ViewGene
Locus Name:
GeneID:
Location:

GeneID:6484
TrivialName: PA14_14260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14260
PAO1 Ortholog Locus:
Sequence Length:924
Protein Length:307
Start: 1218647
Stop: 1217724
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD65059.1| (AL935260) extracellular protein [Lactobacillus plantarum WCFS1]
Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 1/171 (0%)
Sequence:
GTGCCAGCGTGCCGGCGTGGCGGAACCGCAGCACGGACTGCTGATCAACGACTCGAACCTGCTGCTGGAAGC
CGTGCGCCTGGGCCAGGGCATCGCCCTGGAGCGTCGCAGCCTGGTCGCCGGCGCCCTCGCCGAGGGCCGCCT
GGTGCAACTGGGCGACATCCGCGTGCCCTACCCCTATCCCTACTGGCTGGTCTGGCCGCAGCGCGAGCCGCC
GAGCGACCGCCACCAGGCCTTCGCCGACTGGCTGCGCGAGGAGGCCCGGCGCTACCAGGCCGAGCAACCGCC
GCTCAGCGAATGAAGTTGCGGCTGATCTCGCGGAAGCGGTCGCTGCCGGCGCGTTCCATCCATTCGAAGGCG
ACCATCTCCCGCGACACGATCATCGCCCCGGCCTGGCGCATCCGCTCCACGGCCAGCGCCTTGTCGCTCGGC
CGCCGCGAGCCGATCGCCTCCTCCACGACGAACACTTCGCGACCACGGCCAAGCAGGTCGAGCACGGTCTGC
AGCACGCAGACATGCGCCTCGCTGCCGCAAACCACGAACTGCCGGCGGTCGCCGCCGGGCGCGCGCAGCAGG
GCGCCGTCGGCGGCGGCCGAGAAGTCCAGCTTCTCGAGGATCTGCGTGGCGTCCAGCTCATCGCGCAGGGCC
GCCACCGTCGGCCCCAGGCCCTTGCTGTACTGCTCGCTGGCCAGCACCGGCACGTCCAGTGCGCGGGCCACG
CGCAACAACCACTGGCTGTACTCGACCAGCGCCGGGCCGTCGTCGATGGCCGGCAGCAGGCGTTCCTGGATA
TCGACCACCAGCAGGGTCGAGGTTGCGGCGCGGATTAGCATGGCGTCCTCCTTCGGTTCGACGTCTCGGTTC
GTCTGGCTTAGGCTTGCACGGCACGGGCGCCATGGACAGCGCGTCCTCCCACAACCCTAG
Translation:
MPACRRGGTAARTADQRLEPAAGSRAPGPGHRPGASQPGRRRPRRGPPGATGRHPRALPLSLLAGLAAARAA
ERPPPGLRRLAARGGPALPGRATAAQRMKLRLISRKRSLPARSIHSKATISRDTIIAPAWRIRSTASALSLG
RREPIASSTTNTSRPRPSRSSTVCSTQTCASLPQTTNCRRSPPGARSRAPSAAAEKSSFSRICVASSSSRRA
ATVGPRPLLYCSLASTGTSSARATRNNHWLYSTSAGPSSMAGSRRSWISTTSRVEVAARISMASSFGSTSRF
VWLRLARHGRHGQRVLPQP*
AnnotationID:6485GeneID:6484
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 22:10:10
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:16247




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30072




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49486How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3735291Stop: 3736214

          
Length: 924


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGCCAGCGTGCCGGCGTGGCGGAACCGCAGCACGGACTGCTGATCAACGACTCGAACCTGCTGCTGGAAGC 
CGTGCGCCTGGGCCAGGGCATCGCCCTGGAGCGTCGCAGCCTGGTCGCCGGCGCCCTCGCCGAGGGCCGCCT 
GGTGCAACTGGGCGACATCCGCGTGCCCTACCCCTATCCCTACTGGCTGGTCTGGCCGCAGCGCGAGCCGCC 
GAGCGACCGCCACCAGGCCTTCGCCGACTGGCTGCGCGAGGAGGCCCGGCGCTACCAGGCCGAGCAACCGCC 
GCTCAGCGAATGAAGTTGCGGCTGATCTCGCGGAAGCGGTCGCTGCCGGCGCGTTCCATCCATTCGAAGGCG 
ACCATCTCCCGCGACACGATCATCGCCCCGGCCTGGCGCATCCGCTCCACGGCCAGCGCCTTGTCGCTCGGC 
CGCCGCGAGCCGATCGCCTCCTCCACGACGAACACTTCGCGACCACGGCCAAGCAGGTCGAGCACGGTCTGC 
AGCACGCAGACATGCGCCTCGCTGCCGCAAACCACGAACTGCCGGCGGTCGCCGCCGGGCGCGCGCAGCAGG 
GCGCCGTCGGCGGCGGCCGAGAAGTCCAGCTTCTCGAGGATCTGCGTGGCGTCCAGCTCATCGCGCAGGGCC 
GCCACCGTCGGCCCCAGGCCCTTGCTGTACTGCTCGCTGGCCAGCACCGGCACGTCCAGTGCGCGGGCCACG 
CGCAACAACCACTGGCTGTACTCGACCAGCGCCGGGCCGTCGTCGATGGCCGGCAGCAGGCGTTCCTGGATA 
TCGACCACCAGCAGGGTCGAGGTTGCGGCGCGGATTAGCATGGCGTCCTCCTTCGGTTCGACGTCTCGGTTC 
GTCTGGCTTAGGCTTGCACGGCACGGGCGCCATGGACAGCGCGTCCTCCCACAACCCTAG