ViewGene
Locus Name:
GeneID:
Location:

GeneID:6521
TrivialName: PA14_12950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12950
PAO1 Ortholog Locus:
Sequence Length:798
Protein Length:265
Start: 1109365
Stop: 1108568
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAA80637.1| (AP000062) 108aa long hypothetical protein [Aeropyrum pernix]
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Sequence:
TTGCGCGGGACAGGATTGGCGACGGCGAGTCCGAGGGTATCAGTGGGCATGTTCGGCCTCCGCGACATCGAG
GAATTCGTCCAGCAACGCCTGGCGCAAACGGCCGAACTCGGGATCGGACTTGATCGAACGCACCGTTTCGCC
GGCGGCGTAACGCCGCGCGAAGTCCACCGGCAGGCGCTTGACGATGCGCGCCGGCGGGCCGTCCATCACCAC
CAGGTCGGTAGCCAGGAACAGGGCTTCGTCGACGCTGTGGGTGATCAGGAAGAGGCCCTTGCCGGTCTGCTT
CCACAGGTCCAGCAGGAGCACCTGCATGCGCTCGCGGGTCAGCGCGTCGAGCGCGCCGAACGGCTCGTCGAG
CAGCAGGAAGTCCGGCTCGACCGCCAGCGCGCGTGCCAGCCCGAGGCGTTGCCGCTGGCCGCCGGAGAGCTC
GGCGACGGACTGCTCGGCGTACTCCTGGAGGCCCACCAGTTGCAGGACCTGGCGCGCCCGCGCGGTGCGCTC
GGCCTTGCCCAGGCCACGGATGCGCAGGCCCAGGGCGACGTTGTCGAGGGCGTTGAGCCAGGGCATCAGGGC
GTCGTCCTGGAATACCACGCCGCGCTCGCCGCCAGGCCCTTCGAGTGTCCGGCCGTCGATCTGCACGCGTCC
CTGGTCCGGCGTCTGGAAACCGGCGAGGATGTTCAGCAGTGTCGACTTGCCGCAGCCCGAAGGACCCAGCAC
CACCAGCGACTCGCCCTTGGCAAGGCCCAGGCTGAGATCGCGGAGGATGGCGCGGCGCTGGCCGCGCTGTTC
GAATGA
Translation:
MRGTGLATASPRVSVGMFGLRDIEEFVQQRLAQTAELGIGLDRTHRFAGGVTPREVHRQALDDARRRAVHHH
QVGSQEQGFVDAVGDQEEALAGLLPQVQQEHLHALAGQRVERAERLVEQQEVRLDRQRACQPEALPLAAGEL
GDGLLGVLLEAHQLQDLARPRGALGLAQATDAQAQGDVVEGVEPGHQGVVLEYHAALAARPFECPAVDLHAS
LVRRLETGEDVQQCRLAAARRTQHHQRLALGKAQAEIAEDGAALAALFE*
AnnotationID:6522GeneID:6521
AnnotatorUID: diggins
Modification Date/Time: 2006-02-09 08:08:01
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold






   
Genomic Context:






   
Comment:


















    ReferenceID:16282




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30144




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49523How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3844573Stop: 3845370

          
Length: 798


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
TTGCGCGGGACAGGATTGGCGACGGCGAGTCCGAGGGTATCAGTGGGCATGTTCGGCCTCCGCGACATCGAG 
GAATTCGTCCAGCAACGCCTGGCGCAAACGGCCGAACTCGGGATCGGACTTGATCGAACGCACCGTTTCGCC 
GGCGGCGTAACGCCGCGCGAAGTCCACCGGCAGGCGCTTGACGATGCGCGCCGGCGGGCCGTCCATCACCAC 
CAGGTCGGTAGCCAGGAACAGGGCTTCGTCGACGCTGTGGGTGATCAGGAAGAGGCCCTTGCCGGTCTGCTT 
CCACAGGTCCAGCAGGAGCACCTGCATGCGCTCGCGGGTCAGCGCGTCGAGCGCGCCGAACGGCTCGTCGAG 
CAGCAGGAAGTCCGGCTCGACCGCCAGCGCGCGTGCCAGCCCGAGGCGTTGCCGCTGGCCGCCGGAGAGCTC 
GGCGACGGACTGCTCGGCGTACTCCTGGAGGCCCACCAGTTGCAGGACCTGGCGCGCCCGCGCGGTGCGCTC 
GGCCTTGCCCAGGCCACGGATGCGCAGGCCCAGGGCGACGTTGTCGAGGGCGTTGAGCCAGGGCATCAGGGC 
GTCGTCCTGGAATACCACGCCGCGCTCGCCGCCAGGCCCTTCGAGTGTCCGGCCGTCGATCTGCACGCGTCC 
CTGGTCCGGCGTCTGGAAACCGGCGAGGATGTTCAGCAGTGTCGACTTGCCGCAGCCCGAAGGACCCAGCAC 
CACCAGCGACTCGCCCTTGGCAAGGCCCAGGCTGAGATCGCGGAGGATGGCGCGGCGCTGGCCGCGCTGTTC 
GAATGA