ViewGene
Locus Name:
GeneID:
Location:

GeneID:6529
TrivialName: PA14_12660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12660
PAO1 Ortholog Locus:
Sequence Length:1131
Protein Length:376
Start: 1086417
Stop: 1087547
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAE42907.1| (BX640419) putative GTP-binding protein [Bordetella pertussis]
Identities = 68/226 (30%), Positives = 90/226 (39%), Gaps = 31/226 (13%)
Sequence:
ATGAATGGGGGCGAAGCATGCGGCGCGCCGGGCCGCTTGTCCAGCCCGGCGCGCGCCCGGTCAATGGGGCAG
CAGGAAGCGCGCGGCGAGCGGCAGGTGGTTGGAGATCTGCAGCGTATCGCTGCGCCGGACCCGGGCATCGAG
ACGGGTCAGCGAGGGGCTGTGGAACAGGTAGTCGAGGGTCCGATCCGGCCCCTGGACCCGTGGGTCGTTGGG
GAAGTGCGTGTACCAGCGAACCTGGTCGACGCCACTGGCCTCTTCCAGCGACGGCACCATCGGGAAGCGCCC
GCTCAGGACGGCCAGCTCGCTGTCTTCCCGGTAGGGCGCGCGCAGCGGCGCCAGCAGGTAGGGATACTGGCC
GGGCGGCAGCAGGTTGAGGTCGCCGCCGAGCAGCCAGGGCGTGCGCCTGGCCTGCAGTTCGTCGAGCAGCGT
ACGGGTGGTCTCGACCTGGCGCTCGAGGGTGTCGTCGTTCGCCTGCGGGCGGTCGAAGCGGGCGTTGAGCAC
GGCCAGCTCGCCGCCGCCGTCGATCGGCAGGTGGCTGACCAGGATCGCCGGGCGCGGCCCGAACAGGCGGTC
GAACAGCCCGCCATCGCGTGGCGGCAACTGGCGCCGCTCGGCGCTATCGATGCGATAGCGGCTCAGGGTGGC
CTGCTTGCGGCCGACGCTGCCGAAGATGTGCGGCGTCGGCACGAAGGCCGACTTCCACTCGTAGGCCTGGGC
GCTGCAATGGTAGAGATCGTTGATGCGCTCCTGGATCAGCGCCAGTTGGTCCTGATCGTCGGTGGCGCTGGA
GCCGTCGTCGATCTCCTGGAGCAGGACCAGGTCCGGCTGCTCGTCGCGGATCACCCGGACCACCTCGTCGAG
GGTGAACGCCAGGTCTTCGGCGGTGGGGCGCTGGTCCGGGCCGGTGGCATCCGGCAGGTCGTCCCAGAAGAC
GTAGCGCTTGCCGGCCAGGTACTGGATGTTCCAGGTCATCACCTTCAGGGCCTGCCCCGGCTTCAGCGCCGG
CGCGGCGCCCTGGCAATGCAGGGGCGCGGCTTCGCGATCGGCGGGTTGCCAGCTCAGCAGGTAGCTGGCGAG
CAGGGCACCGCCGACCAGCAGGAGCAGGCCGACGAACAGCAGGTTGCGTAG
Translation:
MNGGEACGAPGRLSSPARARSMGQQEARGERQVVGDLQRIAAPDPGIETGQRGAVEQVVEGPIRPLDPWVVG
EVRVPANLVDATGLFQRRHHREAPAQDGQLAVFPVGRAQRRQQVGILAGRQQVEVAAEQPGRAPGLQFVEQR
TGGLDLALEGVVVRLRAVEAGVEHGQLAAAVDRQVADQDRRARPEQAVEQPAIAWRQLAPLGAIDAIAAQGG
LLAADAAEDVRRRHEGRLPLVGLGAAMVEIVDALLDQRQLVLIVGGAGAVVDLLEQDQVRLLVADHPDHLVE
GERQVFGGGALVRAGGIRQVVPEDVALAGQVLDVPGHHLQGLPRLQRRRGALAMQGRGFAIGGLPAQQVAGE
QGTADQQEQADEQQVA*
AnnotationID:6530GeneID:6529
AnnotatorUID: diggins
Modification Date/Time: 2006-02-09 08:08:37
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:12849




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30158




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49531How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3867521Stop: 3866391

          
Length: 1131


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAATGGGGGCGAAGCATGCGGCGCGCCGGGCCGCTTGTCCAGCCCGGCGCGCGCCCGGTCAATGGGGCAG 
CAGGAAGCGCGCGGCGAGCGGCAGGTGGTTGGAGATCTGCAGCGTATCGCTGCGCCGGACCCGGGCATCGAG 
ACGGGTCAGCGAGGGGCTGTGGAACAGGTAGTCGAGGGTCCGATCCGGCCCCTGGACCCGTGGGTCGTTGGG 
GAAGTGCGTGTACCAGCGAACCTGGTCGACGCCACTGGCCTCTTCCAGCGACGGCACCATCGGGAAGCGCCC 
GCTCAGGACGGCCAGCTCGCTGTCTTCCCGGTAGGGCGCGCGCAGCGGCGCCAGCAGGTAGGGATACTGGCC 
GGGCGGCAGCAGGTTGAGGTCGCCGCCGAGCAGCCAGGGCGTGCGCCTGGCCTGCAGTTCGTCGAGCAGCGT 
ACGGGTGGTCTCGACCTGGCGCTCGAGGGTGTCGTCGTTCGCCTGCGGGCGGTCGAAGCGGGCGTTGAGCAC 
GGCCAGCTCGCCGCCGCCGTCGATCGGCAGGTGGCTGACCAGGATCGCCGGGCGCGGCCCGAACAGGCGGTC 
GAACAGCCCGCCATCGCGTGGCGGCAACTGGCGCCGCTCGGCGCTATCGATGCGATAGCGGCTCAGGGTGGC 
CTGCTTGCGGCCGACGCTGCCGAAGATGTGCGGCGTCGGCACGAAGGCCGACTTCCACTCGTAGGCCTGGGC 
GCTGCAATGGTAGAGATCGTTGATGCGCTCCTGGATCAGCGCCAGTTGGTCCTGATCGTCGGTGGCGCTGGA 
GCCGTCGTCGATCTCCTGGAGCAGGACCAGGTCCGGCTGCTCGTCGCGGATCACCCGGACCACCTCGTCGAG 
GGTGAACGCCAGGTCTTCGGCGGTGGGGCGCTGGTCCGGGCCGGTGGCATCCGGCAGGTCGTCCCAGAAGAC 
GTAGCGCTTGCCGGCCAGGTACTGGATGTTCCAGGTCATCACCTTCAGGGCCTGCCCCGGCTTCAGCGCCGG 
CGCGGCGCCCTGGCAATGCAGGGGCGCGGCTTCGCGATCGGCGGGTTGCCAGCTCAGCAGGTAGCTGGCGAG 
CAGGGCACCGCCGACCAGCAGGAGCAGGCCGACGAACAGCAGGTTGCGTAG