ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6508

TrivialName: PA14_13480

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_13480

PAO1 Ortholog Locus:

Sequence Length: 2154

Protein Length: 717

Start: 1159402

Stop: 1161555

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: dbj|BAC52080.1| (AP005960) blr6815 [Bradyrhizobium japonicum USDA 110] Identities = 60/203 (29%), Positives = 86/203 (42%), Gaps = 12/203 (5%)

Sequence:

ATGAAAAGCGCAAGAATGGACAATGGTCGCGCCCGGCTTCGCCCGCAGACTGACGGCATCCTGTCGTTGCGG
AGTCACCATGAATCTTTCGCTGTACCTGCTCACCGTGCTCATCTGGGGCACCACCTGGATCGCCATCAAGCT
GCAGATGGGCCCGGTGGCGATCACCCTGTCGATCGCCTACCGCTTCGCCCTGGCGGCGCTGGTGCTGTTCGC
CGTGCTGCTGCTCGGCCGCCGCCTGCAAAGGCTGGACGCACGGGGCCAACGCCTGTGCATGGCCCAGGGCGT
ATGCCTGTTCTGCCTGAATTTCATCTGCTTCTATACCGCCAGCCAGTGGATTCCCAGCGGCCTGGTGGCCGT
GGTGTTCTCCACCGCCACCCTGTGGAATGCGCTGAACGCCCGCCTGTGGTTCGGCCAGCGCATCGCGTCGAA
CGTGATGGCCGGTGGCGGTCTCGGCCTGCTCGGCCTGGGGCTGCTGTTCTGGCCGGAACTGGTGGGTCACCA
GGCCACCCCGGAAACCTTCTACGGCCTCGGCCTGGCCCTGCTAGGCACGCTGTGTTTCTCCACCGGCAACAT
GCTTTCCAGCCTGCAACAGAAGGCCGGCATCCGCCCGCTCACCGGCAATGCCTGGAGCATGCTCTATGGCAC
CCTGATCCTCCTGGCGCTGTGCCTGTTCCAGGGCGTGCCGCTGAATTTCGACTGGAGCGCGCGCTACGTCGG
CTCGCTGCTGTACCTGGCGATCCCCGGCTCGGTGATCGGCTTCACCGCCTATCTGACCCTGGTCGGGCGCAT
GGGCCCGGATCGCGCCGCCTACTGCACCGTGCTGTTCCCGGTGGTGGCGCTGAACATCTCGGCCTTCGCCGA
GGGCTACCGCTGGACCGCACCGGCGCTGGCCGGGCTGGTCCTGGTGATGCTCGGCAACGTCTTGGTGTTCCG
CAAGCCGAAGGCGCCGGCGCTGGCCGGGCCGGCGCGCTCGACCTAGCGGAGAGCGAGGCGCGCTCAGCCGCG
TCGCCACACCTGCGGATTGACCAGGTCCAGCGGCCGCTCGCCGCGCAGGGCCGCCTCGAAGTTCTGCAGCGC
CCGCTCGGCCATGGCCCGGCGGGTCTCGTGGGTGGCCGAGCCGATGTGCGGCAGGGTCACCACGTTGTCCAG
GGCGAACAGCGGCGATTCGGCCAGCGGTTCCTTCTCGTAGACATCCAGGCCGGCGCCGAGGATGCGTTTCTC
CCGCAGGGCGGCGACCAGCGCGGCCTCGTCGACCACCTGGCCGCGGGCGACGTTGACCAGGATCGCCGAGGG
CTTCATCAGGCCCAGTTCGCGCGCGCCGATCAACCGCCGGGTCTGCGCTCCCAGCGGCACCACCACGCAGAC
GAAGTCGGCCTCGCCGAGCAGTTCGTCGAAGCCGAGGAAGCGCGCGCCGAGTTCCTGTTCCAGTTCCGGCTT
GCGGTTGTTGCCGTGGTAGAGCACCTGCATGCCGAAGCCGAAACGGCCGCGCCGGGCGATGGCCGCGCCGAT
CCGGCCGAGGCCGAGGATGCCGAGTTTCTTGCCATGCACATCGGTGCCGAACTGCGGGGCATCGACGGTGCG
CTTCCAGTTCCCGGCCTTGACCCAGGCGTCCAGTTCGGCGACCCGTCGCGCGGCGCTGATCAGCAGGGCGAA
GCCGAGGTCGGCGGTGGTCTCGGTGAGGACGTCGGGCGTGTTGGTGAGGGCGATGCCGCGGCGGTTCAGGTA
GTCCAGGTCATAGTTGTCGTAGCCGACCGAGACGCTGGAGATGACTTCCAGCTGCTTCGCCTGTTCCAGTTG
CCTGGCGCCGAGCGGCCGGCCGACGCCGATCATGCCGTGGGTATCGGGCAGGGCGGCGGCGTACTGGGCGTC
GATGTCGCCCTGTTTCGGTTCGAGCACGCGGACGTTGAACTGGCGTTGCAGGCGTTCGAGATGCTCGGGGGC
GAGGCGACTGAAGACGAAGACGTTCTTTTTCATGACGGGACTCTGCAAGCGGGAGCGAAAGCGCCGACcATA
CCACCGCCATCGAAGCGGCGGGCAGGGGCCCGCCACTGGGCGGGCGATTATCGGCTCAGGAGGGTCTTCCGA
GTTCCAGGCCCAGCTCCACCAGCGCCGCTTCGTCGCGCTGGAGCAGGCCGGGCAGGCTTTCCTTGA

Translation:

MKSARMDNGRARLRPQTDGILSLRSHHESFAVPAHRAHLGHHLDRHQAADGPGGDHPVDRLPLRPGGAGAVR
RAAARPPPAKAGRTGPTPVHGPGRMPVLPEFHLLLYRQPVDSQRPGGRGVLHRHPVECAERPPVVRPAHRVE
RDGRWRSRPARPGAAVLAGTGGSPGHPGNLLRPRPGPARHAVFLHRQHAFQPATEGRHPPAHRQCLEHALWH
PDPPGAVPVPGRAAEFRLERALRRLAAVPGDPRLGDRLHRLSDPGRAHGPGSRRLLHRAVPGGGAEHLGLRR
GLPLDRTGAGRAGPGDARQRLGVPQAEGAGAGRAGALDLAESEARSAASPHLRIDQVQRPLAAQGRLEVLQR
PLGHGPAGLVGGRADVRQGHHVVQGEQRRFGQRFLLVDIQAGAEDAFLPQGGDQRGLVDHLAAGDVDQDRRG
LHQAQFARADQPPGLRSQRHHHADEVGLAEQFVEAEEARAEFLFQFRLAVVAVVEHLHAEAETAAPGDGRAD
PAEAEDAEFLAMHIGAELRGIDGALPVPGLDPGVQFGDPSRGADQQGEAEVGGGLGEDVGRVGEGDAAAVQV
VQVIVVVADRDAGDDFQLLRLFQLPGAERPADADHAVGIGQGGGVLGVDVALFRFEHADVELALQAFEMLGG
EATEDEDVLFHDGTLQAGAKAPTIPPPSKRRAGARHWAGDYRLRRVFRVPGPAPPAPLRRAGAGRAGFP*

AnnotationID:6509 GeneID:6508

AnnotatorUID: diggins

Modification Date/Time: 2004-04-08 21:09:15

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:12812

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30119

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:31668

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6508_cdd.html

URL:

GC ORFID: `49510`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `3794536`	Stop: `3792383`
Length: `2154`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGAAAAGCGCAAGAATGGACAATGGTCGCGCCCGGCTTCGCCCGCAGACTGACGGCATCCTGTCGTTGCGG AGTCACCATGAATCTTTCGCTGTACCTGCTCACCGTGCTCATCTGGGGCACCACCTGGATCGCCATCAAGCT GCAGATGGGCCCGGTGGCGATCACCCTGTCGATCGCCTACCGCTTCGCCCTGGCGGCGCTGGTGCTGTTCGC CGTGCTGCTGCTCGGCCGCCGCCTGCAAAGGCTGGACGCACGGGGCCAACGCCTGTGCATGGCCCAGGGCGT ATGCCTGTTCTGCCTGAATTTCATCTGCTTCTATACCGCCAGCCAGTGGATTCCCAGCGGCCTGGTGGCCGT GGTGTTCTCCACCGCCACCCTGTGGAATGCGCTGAACGCCCGCCTGTGGTTCGGCCAGCGCATCGCGTCGAA CGTGATGGCCGGTGGCGGTCTCGGCCTGCTCGGCCTGGGGCTGCTGTTCTGGCCGGAACTGGTGGGTCACCA GGCCACCCCGGAAACCTTCTACGGCCTCGGCCTGGCCCTGCTAGGCACGCTGTGTTTCTCCACCGGCAACAT GCTTTCCAGCCTGCAACAGAAGGCCGGCATCCGCCCGCTCACCGGCAATGCCTGGAGCATGCTCTATGGCAC CCTGATCCTCCTGGCGCTGTGCCTGTTCCAGGGCGTGCCGCTGAATTTCGACTGGAGCGCGCGCTACGTCGG CTCGCTGCTGTACCTGGCGATCCCCGGCTCGGTGATCGGCTTCACCGCCTATCTGACCCTGGTCGGGCGCAT GGGCCCGGATCGCGCCGCCTACTGCACCGTGCTGTTCCCGGTGGTGGCGCTGAACATCTCGGCCTTCGCCGA GGGCTACCGCTGGACCGCACCGGCGCTGGCCGGGCTGGTCCTGGTGATGCTCGGCAACGTCTTGGTGTTCCG CAAGCCGAAGGCGCCGGCGCTGGCCGGGCCGGCGCGCTCGACCTAGCGGAGAGCGAGGCGCGCTCAGCCGCG TCGCCACACCTGCGGATTGACCAGGTCCAGCGGCCGCTCGCCGCGCAGGGCCGCCTCGAAGTTCTGCAGCGC CCGCTCGGCCATGGCCCGGCGGGTCTCGTGGGTGGCCGAGCCGATGTGCGGCAGGGTCACCACGTTGTCCAG GGCGAACAGCGGCGATTCGGCCAGCGGTTCCTTCTCGTAGACATCCAGGCCGGCGCCGAGGATGCGTTTCTC CCGCAGGGCGGCGACCAGCGCGGCCTCGTCGACCACCTGGCCGCGGGCGACGTTGACCAGGATCGCCGAGGG CTTCATCAGGCCCAGTTCGCGCGCGCCGATCAACCGCCGGGTCTGCGCTCCCAGCGGCACCACCACGCAGAC GAAGTCGGCCTCGCCGAGCAGTTCGTCGAAGCCGAGGAAGCGCGCGCCGAGTTCCTGTTCCAGTTCCGGCTT GCGGTTGTTGCCGTGGTAGAGCACCTGCATGCCGAAGCCGAAACGGCCGCGCCGGGCGATGGCCGCGCCGAT CCGGCCGAGGCCGAGGATGCCGAGTTTCTTGCCATGCACATCGGTGCCGAACTGCGGGGCATCGACGGTGCG CTTCCAGTTCCCGGCCTTGACCCAGGCGTCCAGTTCGGCGACCCGTCGCGCGGCGCTGATCAGCAGGGCGAA GCCGAGGTCGGCGGTGGTCTCGGTGAGGACGTCGGGCGTGTTGGTGAGGGCGATGCCGCGGCGGTTCAGGTA GTCCAGGTCATAGTTGTCGTAGCCGACCGAGACGCTGGAGATGACTTCCAGCTGCTTCGCCTGTTCCAGTTG CCTGGCGCCGAGCGGCCGGCCGACGCCGATCATGCCGTGGGTATCGGGCAGGGCGGCGGCGTACTGGGCGTC GATGTCGCCCTGTTTCGGTTCGAGCACGCGGACGTTGAACTGGCGTTGCAGGCGTTCGAGATGCTCGGGGGC GAGGCGACTGAAGACGAAGACGTTCTTTTTCATGACGGGACTCTGCAAGCGGGAGCGAAAGCGCCGACcATA CCACCGCCATCGAAGCGGCGGGCAGGGGCCCGCCACTGGGCGGGCGATTATCGGCTCAGGAGGGTCTTCCGA GTTCCAGGCCCAGCTCCACCAGCGCCGCTTCGTCGCGCTGGAGCAGGCCGGGCAGGCTTTCCTTGA