ViewGene
Locus Name:
GeneID:
Location:

GeneID:6541
TrivialName: PA14_12320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12320
PAO1 Ortholog Locus:
Sequence Length:1164
Protein Length:387
Start: 1062438
Stop: 1063601
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
ATGGTCAGCTCCGACTCCGGACGCTGGCGCAGGGCCAGTTCGCACCAGGCGCGGAACTGTGCTTCGGAGGGC
AGGTCCGGGGCGGCGCTGGCGACCTGCAGGTCGAGCTCAAGCGGCATCGTGACCGCCCTTGCCCGTTCCCTC
GACCGGCCGCACCTGGCCTTGCTGGCGGTTCTCATGGCGCTCGTAGGCTTCGACGATACGCTGCACCAGCGG
GTGGCGGACCACATCCTTGGGCTTGAAATGGGTGAAGCTGATGCCGGGGACGTCCTGCAGGACCTCGATCAC
GTGCTTGAGGCCGGAGCGGGTGCCGCGGGGCAGGTCGACCTGGGTGACGTCGCCGGTGATCACCGCGGTGGA
GCCGAAGCCGATCCGGGTGAGGAACATCTTCATCTGCTCGACGGTGGTGTTCTGGCTCTCGTCGAGGATGAT
GAAGCTGTTGTTCAGCGTGCGCCCGCGCATGTAGGCCAGCGGCGCGACCTCGATGACGTTGCGCTCGATCAG
CTTGGCCACGTGTTCGAAGCCGAGCATCTCGTAGAGCGCGTCGTAGAGCGGGCGCAGGTAGGGGTCGATCTT
CTGCGACAGGTCGCCGGGAAGGAAACCGAGCTTCTCGCCGGCCTCGACCGCCGGGCGCACCAGCAGGATGCG
GCGGATCTGCTCGCGCTCCAGGGCGTCGACGGCGCAGGCCACGGCGAGGTAGGTCTTGCCGGTGCCAGCCGG
ACCGATGCCGAAGTTGATGTCGTGGTCGAGGATCGCCTTGACGTAGCGCTGCTGGTTGGCGCCGCGCGGGCG
GATGTGCGCCTTGCGCGACTTCAGGGTGACCTGCGGCGCGCTCTGCAATTCCTCGAGGTCTTCCAGGCCGGA
CTCCTGCAGGTACAGGTGCACGGTGTCGGGGGTGAGATCGGTGCCGTTCTGCGCCTCGCGGTAGAGACGCTG
CAGCAGGCGTTCGGCGACCTTGGTCCGGCGCGGTTCGCCGGCCAGTTCGAACTGGTTGCCGCGGTTGCGGAT
CTCGATGTCGAGGCGTTTCTCGATCTGGTGGAGATGCTCGTCGAACTGCCCGCAAAGTGTCGCGAAGCTGCG
GGCGTCGAACGGCTCGAGGATAAAGCGATGAAGTTCCTGGGGGGCGTTCAAGGTGTTCTGTCGTACTCGCCA
GTGGCTGATTGA
Translation:
MVSSDSGRWRRASSHQARNCASEGRSGAALATCRSSSSGIVTALARSLDRPHLALLAVLMALVGFDDTLHQR
VADHILGLEMGEADAGDVLQDLDHVLEAGAGAAGQVDLGDVAGDHRGGAEADPGEEHLHLLDGGVLALVEDD
EAVVQRAPAHVGQRRDLDDVALDQLGHVFEAEHLVERVVERAQVGVDLLRQVAGKETELLAGLDRRAHQQDA
ADLLALQGVDGAGHGEVGLAGASRTDAEVDVVVEDRLDVALLVGAARADVRLARLQGDLRRALQFLEVFQAG
LLQVQVHGVGGEIGAVLRLAVETLQQAFGDLGPARFAGQFELVAAVADLDVEAFLDLVEMLVELPAKCREAA
GVERLEDKAMKFLGGVQGVLSYSPVAD*
AnnotationID:6542GeneID:6541
AnnotatorUID: urbach
Modification Date/Time: 2004-08-30 16:04:04
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:12870




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30182




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49543How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3891500Stop: 3890337

          
Length: 1164


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGTCAGCTCCGACTCCGGACGCTGGCGCAGGGCCAGTTCGCACCAGGCGCGGAACTGTGCTTCGGAGGGC 
AGGTCCGGGGCGGCGCTGGCGACCTGCAGGTCGAGCTCAAGCGGCATCGTGACCGCCCTTGCCCGTTCCCTC 
GACCGGCCGCACCTGGCCTTGCTGGCGGTTCTCATGGCGCTCGTAGGCTTCGACGATACGCTGCACCAGCGG 
GTGGCGGACCACATCCTTGGGCTTGAAATGGGTGAAGCTGATGCCGGGGACGTCCTGCAGGACCTCGATCAC 
GTGCTTGAGGCCGGAGCGGGTGCCGCGGGGCAGGTCGACCTGGGTGACGTCGCCGGTGATCACCGCGGTGGA 
GCCGAAGCCGATCCGGGTGAGGAACATCTTCATCTGCTCGACGGTGGTGTTCTGGCTCTCGTCGAGGATGAT 
GAAGCTGTTGTTCAGCGTGCGCCCGCGCATGTAGGCCAGCGGCGCGACCTCGATGACGTTGCGCTCGATCAG 
CTTGGCCACGTGTTCGAAGCCGAGCATCTCGTAGAGCGCGTCGTAGAGCGGGCGCAGGTAGGGGTCGATCTT 
CTGCGACAGGTCGCCGGGAAGGAAACCGAGCTTCTCGCCGGCCTCGACCGCCGGGCGCACCAGCAGGATGCG 
GCGGATCTGCTCGCGCTCCAGGGCGTCGACGGCGCAGGCCACGGCGAGGTAGGTCTTGCCGGTGCCAGCCGG 
ACCGATGCCGAAGTTGATGTCGTGGTCGAGGATCGCCTTGACGTAGCGCTGCTGGTTGGCGCCGCGCGGGCG 
GATGTGCGCCTTGCGCGACTTCAGGGTGACCTGCGGCGCGCTCTGCAATTCCTCGAGGTCTTCCAGGCCGGA 
CTCCTGCAGGTACAGGTGCACGGTGTCGGGGGTGAGATCGGTGCCGTTCTGCGCCTCGCGGTAGAGACGCTG 
CAGCAGGCGTTCGGCGACCTTGGTCCGGCGCGGTTCGCCGGCCAGTTCGAACTGGTTGCCGCGGTTGCGGAT 
CTCGATGTCGAGGCGTTTCTCGATCTGGTGGAGATGCTCGTCGAACTGCCCGCAAAGTGTCGCGAAGCTGCG 
GGCGTCGAACGGCTCGAGGATAAAGCGATGAAGTTCCTGGGGGGCGTTCAAGGTGTTCTGTCGTACTCGCCA 
GTGGCTGATTGA