ViewGene
Locus Name:
GeneID:
Location:

GeneID:6509
TrivialName: PA14_13440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13440
PAO1 Ortholog Locus:
Sequence Length:1068
Protein Length:355
Start: 1156818
Stop: 1157885
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK23057.1| (AE005785) hypothetical protein [Caulobacter crescentus CB15]
Identities = 82/278 (29%), Positives = 102/278 (36%), Gaps = 57/278 (20%)
Sequence:
ATGAGGGACACTCCAGTGGATCTTTCGAGGTTGGCTTTCCTCCTCTGTCACGCGAGGTGGGGAAAAAGGCTC
AGGTACGCGAAAATATCTTTTCGCTCATTCGCGCGGGTGCACGCCGACCCAGTAGCGGGTGACGCGCCGTAC
CTCCACAGGCAGCACCGCCGGCAGGGTGGCGAGGATCCGCTCGCTATCGTCCAGCGGATAGCTGCCGGAAAT
CCGCAGGCCGCCGATGCGCGGGTCGCAGCCCAGCCGGCCGGGGCGGTAGCGCGCGACTTCGGCGAGGAATTC
GTCCAGGCGCATGCCGGCGGCCACCAGCATGCCGTCGGTCCAGGCGCCGCTGCCGACCGGCAACGGCTGCGG
AACGCCGAGTCGCTCGCGGTCGAAGTCCAGCTGCCGGCCGCTGGGCAGCAGCAGGCCCTGGCCGGCGTGGTT
CTCCACCTGCACCGCGCCTTCGTGGACGGCGACGCGGGTGCGTCCGGCGAACTGGCGCACGTCGAACCGGGT
GCCCACCGGTCGCAGCCGGCCTTCCGCGCTGTACACGTGCAGCGGGCGCGGGTCGTGGCCGGTGCTGAGCTG
GATTTCCCCGCGCAGCAGGAGCAGGCGCCGTTCGCCGGCATCGAAGCGGACATCCACCGCCGTGTCGCTGTT
CAGCTCGAGGCGACTGCCGTCGGCCAGGGCCAGGCGCCGGCGTTCGCCGACGCCGGTGGCATAGTCGGCGCT
CCAGCGCTGCAGGCTGCCGCTCTCGCGCAGGCCCCAGGCGCTGCCGCCGGCGGCCAGGACCAGCAGCAGGGT
CTTCAGCGCGCGCCGGCGTTGCGGCGAATGCGGTGCGTTGATGGCGGCCAGGGCCAGTGGCGTGCCTATCCC
GGCCAGGCGCTGGTTGACCGCCTCGATGTGGCTCCAGGCCTGCTCGTGTTCCGGGGCCGCCTGGCGCCAGCG
CTGCCAGGCCTGGCGCAGGCGTTCGTCGTCGGCGCCGCCCTGCAGCTCGACCAGCCAGCGCACGGCCTGTTC
GGCCACCTGCGGCGGCACCTTGGGTGCGGCGGGCAGGCTCATGGCAGCTCGGCGAAGTAG
Translation:
MRDTPVDLSRLAFLLCHARWGKRLRYAKISFRSFARVHADPVAGDAPYLHRQHRRQGGEDPLAIVQRIAAGN
PQAADARVAAQPAGAVARDFGEEFVQAHAGGHQHAVGPGAAADRQRLRNAESLAVEVQLPAAGQQQALAGVV
LHLHRAFVDGDAGASGELAHVEPGAHRSQPAFRAVHVQRARVVAGAELDFPAQQEQAPFAGIEADIHRRVAV
QLEATAVGQGQAPAFADAGGIVGAPALQAAALAQAPGAAAGGQDQQQGLQRAPALRRMRCVDGGQGQWRAYP
GQALVDRLDVAPGLLVFRGRLAPALPGLAQAFVVGAALQLDQPAHGLFGHLRRHLGCGGQAHGSSAK*
AnnotationID:6510GeneID:6509
AnnotatorUID: diggins
Modification Date/Time: 2005-04-25 20:08:01
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:12814




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30121




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49511How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3797120Stop: 3796053

          
Length: 1068


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAGGGACACTCCAGTGGATCTTTCGAGGTTGGCTTTCCTCCTCTGTCACGCGAGGTGGGGAAAAAGGCTC 
AGGTACGCGAAAATATCTTTTCGCTCATTCGCGCGGGTGCACGCCGACCCAGTAGCGGGTGACGCGCCGTAC 
CTCCACAGGCAGCACCGCCGGCAGGGTGGCGAGGATCCGCTCGCTATCGTCCAGCGGATAGCTGCCGGAAAT 
CCGCAGGCCGCCGATGCGCGGGTCGCAGCCCAGCCGGCCGGGGCGGTAGCGCGCGACTTCGGCGAGGAATTC 
GTCCAGGCGCATGCCGGCGGCCACCAGCATGCCGTCGGTCCAGGCGCCGCTGCCGACCGGCAACGGCTGCGG 
AACGCCGAGTCGCTCGCGGTCGAAGTCCAGCTGCCGGCCGCTGGGCAGCAGCAGGCCCTGGCCGGCGTGGTT 
CTCCACCTGCACCGCGCCTTCGTGGACGGCGACGCGGGTGCGTCCGGCGAACTGGCGCACGTCGAACCGGGT 
GCCCACCGGTCGCAGCCGGCCTTCCGCGCTGTACACGTGCAGCGGGCGCGGGTCGTGGCCGGTGCTGAGCTG 
GATTTCCCCGCGCAGCAGGAGCAGGCGCCGTTCGCCGGCATCGAAGCGGACATCCACCGCCGTGTCGCTGTT 
CAGCTCGAGGCGACTGCCGTCGGCCAGGGCCAGGCGCCGGCGTTCGCCGACGCCGGTGGCATAGTCGGCGCT 
CCAGCGCTGCAGGCTGCCGCTCTCGCGCAGGCCCCAGGCGCTGCCGCCGGCGGCCAGGACCAGCAGCAGGGT 
CTTCAGCGCGCGCCGGCGTTGCGGCGAATGCGGTGCGTTGATGGCGGCCAGGGCCAGTGGCGTGCCTATCCC 
GGCCAGGCGCTGGTTGACCGCCTCGATGTGGCTCCAGGCCTGCTCGTGTTCCGGGGCCGCCTGGCGCCAGCG 
CTGCCAGGCCTGGCGCAGGCGTTCGTCGTCGGCGCCGCCCTGCAGCTCGACCAGCCAGCGCACGGCCTGTTC 
GGCCACCTGCGGCGGCACCTTGGGTGCGGCGGGCAGGCTCATGGCAGCTCGGCGAAGTAG