCGCGGGTCGGCGGGATCGGCTGCACATGGACCCGGTTGTTCTCCGACAGCGTCGAATGGTACTCGTA
CTGGGTCACCTGCAGGTGGTACATGCGCGCCACCAGCACCAGGGTCAGCAAGACCACCGCCACCGCCCCGAC
GATGACGCGCCGACGCACCAGGCGGGCGTCTTTCTCGTGGTCTTTCAGGTGGATCGGCTGCGGCATCGGGAC
TGGGGACTATTTGTGGTAGGGGTGCCCGGACAATACGGTCCAGGCCCGGTAGATCTGCTCGCCGACCAGGAT
CCGCACCAACGGGTGCGGCAGCGTCAACGGCGACAGCGACCAGCGCTGCTCGCTGCGCGCGCAGACCTCCGG
CGCCAGCCCTTCCGGGCCGCCGACCATGAGATTCACGGTGCGTGCGTCGAGACGCCAGCGATCCAGTTCGCG
AGCCAGTTGCTCGGTGCTCCAGAGCCGACCTTCGACCTCCAGGGTCACCACCCGTTCCCCCGGCTGCACGCG
CGCCAGCATGGCCTCGCCTTCCTGACGGATCAGGCGCGCCACGTCGGCGTTCTTGCCGCGGGTGTTGAGCGG
GATCTCCACCAGTTCGAGGGACAGCTCGGCCGGCAGGCGCTTGACGTATTCCTGCCAGCCTTCCTCGACCCA
GCGAGGCATGCGCGAGCCAACCGCGATCAGGCGCAACCGCATGCCGGCGTCACTCTTCCGGCTGGTGCTGGG
CGCGGCTCTGCTCGGCGCCCTGCCACAGGCGCTCCAGGTCGTAGAACTGGCGGGTCGCCGGGAGCATCACGT
GGACCACCACGTCGCCCAGGTCGAGCAGCGCCCATTCGCCGGACTCCAGGCCTTCGCTGCCCAGGGGCTTGA