ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6480

TrivialName: PA14_14350

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_14350

PAO1 Ortholog Locus:

Sequence Length: 1608

Protein Length: 535

Start: 1224021

Stop: 1225628

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAM37943.1| (AE011953) PilL protein [Xanthomonas axonopodis pv. citri str. 306] Identities = 118/465 (25%), Positives = 156/465 (33%), Gaps = 118/465 (25%)

Sequence:

ATGGTCTCGGTTTCCGTGACGGCGAGGCGGGCATTATTCACATCCGCCGGAGGCTGGCCAGTGTTTCTGCCG
AGCGGCGCGCTCCTGGCCCGGTCACAATGGAAACAGCCACGGAATCACCAGCACGCAGACGAACATCACCAG
CAGGGTAAATGGCACGCCGATCCGGACGAAGTCGCCGAAGCGGTATTGGCCAGGGCCCAGCACCAGGGTGTT
CACCGGCGAGGAAATCGGCGTCATGAAGGCTGCCGAGGCCGCCACCGCCACCACCATGGCGAAGGGGTAGGG
CGAGGCGCCGATCTGGTTGGCGGTGGCGATGGCGATCGGCGCCATCAGCACCGCGGTAGCGGTGTTGGAGAT
GAACAGGCCGATGGCCGCGGTGAGCAGGAACAGGCTGGCCAGCAGCACGCGCGGGCCGGCGTCGCCGAGGGC
GTCGACCAGCAGCGAGACCACCAGGTCGATACCGCCGGTCTTCTGCAGGGCCAGGGCGAAGGGCAGCATGCC
GACGATCAGGACCAGGCTTTGCCAATGGATGGCGCGGTAGGCGCCGTCCATGTCGATGCAACGGAACAGGCC
CATCAACAGGCAGCCGACCAGTGCCGCGACCACGTTGGGCACCACCCCGCTGACCATCAGCGCCACCATCAC
GGCCAGGCTGAGCAGGGCGTGCGGCGCCTTGCTCAGGGCCGGCGCCACCTCGTCGATCTCCGCCGGCAGGCT
GAGCACCAGGAAATCGCGGTTGCGTCCCTGCAACTGGCGGATCGCCTTCCAGGCGCCGATCACCAGCAGGGT
ATCGCCCAGGCGCAGCTTCTCTTCCAGCATGCCGTCGGTGAGCGCTTCGTGGTCGCGACGCAGGCCGACCAC
GTTGAGCCCGTACTGCGAACGGAAGCCCAGCTCCAGGACGCTCTTGCCGAGCAGGGTGGAGTCCGGCGGCAG
AGTCACCTCGGCCATGCCGACCTCCCGCGACTGGTCGATGAAGTAGCTGGCGCGGAACGGCAGGCGCACCAG
GTTCAGCTCGGCGCAGCGCCGGTCCATGTCCTCCGGAGGGGCGAAGACGTCCAGCAGCAACACGTCGCCCGC
CTTCAGCTCGGTGCTGCCGCCGACCTTGACCACCTCGCTGTGGAACTTGCGCACCCGCTCCAGGCCGACCAC
GTTGGCGCCCAGGCGGGTGCGCAGTTGCAGTTCTTCCAGGGTGCTGCCGATCAACGGCGAGCCGAGCTGGAC
CTGCAGGCGCCGCTCGCGGCCGGCCAGGCGATAGTCGCGGATCAGGTCGCGCAGGGTCCGCCGTGCCTTCGG
CGCGCCGACTTCCGCCGGGCTGGCGGCGTTCAGCCAGTTGCGCGTGAGCAGCATGTAGGCCACGCCGATGGC
GAGCACCATCAGGCCTATCGGGGTGAAGGCGAAGAAGCCGAAGCCGGCATGACCCTCGCGCGCCAGCTCGCT
GTTGACCACCATGTTCGGCGGTGTGGCGACCAGGGTCATCATGCCGCTGATCAGTCCGGCGAAGGCCAGCGG
CATCATCAGCCGGCCCGGAGGGATCTTCAGCTTGGCGGCGATGCTCAGGACCACCGGGATGAAGATCGCCAC
CACCCCGGTGGAACTCATCACTGA

Translation:

MVSVSVTARRALFTSAGGWPVFLPSGALLARSQWKQPRNHQHADEHHQQGKWHADPDEVAEAVLARAQHQGV
HRRGNRRHEGCRGRHRHHHGEGVGRGADLVGGGDGDRRHQHRGSGVGDEQADGRGEQEQAGQQHARAGVAEG
VDQQRDHQVDTAGLLQGQGEGQHADDQDQALPMDGAVGAVHVDATEQAHQQAADQCRDHVGHHPADHQRHHH
GQAEQGVRRLAQGRRHLVDLRRQAEHQEIAVASLQLADRLPGADHQQGIAQAQLLFQHAVGERFVVATQADH
VEPVLRTEAQLQDALAEQGGVRRQSHLGHADLPRLVDEVAGAERQAHQVQLGAAPVHVLRRGEDVQQQHVAR
LQLGAAADLDHLAVELAHPLQADHVGAQAGAQLQFFQGAADQRRAELDLQAPLAAGQAIVADQVAQGPPCLR
RADFRRAGGVQPVAREQHVGHADGEHHQAYRGEGEEAEAGMTLARQLAVDHHVRRCGDQGHHAADQSGEGQR
HHQPARRDLQLGGDAQDHRDEDRHHPGGTHH*

AnnotationID:6481 GeneID:6480

AnnotatorUID: diggins

Modification Date/Time: 2004-04-13 20:08:50

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:12760

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30064

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:31718

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6480_cdd.html

URL:

GC ORFID: `49482`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `3729917`	Stop: `3728310`
Length: `1608`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGTCTCGGTTTCCGTGACGGCGAGGCGGGCATTATTCACATCCGCCGGAGGCTGGCCAGTGTTTCTGCCG AGCGGCGCGCTCCTGGCCCGGTCACAATGGAAACAGCCACGGAATCACCAGCACGCAGACGAACATCACCAG CAGGGTAAATGGCACGCCGATCCGGACGAAGTCGCCGAAGCGGTATTGGCCAGGGCCCAGCACCAGGGTGTT CACCGGCGAGGAAATCGGCGTCATGAAGGCTGCCGAGGCCGCCACCGCCACCACCATGGCGAAGGGGTAGGG CGAGGCGCCGATCTGGTTGGCGGTGGCGATGGCGATCGGCGCCATCAGCACCGCGGTAGCGGTGTTGGAGAT GAACAGGCCGATGGCCGCGGTGAGCAGGAACAGGCTGGCCAGCAGCACGCGCGGGCCGGCGTCGCCGAGGGC GTCGACCAGCAGCGAGACCACCAGGTCGATACCGCCGGTCTTCTGCAGGGCCAGGGCGAAGGGCAGCATGCC GACGATCAGGACCAGGCTTTGCCAATGGATGGCGCGGTAGGCGCCGTCCATGTCGATGCAACGGAACAGGCC CATCAACAGGCAGCCGACCAGTGCCGCGACCACGTTGGGCACCACCCCGCTGACCATCAGCGCCACCATCAC GGCCAGGCTGAGCAGGGCGTGCGGCGCCTTGCTCAGGGCCGGCGCCACCTCGTCGATCTCCGCCGGCAGGCT GAGCACCAGGAAATCGCGGTTGCGTCCCTGCAACTGGCGGATCGCCTTCCAGGCGCCGATCACCAGCAGGGT ATCGCCCAGGCGCAGCTTCTCTTCCAGCATGCCGTCGGTGAGCGCTTCGTGGTCGCGACGCAGGCCGACCAC GTTGAGCCCGTACTGCGAACGGAAGCCCAGCTCCAGGACGCTCTTGCCGAGCAGGGTGGAGTCCGGCGGCAG AGTCACCTCGGCCATGCCGACCTCCCGCGACTGGTCGATGAAGTAGCTGGCGCGGAACGGCAGGCGCACCAG GTTCAGCTCGGCGCAGCGCCGGTCCATGTCCTCCGGAGGGGCGAAGACGTCCAGCAGCAACACGTCGCCCGC CTTCAGCTCGGTGCTGCCGCCGACCTTGACCACCTCGCTGTGGAACTTGCGCACCCGCTCCAGGCCGACCAC GTTGGCGCCCAGGCGGGTGCGCAGTTGCAGTTCTTCCAGGGTGCTGCCGATCAACGGCGAGCCGAGCTGGAC CTGCAGGCGCCGCTCGCGGCCGGCCAGGCGATAGTCGCGGATCAGGTCGCGCAGGGTCCGCCGTGCCTTCGG CGCGCCGACTTCCGCCGGGCTGGCGGCGTTCAGCCAGTTGCGCGTGAGCAGCATGTAGGCCACGCCGATGGC GAGCACCATCAGGCCTATCGGGGTGAAGGCGAAGAAGCCGAAGCCGGCATGACCCTCGCGCGCCAGCTCGCT GTTGACCACCATGTTCGGCGGTGTGGCGACCAGGGTCATCATGCCGCTGATCAGTCCGGCGAAGGCCAGCGG CATCATCAGCCGGCCCGGAGGGATCTTCAGCTTGGCGGCGATGCTCAGGACCACCGGGATGAAGATCGCCAC CACCCCGGTGGAACTCATCACTGA