ViewGene

Locus Name:
GeneID:
Location:

GeneID:6501
TrivialName: PA14_13760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13760
PAO1 Ortholog Locus:
Sequence Length:2790
Protein Length:929
Start: 1183615
Stop: 1180826
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAC73177.1| (AP005043) hypothetical protein [Streptomyces avermitilis MA-4680]
Identities = 139/590 (23%), Positives = 188/590 (31%), Gaps = 121/590 (20%)
Sequence:
GTGACTCATCTTGATCTCCTCACCCGGTCTGTGCCGGGCGTTACAACGCTAATCAGGGGTTGCCGCGGGCTG
CTGCCGACGGACTCAACAGGGACTCTCCGCACCCTTGCGCGCGTACCACCACCAGGTGGCGACGATGCAGCT
CAGGTAGTAGGCGATGAACACGTAGAGGGCGCCCTCGGCGCTGCCGGTCATGTGCAGCGAGGTGCCGAACGC
CTTCGGGATGAAGAACCCGCCGAAGGCGCCGATGGCGGCGGAGAAGCCGATCACCGCGGCCGACTCCATGCT
CGCGTTGCGCGCCGCGCCGGCTTCGTCGGCCTGGCCGTCGCGCACCCGCCGGGCCCACTCGTTGCGGAAGAT
CACCGGGATCATGCGGAAGGTGGAACCGTTGCCGATGCCGGCGAAGAAGAACAGCAGGATGAAGGCGCCAAG
GAAGCCGAAGAAGTTGCCCTGGCCGCCGTCGCCCGGCAGGAAGGCGATCACCGTGAACACCCCGCCGATCAT
CAGTGCGTAGTTCCACAGGGTGATCCGCGCGCCGCCGAACTTGTCCGCCAGCCAGCCGCCCAGGGGCCGGCT
GAGGGCGCCCACCAGCGGACCGAGGAAGGCGTATTGCAGCGGGTTGATGTCGGGGAACTGGGTCTTGCTGAG
CATCGCGAAGCCGGCCGAGAAGCCGATGAACGAGCCGAAGGTGGCCACGTACAGCCAGCACATCAGCCAGTT
GTGCTTGCGCTTGAAGATCACCGCCTGGTCGCGGAACGAGGCCTTGGCGTCGGCGATGTCGTTCATCCCGAA
CCAGGCCGCGACCGATACCACGGCGATGAACGGCACCCAGATCCAGCCGGCGTTCTGCAGCCACAGGCGACC
GCCGTCGCCGAGCTGCTGCGGCTCGCCGCCGAAGGCGCCGAACAGGCCGCCGGCCACCGCCAGCGGCACGGC
GAACTGCATCACCGAGACGCCGAGGTTGCCGAGCCCGGCATTCAGGCCGAGGGCGGTGCCCTGCTGGCTCTT
CGGATAGAAGAAGCTGATGTTGGACATGCTCGAGGCGAAGTTGCCGCCGCCGAAGCCGCAGAGCAGCGCGAT
CAGGGCGAACACCCAGTACGGGGTGCTCGGGTCCTGCACGGCGAAGCCCAGCCAGATGCACGGGATCAGCAT
CGAGGCGGTGCTCAGGGCGGTCCAGCGACGGCCGCCGAAGATCGGCACCATGAACGAATAGAACACCCGCAG
GGTGGCGCCGGAGATCGACGGCAGCGCCGCGAGCAGGAACAGCTGGTCGTTGCTGAAGGCGAAGCCGGCGCT
GTTCAGGCGCACGGTCACCGTGCTCCAGATCATCCACACGGCGAAGGCGAGCAGCAGCGCGGGGATCGAGAT
CCACAGGTTGCGGCTGGCGATGCGCTTGCCGTTGCGCGCCCAGAACTCGGGGTCCTCGGGGCGCCAGTCGAG
CAGCAGCGGTCCCCGTGCGGCTTTCAGTTGGGTATTGGCGATCATGCCCATGACGGCATTACCTCAGGAGTG
GGTGGGAAGGGTGGGAGGAAGGTCGACGTCGGCCGAGGCGGCCTGGCCGTCGATGCGGCGTTGCTGCTTGAT
CGCGTAGTGCATCCAGACCATGCAGACCACGGTCAGGCCGAACAGCAACATGAAGCAGGAGGAGCGCACGCC
GATGTGGTCGGCGGCGTAGCCGAACAGGATCGGCAGGCAGAAGCCGCCGAGGCCGCCGATCACCCCGACCAT
GCCGCCGACGGTGCCCATGTTGCTCGGGTAGTAGTCGTGGATGATCCGGTACACGCTGGCCTTGCCGAAGCC
CTGGGCGATGCCGACGACGAACACCAGGAAGGTGAACAGCCAGACGTTCAGGCCGATACCCAGGCTGAGGTC
GCCCTGGATGCCGTGGATGGTCATGGTGGTCTGCGGGTAGGAGAGGAAGAACAGGCACACCAGGCAGACCCA
GAACACGCCCCAATTCACCGAGCGCGCGCCGTAGTGGTCGCTGAACCAGCCACCGAGGGCGCGGATCAGGCC
GGACGGCAGGGTGAACAGCATGGTGATGAAGGACGCGGTCTTCAGGTCCAGGCCGTATTCGGCGATGTAGTA
CTTCGGCAGCCACAGGGCCAGGGCGACGAAGCCGCCGAAGACGAAGAAGTAGTACAGGCCGAAGCGCCAGAC
GCGCAGCTCGGCGAGCGGCGCCAGTTGCTTGGCCAGGGTCGGCCGCTGGCTGGCCTCGGCGGCACCCTTGAG
GTGCGCCGGATCGGTCCAGGTGAACAGCCAGAACAGCACGGCGGTGACCAGCATGGCCACCGAGTAGACCTG
CGGCACCATGCGCCAGCCGAAGGCAACCACGATCATCGGCGCCACCAGGTTGGTGATCGCCGCGCCGGCGTT
GCCGGCGCCGAAGATGCCCATCGCGGTGCCCTGGCGCTCCTTCTCGAACCAGGCCGAGGTGTAGGCGATGCC
GACCGCGAAGGAGCCGCCAGCCAGGCCGACGAACAGGCCGAGCACCAGGTAGTGCCAGTACTGGCTGGCGAA
GGCCAGGCCGTAGATCGGGATGGCCACCAGCAGCATGTGGATGAAGAACACGATGCGGCCGCCGAAGCGGTC
GGTGATCAGGCCCAGCGGCAGGCGCACCAGGGAGCCGGTGAGGATCGGCAGGGCGACCATCAGGCCGAACTG
GGATTCGCTCAGGCCGAGCTCGTCCTTGATGCGGATGCCGATGATCGAAAACATCGTCCACACGGCGAAATT
CACCGCGAAGGACAAGGTACTCATGCCGAGGACGGAGTACTGTTTCTGACGTAG
Translation:
MTHLDLLTRSVPGVTTLIRGCRGLLPTDSTGTLRTLARVPPPGGDDAAQVVGDEHVEGALGAAGHVQRGAER
LRDEEPAEGADGGGEADHRGRLHARVARRAGFVGLAVAHPPGPLVAEDHRDHAEGGTVADAGEEEQQDEGAK
EAEEVALAAVARQEGDHREHPADHQCVVPQGDPRAAELVRQPAAQGPAEGAHQRTEEGVLQRVDVGELGLAE
HREAGREADERAEGGHVQPAHQPVVLALEDHRLVAERGLGVGDVVHPEPGRDRYHGDERHPDPAGVLQPQAT
AVAELLRLAAEGAEQAAGHRQRHGELHHRDAEVAEPGIQAEGGALLALRIEEADVGHARGEVAAAEAAEQRD
QGEHPVRGARVLHGEAQPDARDQHRGGAQGGPATAAEDRHHERIEHPQGGAGDRRQRREQEQLVVAEGEAGA
VQAHGHRAPDHPHGEGEQQRGDRDPQVAAGDALAVARPELGVLGAPVEQQRSPCGFQLGIGDHAHDGITSGV
GGKGGRKVDVGRGGLAVDAALLLDRVVHPDHADHGQAEQQHEAGGAHADVVGGVAEQDRQAEAAEAADHPDH
AADGAHVARVVVVDDPVHAGLAEALGDADDEHQEGEQPDVQADTQAEVALDAVDGHGGLRVGEEEQAHQADP
EHAPIHRARAVVVAEPATEGADQAGRQGEQHGDEGRGLQVQAVFGDVVLRQPQGQGDEAAEDEEVVQAEAPD
AQLGERRQLLGQGRPLAGLGGTLEVRRIGPGEQPEQHGGDQHGHRVDLRHHAPAEGNHDHRRHQVGDRRAGV
AGAEDAHRGALALLLEPGRGVGDADREGAASQADEQAEHQVVPVLAGEGQAVDRDGHQQHVDEEHDAAAEAV
GDQAQRQAHQGAGEDRQGDHQAELGFAQAELVLDADADDRKHRPHGEIHREGQGTHAEDGVLFLT*
AnnotationID:6502GeneID:6501
AnnotatorUID: diggins
Modification Date/Time: 2005-04-25 09:09:04
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:16265
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:30105
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49503How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 3770323Stop: 3773112
Length: 2790
Start Codon: GTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGACTCATCTTGATCTCCTCACCCGGTCTGTGCCGGGCGTTACAACGCTAATCAGGGGTTGCCGCGGGCTG
CTGCCGACGGACTCAACAGGGACTCTCCGCACCCTTGCGCGCGTACCACCACCAGGTGGCGACGATGCAGCT
CAGGTAGTAGGCGATGAACACGTAGAGGGCGCCCTCGGCGCTGCCGGTCATGTGCAGCGAGGTGCCGAACGC
CTTCGGGATGAAGAACCCGCCGAAGGCGCCGATGGCGGCGGAGAAGCCGATCACCGCGGCCGACTCCATGCT
CGCGTTGCGCGCCGCGCCGGCTTCGTCGGCCTGGCCGTCGCGCACCCGCCGGGCCCACTCGTTGCGGAAGAT
CACCGGGATCATGCGGAAGGTGGAACCGTTGCCGATGCCGGCGAAGAAGAACAGCAGGATGAAGGCGCCAAG
GAAGCCGAAGAAGTTGCCCTGGCCGCCGTCGCCCGGCAGGAAGGCGATCACCGTGAACACCCCGCCGATCAT
CAGTGCGTAGTTCCACAGGGTGATCCGCGCGCCGCCGAACTTGTCCGCCAGCCAGCCGCCCAGGGGCCGGCT
GAGGGCGCCCACCAGCGGACCGAGGAAGGCGTATTGCAGCGGGTTGATGTCGGGGAACTGGGTCTTGCTGAG
CATCGCGAAGCCGGCCGAGAAGCCGATGAACGAGCCGAAGGTGGCCACGTACAGCCAGCACATCAGCCAGTT
GTGCTTGCGCTTGAAGATCACCGCCTGGTCGCGGAACGAGGCCTTGGCGTCGGCGATGTCGTTCATCCCGAA
CCAGGCCGCGACCGATACCACGGCGATGAACGGCACCCAGATCCAGCCGGCGTTCTGCAGCCACAGGCGACC
GCCGTCGCCGAGCTGCTGCGGCTCGCCGCCGAAGGCGCCGAACAGGCCGCCGGCCACCGCCAGCGGCACGGC
GAACTGCATCACCGAGACGCCGAGGTTGCCGAGCCCGGCATTCAGGCCGAGGGCGGTGCCCTGCTGGCTCTT
CGGATAGAAGAAGCTGATGTTGGACATGCTCGAGGCGAAGTTGCCGCCGCCGAAGCCGCAGAGCAGCGCGAT
CAGGGCGAACACCCAGTACGGGGTGCTCGGGTCCTGCACGGCGAAGCCCAGCCAGATGCACGGGATCAGCAT
CGAGGCGGTGCTCAGGGCGGTCCAGCGACGGCCGCCGAAGATCGGCACCATGAACGAATAGAACACCCGCAG
GGTGGCGCCGGAGATCGACGGCAGCGCCGCGAGCAGGAACAGCTGGTCGTTGCTGAAGGCGAAGCCGGCGCT
GTTCAGGCGCACGGTCACCGTGCTCCAGATCATCCACACGGCGAAGGCGAGCAGCAGCGCGGGGATCGAGAT
CCACAGGTTGCGGCTGGCGATGCGCTTGCCGTTGCGCGCCCAGAACTCGGGGTCCTCGGGGCGCCAGTCGAG
CAGCAGCGGTCCCCGTGCGGCTTTCAGTTGGGTATTGGCGATCATGCCCATGACGGCATTACCTCAGGAGTG
GGTGGGAAGGGTGGGAGGAAGGTCGACGTCGGCCGAGGCGGCCTGGCCGTCGATGCGGCGTTGCTGCTTGAT
CGCGTAGTGCATCCAGACCATGCAGACCACGGTCAGGCCGAACAGCAACATGAAGCAGGAGGAGCGCACGCC
GATGTGGTCGGCGGCGTAGCCGAACAGGATCGGCAGGCAGAAGCCGCCGAGGCCGCCGATCACCCCGACCAT
GCCGCCGACGGTGCCCATGTTGCTCGGGTAGTAGTCGTGGATGATCCGGTACACGCTGGCCTTGCCGAAGCC
CTGGGCGATGCCGACGACGAACACCAGGAAGGTGAACAGCCAGACGTTCAGGCCGATACCCAGGCTGAGGTC
GCCCTGGATGCCGTGGATGGTCATGGTGGTCTGCGGGTAGGAGAGGAAGAACAGGCACACCAGGCAGACCCA
GAACACGCCCCAATTCACCGAGCGCGCGCCGTAGTGGTCGCTGAACCAGCCACCGAGGGCGCGGATCAGGCC
GGACGGCAGGGTGAACAGCATGGTGATGAAGGACGCGGTCTTCAGGTCCAGGCCGTATTCGGCGATGTAGTA
CTTCGGCAGCCACAGGGCCAGGGCGACGAAGCCGCCGAAGACGAAGAAGTAGTACAGGCCGAAGCGCCAGAC
GCGCAGCTCGGCGAGCGGCGCCAGTTGCTTGGCCAGGGTCGGCCGCTGGCTGGCCTCGGCGGCACCCTTGAG
GTGCGCCGGATCGGTCCAGGTGAACAGCCAGAACAGCACGGCGGTGACCAGCATGGCCACCGAGTAGACCTG
CGGCACCATGCGCCAGCCGAAGGCAACCACGATCATCGGCGCCACCAGGTTGGTGATCGCCGCGCCGGCGTT
GCCGGCGCCGAAGATGCCCATCGCGGTGCCCTGGCGCTCCTTCTCGAACCAGGCCGAGGTGTAGGCGATGCC
GACCGCGAAGGAGCCGCCAGCCAGGCCGACGAACAGGCCGAGCACCAGGTAGTGCCAGTACTGGCTGGCGAA
GGCCAGGCCGTAGATCGGGATGGCCACCAGCAGCATGTGGATGAAGAACACGATGCGGCCGCCGAAGCGGTC
GGTGATCAGGCCCAGCGGCAGGCGCACCAGGGAGCCGGTGAGGATCGGCAGGGCGACCATCAGGCCGAACTG
GGATTCGCTCAGGCCGAGCTCGTCCTTGATGCGGATGCCGATGATCGAAAACATCGTCCACACGGCGAAATT
CACCGCGAAGGACAAGGTACTCATGCCGAGGACGGAGTACTGTTTCTGACGTAG