ViewGene
Locus Name:
GeneID:
Location:

GeneID:6530
TrivialName: PA14_12600
AnnotatorUID: diggins
Modification Date/Time:2006-04-23 19:07:40
LocusName:PA14_12600
PAO1 Ortholog Locus:
Sequence Length:705
Protein Length:234
Start: 1080454
Stop: 1081158
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN70345.1|AE016676_5 (AE016792) hypothetical protein [Pseudomonas putida KT2440]
Identities = 131/274 (47%), Positives = 160/274 (58%), Gaps = 46/274 (16%)
Sequence:
ATGAACGGTGGATGGTGGCGAATGCTCGGGGTGGGCGCTCTCTCGCTGAGCCTGTGCGTCCAGGCGCAGGCC
GACGACGGCCGAGGGGGACGCGGCGGACCCGGCGGCGAGCGCGGTGTTGCCCACGGACAACCGGGACCTGGC
CGCGGCGAAGCGCATGGCGGCAGTTGGGGACCGCATCCCGACTGGCGTCCGGGCCGGATGGTGGATGCCTTG
CCGCGCGGACACCTGCGGGTGCCCTATCGCGGCGGCGAGTATTTCTTCCACGACGGCTACTGGTACCGACCC
GACGGCCCGCGCTATGTGCTGGTCGTGCCGCCCCGCGGGGTGCGCGTCCGCAGCCTGCCGCCCTATGCGGAG
CAGGTCTGGCTGGGCAGCGTGCTGTACTTCCTTGCCGCCGGCACTTACTACCTGTGGCATGCCGACACCCGC
GAGTACGAAGTGGTCAGCCCGCCGCCGCGGGCAGCGGGACCCGTTTATCCGGTCAGCGGGCCGGCCGCCAGC
TACGACGTGGTGGCCTACCCCGCGCGCGGCCAGGGGCCCGACCAGCAGAGCCGCGACCGCTACGAGTGCCAC
CGCTGGGCGGTGGTCGAGAGCGGCTTCGACCCGGCGGGGGCGACCTACGCGCCGGCCGCCGAGGTCGCCAAC
GGCTACCGCCGGGCCATGGCCGCCTGCCTGAGCGGGCGCGGCTACAGCGTCAACTGA
Translation:
MNGGWWRMLGVGALSLSLCVQAQADDGRGGRGGPGGERGVAHGQPGPGRGEAHGGSWGPHPDWRPGRMVDAL
PRGHLRVPYRGGEYFFHDGYWYRPDGPRYVLVVPPRGVRVRSLPPYAEQVWLGSVLYFLAAGTYYLWHADTR
EYEVVSPPPRAAGPVYPVSGPAASYDVVAYPARGQGPDQQSRDRYECHRWAVVESGFDPAGATYAPAAEVAN
GYRRAMAACLSGRGYSVN*
AnnotationID:6531GeneID:6530
AnnotatorUID: diggins
Modification Date/Time: 2006-04-23 19:07:50
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:12851




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30160




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6530
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
199998
                           gb|AAN70345.1|AE016676_5
                           (AE016792) hypothetical protein [Pseudomonas putida KT2440]
                           330
                           40.60
                           49.39
                           97
                           677.0
     

     
     
199999
                           gb|AAO58221.1|
                           (AE016873) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           473
                           22.83
                           28.11
                           269
                           580.0
     

     






      

          
GC ORFID: 49532How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3873484Stop: 3872780

          
Length: 705


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold4_revised_gene5348 related to: gi|5737842|gb|AAD50121.1|AF153362_1 (AF153362) adenylyl cyclase [Dictyostelium discoideum]Homolog Bit Score 229.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5348 related to: gi|5737842|gb|AAD50121.1|AF153362_1 (AF153362) adenylyl cyclase [Dictyostelium discoideum] (BLASTP 229)

          
GC ORF Sequence

           
ATGAACGGTGGATGGTGGCGAATGCTCGGGGTGGGCGCTCTCTCGCTGAGCCTGTGCGTCCAGGCGCAGGCC 
GACGACGGCCGAGGGGGACGCGGCGGACCCGGCGGCGAGCGCGGTGTTGCCCACGGACAACCGGGACCTGGC 
CGCGGCGAAGCGCATGGCGGCAGTTGGGGACCGCATCCCGACTGGCGTCCGGGCCGGATGGTGGATGCCTTG 
CCGCGCGGACACCTGCGGGTGCCCTATCGCGGCGGCGAGTATTTCTTCCACGACGGCTACTGGTACCGACCC 
GACGGCCCGCGCTATGTGCTGGTCGTGCCGCCCCGCGGGGTGCGCGTCCGCAGCCTGCCGCCCTATGCGGAG 
CAGGTCTGGCTGGGCAGCGTGCTGTACTTCCTTGCCGCCGGCACTTACTACCTGTGGCATGCCGACACCCGC 
GAGTACGAAGTGGTCAGCCCGCCGCCGCGGGCAGCGGGACCCGTTTATCCGGTCAGCGGGCCGGCCGCCAGC 
TACGACGTGGTGGCCTACCCCGCGCGCGGCCAGGGGCCCGACCAGCAGAGCCGCGACCGCTACGAGTGCCAC 
CGCTGGGCGGTGGTCGAGAGCGGCTTCGACCCGGCGGGGGCGACCTACGCGCCGGCCGCCGAGGTCGCCAAC 
GGCTACCGCCGGGCCATGGCCGCCTGCCTGAGCGGGCGCGGCTACAGCGTCAACTGA