ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6493

TrivialName: PA14_13980

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_13980

PAO1 Ortholog Locus:

Sequence Length: 1746

Protein Length: 581

Start: 1199139

Stop: 1200884

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: emb|CAA55649.1| (X79027) unknown [Microbacterium ammoniaphilum] Identities = 110/337 (32%), Positives = 125/337 (37%), Gaps = 66/337 (19%)

Sequence:

ATGTATACTTTTTGGTCCAGATTGGACGAAAAGTATAAAGACGGATCACCGTCTGTTTCCCGCCCGGGCCGC
GGGCGCACCTTCGTCACCCCTGGAGTCGTCCATGATCAAGTCGCTGAACACCAAGAACCTGCTGGGAGGCCT
GCTGCTCGGCGTGCTCGCCAGCGGATCCGCCGTCGCCGCCGATGGCAACCTGCGGATCGGCATCGAGGCCGC
CTACCCGCCGTTTTCCTTCAAGACCGCCGAAGGCGAACTGGCCGGCTTCGACTACGACATCGGCAACGCACT
GTGCGCGCAGATGCAGGTGAAGTGCCAGTGGATCGAGCAGGAGTACGACGGCCTGATTCCCTCGCTGAAAGT
TCGCAAGATAGACGCCGCGCTGTCCTCCATCACCATCACCGAGGAGCGCCGGCGCTCGGTGGACTTCACCCA
CAAGTACTACTTCACGCCGGGCCGCCTGGTGATGAAGGAAGGCGCCCAGCTCGACGACAGCTTCAGCCAGTT
GGCCGGCAAGCGCATCGGCGTGCAGCGCGGCGCTACCGCCGACCGCTTCGCCAGTGCGGTGCTGGCCAAGGC
CGGTGCCGAAGTGGTGCGCTACACCAGCCAGGACGAGATCTACCTGGACCTGGTGGCCGGCCGCCTCGACGC
CACCTTCGCCGACTCCATCCCGTTGCAGACCGGCTTCCTCGATACCCCGCGCGGCAAGGGCTACGCCTTCGT
CGGGCCGGAGTTCAAGGACCCGAAATACTTCGGCGAGGGCGCTGGGATCGCGGTGCGCAAGGGGGACGCCGA
GCTGGTCGGCAAGCTCAACGCGGCGATCGACGCGATTCGTGCCGACGGGACCTACAAGCGCATCGAGGGCAA
GTACTTCAAGAGCGACATCTACGGCGACTGACCGCTCGCCGGCGGCGGCTGCCGTCAGTCGCCGCCTTCCTT
CAGCTCCTTGAGGTGCTTGTAGACCGTCGCCCGGCCCATGTTCAGCACGTTGGCCACATAGTTGGCGGCGCT
CTTGCCCTTGAACGCGCCCTCGGCGTGCAGGGCCAGGACCAGTTCGCGCTTGTGCTCGCGGGTCAGCAGGTT
CAAGCCGAGCTGGCGCTGCCGCAGCCAGCCGTGCAGGAAGGTGTTGATGCGCTCCTGCCAGTCGTCGCGGAA
CAGCGCGTCCGGTTGCGGGATCAGCTTGCTCGGCGAGAGGAACAGGTCGAGCGCCGCCTTGGCGCTCTCGAA
CAGGCTGATATTCAGGTTGATGCACAGCACCGCCAGCGGCTGGCCGGCGGCGTCGCGCAGCACGGTGCTGAC
CGAGCGGATCTTCTGCCCGTCCCAGTTGAGCTTCTCGTAGGGACCGATGTTGCGCTCGTCGCTATCGCCTTC
GAGCATGTCTTCCAGCGCCGAGTCGTCGCCGACCTCGCGCTTGGACAGGTTGTTGGCGATGTAGTCGACCCG
CTGGCTGCGCAGGTCGTGCAGGACCACTTCGGCGTGGGGGAAGAACAGGGTGGCGATGCCGTCGGCGATCGC
CCGGTAGTTCTCCAGGCTGGGGTCTTGGCTCGGGCTCATGCGCAGGAACTCTCGTGGGACGGCGGGCGAGGC
GAGTGTGCCGCAAACCCGCCGCCGGGTCATCAGGGAGACAGGCGGCGCGGCGACAGCATCGCCTCGTCCAGG
CCGTGCTCGCGCAGGTGCGCCGGCAGCGGCTGGTGGCGGATCAGCGCGGCGCTGGCCTCGCCCATCGCCGCC
GAGGTCTGGATACCGTAG

Translation:

MYTFWSRLDEKYKDGSPSVSRPGRGRTFVTPGVVHDQVAEHQEPAGRPAARRARQRIRRRRRWQPADRHRGR
LPAVFLQDRRRRTGRLRLRHRQRTVRADAGEVPVDRAGVRRPDSLAESSQDRRRAVLHHHHRGAPALGGLHP
QVLLHAGPPGDEGRRPARRQLQPVGRQAHRRAARRYRRPLRQCGAGQGRCRSGALHQPGRDLPGPGGRPPRR
HLRRLHPVADRLPRYPARQGLRLRRAGVQGPEILRRGRWDRGAQGGRRAGRQAQRGDRRDSCRRDLQAHRGQ
VLQERHLRRLTARRRRLPSVAAFLQLLEVLVDRRPAHVQHVGHIVGGALALERALGVQGQDQFALVLAGQQV
QAELALPQPAVQEGVDALLPVVAEQRVRLRDQLARREEQVERRLGALEQADIQVDAQHRQRLAGGVAQHGAD
RADLLPVPVELLVGTDVALVAIAFEHVFQRRVVADLALGQVVGDVVDPLAAQVVQDHFGVGEEQGGDAVGDR
PVVLQAGVLARAHAQELSWDGGRGECAANPPPGHQGDRRRGDSIASSRPCSRRCAGSGWWRISAALASPIAA
EVWIP*

AnnotationID:6494 GeneID:6493

AnnotatorUID: diggins

Modification Date/Time: 2004-04-13 14:02:36

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

no data found via CDD Search

Genomic Context:

Comment:

ReferenceID:12785

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30090

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:31699

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6493_cdd.html

URL:

GC ORFID: `49495`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `3754799`	Stop: `3753054`
Length: `1746`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGTATACTTTTTGGTCCAGATTGGACGAAAAGTATAAAGACGGATCACCGTCTGTTTCCCGCCCGGGCCGC GGGCGCACCTTCGTCACCCCTGGAGTCGTCCATGATCAAGTCGCTGAACACCAAGAACCTGCTGGGAGGCCT GCTGCTCGGCGTGCTCGCCAGCGGATCCGCCGTCGCCGCCGATGGCAACCTGCGGATCGGCATCGAGGCCGC CTACCCGCCGTTTTCCTTCAAGACCGCCGAAGGCGAACTGGCCGGCTTCGACTACGACATCGGCAACGCACT GTGCGCGCAGATGCAGGTGAAGTGCCAGTGGATCGAGCAGGAGTACGACGGCCTGATTCCCTCGCTGAAAGT TCGCAAGATAGACGCCGCGCTGTCCTCCATCACCATCACCGAGGAGCGCCGGCGCTCGGTGGACTTCACCCA CAAGTACTACTTCACGCCGGGCCGCCTGGTGATGAAGGAAGGCGCCCAGCTCGACGACAGCTTCAGCCAGTT GGCCGGCAAGCGCATCGGCGTGCAGCGCGGCGCTACCGCCGACCGCTTCGCCAGTGCGGTGCTGGCCAAGGC CGGTGCCGAAGTGGTGCGCTACACCAGCCAGGACGAGATCTACCTGGACCTGGTGGCCGGCCGCCTCGACGC CACCTTCGCCGACTCCATCCCGTTGCAGACCGGCTTCCTCGATACCCCGCGCGGCAAGGGCTACGCCTTCGT CGGGCCGGAGTTCAAGGACCCGAAATACTTCGGCGAGGGCGCTGGGATCGCGGTGCGCAAGGGGGACGCCGA GCTGGTCGGCAAGCTCAACGCGGCGATCGACGCGATTCGTGCCGACGGGACCTACAAGCGCATCGAGGGCAA GTACTTCAAGAGCGACATCTACGGCGACTGACCGCTCGCCGGCGGCGGCTGCCGTCAGTCGCCGCCTTCCTT CAGCTCCTTGAGGTGCTTGTAGACCGTCGCCCGGCCCATGTTCAGCACGTTGGCCACATAGTTGGCGGCGCT CTTGCCCTTGAACGCGCCCTCGGCGTGCAGGGCCAGGACCAGTTCGCGCTTGTGCTCGCGGGTCAGCAGGTT CAAGCCGAGCTGGCGCTGCCGCAGCCAGCCGTGCAGGAAGGTGTTGATGCGCTCCTGCCAGTCGTCGCGGAA CAGCGCGTCCGGTTGCGGGATCAGCTTGCTCGGCGAGAGGAACAGGTCGAGCGCCGCCTTGGCGCTCTCGAA CAGGCTGATATTCAGGTTGATGCACAGCACCGCCAGCGGCTGGCCGGCGGCGTCGCGCAGCACGGTGCTGAC CGAGCGGATCTTCTGCCCGTCCCAGTTGAGCTTCTCGTAGGGACCGATGTTGCGCTCGTCGCTATCGCCTTC GAGCATGTCTTCCAGCGCCGAGTCGTCGCCGACCTCGCGCTTGGACAGGTTGTTGGCGATGTAGTCGACCCG CTGGCTGCGCAGGTCGTGCAGGACCACTTCGGCGTGGGGGAAGAACAGGGTGGCGATGCCGTCGGCGATCGC CCGGTAGTTCTCCAGGCTGGGGTCTTGGCTCGGGCTCATGCGCAGGAACTCTCGTGGGACGGCGGGCGAGGC GAGTGTGCCGCAAACCCGCCGCCGGGTCATCAGGGAGACAGGCGGCGCGGCGACAGCATCGCCTCGTCCAGG CCGTGCTCGCGCAGGTGCGCCGGCAGCGGCTGGTGGCGGATCAGCGCGGCGCTGGCCTCGCCCATCGCCGCC GAGGTCTGGATACCGTAG