ViewGene

Locus Name:
GeneID:
Location:

GeneID:6532
TrivialName: PA14_12520
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12520
PAO1 Ortholog Locus:
Sequence Length:1524
Protein Length:507
Start: 1076388
Stop: 1077911
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAE07113.1| (BX569690) possible N-terminal part of IF-2 [Synechococcus sp. WH 8102]
Identities = 52/170 (30%), Positives = 65/170 (38%), Gaps = 41/170 (24%)
Sequence:
GTGGTTCTCGGTCGGTCGGGCGGTCGACGCCCTCGGCGGCGAGCGGGTCGACGGCTGGATCCTGGAAGAATG
GCGCGGCCTGGCCCTGCGCGCGCGTTTCAGCGCTTGCTGGCGCGATCCGCGCGGCAACCTCTGGAATGTCCT
GCCGCAGGCGGGCGCCATCGCTTTCCTGGCCGACCCGCAGCGGCGCTACGAAGGCGTGCCGCTGGCCGACCA
GTACCAGGCGCTCAGCCGCGATGTCCTGCTGGAAGACTACCTCGGCCTGCGGCGCCAACTGGCCCGCGCCGG
CCTGGACGACGAGGCCCGCGAGCGCCTGGCCGGGATGGCCGCGCGCCTGGAAAGCTGGCTGGCCCTGGGCGG
CCGTGGCGACCAGGCTTGTCCGTGCGGCAGCGGCAAGCGCTACCGCAACTGCTGCTCCCGCCTGGTGGCCTC
GGCCTCCTGAGCGACGTTGCGCGGTGCGACGCGCCACTGCTCGCCGGGTTTCGGCGTGCCGAAGGTCGCCGG
GTCCACGCCTTGGCTGCGCAGCGCCGCCTGGAGTGCCTTGGGCGGGTCGTCCTGCTGTTCGTCGGTGAGATT
GAAGGTACCGAAGTGGATGGCCATGCTGGTCTGCGCCTGCAGCGTGCGATGGGCCTGCACCGCGTCGTCGGG
ATTCATGTGGTGGTCGCGCATGAACCAGCGCGGCTCGTAGGCGCCGATCGGCAGGGCGGCGAAACGCATCGC
CCCGAAGCGCTGGTGGATCAGCCCGAACTCCGGGCCGAGCCCGGTATCGCCGGGAAACAGCAGCGGGCCGTC
CGGCGAGTCGATGACGAAGCCGAGCCAGAGCGTGCGGTTGGTGTCGCTGCGGGTGCGCGACGACCAGTGCTG
CACCGGTACGCCATGCAGCGTCAGGCCAGCGCCCAGCGGCACGGCCTGCCACCAGTCGATCTCCACGACGTC
GGCGAAACCTGTCTGGCGGATCAGCCCGGCGTTGCCCAGGCCGCTGACTACCTTGGCCGTCGGCCAGCGCCG
GTGGAGCTGGCGCAGGGTTTCCAGGTCGAGGTGGTCGTAGTGGTTGTGGCTCACCAGCACCAGGTCGATCGG
CGGCAACTGGTCGAGCGTCAACCCGGGCGGATGGTGGCGCTTCGGGCCGATGAAGGCGAGCGGGCTGACCCG
TTGCGACCAGACCGGGTCGGTGAGGATGTTCAGGCCGCGGTGCTGGATCAGCAGGGTGGCGTGGTTGATGTA
GGTGACCCGCAGTTCTTCGCCGCGGGCGCGCTCGTTCACCCTTGGCGGCGTTGCCGTCGGCGGCAGGGCGAC
CCACGGGCGTTGCGGCGGGCGGTTCCACTGCCACTTGAGCAGGTCGCGCAGGCTCTTGTGCGCGGTCGGCTG
GATATTGCGGAAACGTTCGCCGTCGAAATGGTCCGAAGGCGGACCCTGATAGGCGCTGCCAGCGCAGCCGGC
CAGGGTCAGCAGGCTGATCAGCCAGGTGGGACGCAGGGAGGGCATGAGGGGATGCTCTTGCGGTCAGGCTCT
CGGACAACCTAG
Translation:
MVLGRSGGRRPRRRAGRRLDPGRMARPGPARAFQRLLARSARQPLECPAAGGRHRFPGRPAAALRRRAAGRP
VPGAQPRCPAGRLPRPAAPTGPRRPGRRGPRAPGRDGRAPGKLAGPGRPWRPGLSVRQRQALPQLLLPPGGL
GLLSDVARCDAPLLAGFRRAEGRRVHALAAQRRLECLGRVVLLFVGEIEGTEVDGHAGLRLQRAMGLHRVVG
IHVVVAHEPARLVGADRQGGETHRPEALVDQPELRAEPGIAGKQQRAVRRVDDEAEPERAVGVAAGARRPVL
HRYAMQRQASAQRHGLPPVDLHDVGETCLADQPGVAQAADYLGRRPAPVELAQGFQVEVVVVVVAHQHQVDR
RQLVERQPGRMVALRADEGERADPLRPDRVGEDVQAAVLDQQGGVVDVGDPQFFAAGALVHPWRRCRRRQGD
PRALRRAVPLPLEQVAQALVRGRLDIAETFAVEMVRRRTLIGAASAAGQGQQADQPGGTQGGHEGMLLRSGS
RTT*
AnnotationID:6533GeneID:6532
AnnotatorUID: danlee
Modification Date/Time: 2006-03-20 14:02:46
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
Opposite GID1654 (PA14_12530).
ReferenceID:16289
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:30164
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49534How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 3877550Stop: 3876027
Length: 1524
Start Codon: GTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGGTTCTCGGTCGGTCGGGCGGTCGACGCCCTCGGCGGCGAGCGGGTCGACGGCTGGATCCTGGAAGAATG
GCGCGGCCTGGCCCTGCGCGCGCGTTTCAGCGCTTGCTGGCGCGATCCGCGCGGCAACCTCTGGAATGTCCT
GCCGCAGGCGGGCGCCATCGCTTTCCTGGCCGACCCGCAGCGGCGCTACGAAGGCGTGCCGCTGGCCGACCA
GTACCAGGCGCTCAGCCGCGATGTCCTGCTGGAAGACTACCTCGGCCTGCGGCGCCAACTGGCCCGCGCCGG
CCTGGACGACGAGGCCCGCGAGCGCCTGGCCGGGATGGCCGCGCGCCTGGAAAGCTGGCTGGCCCTGGGCGG
CCGTGGCGACCAGGCTTGTCCGTGCGGCAGCGGCAAGCGCTACCGCAACTGCTGCTCCCGCCTGGTGGCCTC
GGCCTCCTGAGCGACGTTGCGCGGTGCGACGCGCCACTGCTCGCCGGGTTTCGGCGTGCCGAAGGTCGCCGG
GTCCACGCCTTGGCTGCGCAGCGCCGCCTGGAGTGCCTTGGGCGGGTCGTCCTGCTGTTCGTCGGTGAGATT
GAAGGTACCGAAGTGGATGGCCATGCTGGTCTGCGCCTGCAGCGTGCGATGGGCCTGCACCGCGTCGTCGGG
ATTCATGTGGTGGTCGCGCATGAACCAGCGCGGCTCGTAGGCGCCGATCGGCAGGGCGGCGAAACGCATCGC
CCCGAAGCGCTGGTGGATCAGCCCGAACTCCGGGCCGAGCCCGGTATCGCCGGGAAACAGCAGCGGGCCGTC
CGGCGAGTCGATGACGAAGCCGAGCCAGAGCGTGCGGTTGGTGTCGCTGCGGGTGCGCGACGACCAGTGCTG
CACCGGTACGCCATGCAGCGTCAGGCCAGCGCCCAGCGGCACGGCCTGCCACCAGTCGATCTCCACGACGTC
GGCGAAACCTGTCTGGCGGATCAGCCCGGCGTTGCCCAGGCCGCTGACTACCTTGGCCGTCGGCCAGCGCCG
GTGGAGCTGGCGCAGGGTTTCCAGGTCGAGGTGGTCGTAGTGGTTGTGGCTCACCAGCACCAGGTCGATCGG
CGGCAACTGGTCGAGCGTCAACCCGGGCGGATGGTGGCGCTTCGGGCCGATGAAGGCGAGCGGGCTGACCCG
TTGCGACCAGACCGGGTCGGTGAGGATGTTCAGGCCGCGGTGCTGGATCAGCAGGGTGGCGTGGTTGATGTA
GGTGACCCGCAGTTCTTCGCCGCGGGCGCGCTCGTTCACCCTTGGCGGCGTTGCCGTCGGCGGCAGGGCGAC
CCACGGGCGTTGCGGCGGGCGGTTCCACTGCCACTTGAGCAGGTCGCGCAGGCTCTTGTGCGCGGTCGGCTG
GATATTGCGGAAACGTTCGCCGTCGAAATGGTCCGAAGGCGGACCCTGATAGGCGCTGCCAGCGCAGCCGGC
CAGGGTCAGCAGGCTGATCAGCCAGGTGGGACGCAGGGAGGGCATGAGGGGATGCTCTTGCGGTCAGGCTCT
CGGACAACCTAG