ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6471

TrivialName: PA14_14840

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_14840

PAO1 Ortholog Locus:

Sequence Length: 1755

Protein Length: 584

Start: 1261992

Stop: 1260238

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAN63644.1|AF440828_7 (AF440828) unknown [Streptomyces avermitilis] Identities = 62/194 (31%), Positives = 74/194 (38%), Gaps = 39/194 (20%)

Sequence:

GTGGCTACGACTTCGGGCTGCGGCGCTTTCATCATTTTTCCGCCTGGAATTCCTGATATTCGGGAGAGCCTG
GGTACAGGCGTTTCAACTGCAGGCCATAGCTGGCGGCCGTGTCGCGGTCCTCGAAGACCTTCGCGAGACGAA
TGCCCAGCAACAGGCTGCGGGCGTTCTGCCCGCCGCCCTGGGCAAAGAGATCATAGTACTGGCGAGCCGGCA
CGTACTCGCGCTCCTTGTAGAGCAGGTCGGCCATCTCCAGCGCGACGCTGGGCTGGTTACGGTTCAGACGCA
GGGATTTCTCGAAGTACTCCTTGGCCTGGGCCGGTTTCTTCATTTGCAGCGAAACCAGGCCGAGGTTCTCGA
AGACCCGCGAGCGCTCGGGATAGAGGGTGTCCTGGCTGGCCTCCAGGAGACGCTGGTAGGCCTCCTCGTAGC
GCTTCTGCTCGTAGAGGAAACCGCCGTAGTTGTTCAGTACCCGGGCATTGCGGCTATCGCTGGCGAGCGCCT
TGCGGTACTCCTCGTCGGCCAGCTTGGGCTCCATCTCGGTCTGGAACACCACCGCCAGCGCGGCATGCGCGT
CGGCGCTGGAAGGGTCGATCTCGAGGGCCTTGCGCAGCGGCACCTTGGCCTGCTCGGTGTTCCCCCGCTGGA
GATAGCCGAGGCCGAGCTGGATATAGGCATCGCGCGCCTCGTCACGGCCCTTGTCGGTTTTCAGGGGATTCT
GATCTCCGCTCGTCACGCAGCCTGTCAGCCCAACTGCCAACAGGAACACCAGCGCGGCGCGTACAGTCATCG
GAACCCTCCTCTCACTCAATTTCGATTCGCCGCCGACTCGGACTCGGCCAGTTGGCGCACGGCAATATAACG
TTCGCTCCGGCGGGTACGATCCATGACCTGGCCGACCAGCTGGCCACAGGCTGCGTCGATGTCGTCGCCGCG
GGTGGTACGCACGGTCACGTTGAAGCCGCCCTTGTGCAACATGTCCTGGAAACGCCGGATGGCATTGTTGCT
CGGGCGCTCGTAGCCGGAGTGCGGGAATGGATTAAACGGAATCAGGTTGATCTTGCAAGGCGTGTCTTTCAG
CAATGCGATCATCTGCTCAGCATGCTCGGGCTGATCGTTGACATCCTTGAGCAGGGTGTACTCGACGGTCAG
CACGCGCTTCTCGCCGAGCCGGGAAATATACCGGCGGCAGGCATCCAGCAGCATGCCCAGCGGATACTTCTT
GTTGATCGGCACCAGCTTGTTGCGCAACTCGTCGTTCGGTGCGTGCAGCGACAGGGCCAGGGACACGTCGAT
CACCTCGCCGAGCTTGTCGATCATCGGCACCACGCCGGAGGTGGACAGGGTCACCTTGCGCTTGGAAATACC
GTAGCCGAGGTCGTCCATCATGATGTTCATGGCGGCGACCACGTTGTCGAAGTTCAGCAGCGGCTCGCCCAT
GCCCATCATCACGACATTGGTGATGGCGCGGTCGATCTTGGCCGGAACGGTACCGAACGACTTGTTGGCGAT
CCACACCTGGCCGATCACCTCGGCGGCGGTGAGGTCGCTGTTGAAACCCTGCTTGCCGGTGGAGCAGAAACT
GCAATCCAGGGCGCAGCCCGCCTGGGAGGACACGCACAGGGTGCCGCGTCCGCCCTGGGGGATGTACACGGT
CTCGACGCAACTGCCGGACGCCACCCGGACCACCCACTTGCGGGTGCCGTCGGCGGAGATGTCCTGGCTGAC
GATCTCGGGACCGCGTATCTCGGCTGA

Translation:

MATTSGCGAFIIFPPGIPDIRESLGTGVSTAGHSWRPCRGPRRPSRDECPATGCGRSARRPGQRDHSTGEPA
RTRAPCRAGRPSPARRWAGYGSDAGISRSTPWPGPVSSFAAKPGRGSRRPASARDRGCPGWPPGDAGRPPRS
ASARRGNRRSCSVPGHCGYRWRAPCGTPRRPAWAPSRSGTPPPARHARRRWKGRSRGPCAAAPWPARCSPAG
DSRGRAGYRHRAPRHGPCRFSGDSDLRSSRSLSAQLPTGTPARRVQSSEPSSHSISIRRRLGLGQLAHGNIT
FAPAGTIHDLADQLATGCVDVVAAGGTHGHVEAALVQHVLETPDGIVARALVAGVREWIKRNQVDLARRVFQ
QCDHLLSMLGLIVDILEQGVLDGQHALLAEPGNIPAAGIQQHAQRILLVDRHQLVAQLVVRCVQRQGQGHVD
HLAELVDHRHHAGGGQGHLALGNTVAEVVHHDVHGGDHVVEVQQRLAHAHHHDIGDGAVDLGRNGTERLVGD
PHLADHLGGGEVAVETLLAGGAETAIQGAARLGGHAQGAASALGDVHGLDATAGRHPDHPLAGAVGGDVLAD
DLGTAYLG*

AnnotationID:6472 GeneID:6471

AnnotatorUID: diggins

Modification Date/Time: 2004-04-20 12:12:41

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16237

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30047

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:31752

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6471_cdd.html

URL:

GC ORFID: `49473`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `3691946`	Stop: `3693700`
Length: `1755`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGGCTACGACTTCGGGCTGCGGCGCTTTCATCATTTTTCCGCCTGGAATTCCTGATATTCGGGAGAGCCTG GGTACAGGCGTTTCAACTGCAGGCCATAGCTGGCGGCCGTGTCGCGGTCCTCGAAGACCTTCGCGAGACGAA TGCCCAGCAACAGGCTGCGGGCGTTCTGCCCGCCGCCCTGGGCAAAGAGATCATAGTACTGGCGAGCCGGCA CGTACTCGCGCTCCTTGTAGAGCAGGTCGGCCATCTCCAGCGCGACGCTGGGCTGGTTACGGTTCAGACGCA GGGATTTCTCGAAGTACTCCTTGGCCTGGGCCGGTTTCTTCATTTGCAGCGAAACCAGGCCGAGGTTCTCGA AGACCCGCGAGCGCTCGGGATAGAGGGTGTCCTGGCTGGCCTCCAGGAGACGCTGGTAGGCCTCCTCGTAGC GCTTCTGCTCGTAGAGGAAACCGCCGTAGTTGTTCAGTACCCGGGCATTGCGGCTATCGCTGGCGAGCGCCT TGCGGTACTCCTCGTCGGCCAGCTTGGGCTCCATCTCGGTCTGGAACACCACCGCCAGCGCGGCATGCGCGT CGGCGCTGGAAGGGTCGATCTCGAGGGCCTTGCGCAGCGGCACCTTGGCCTGCTCGGTGTTCCCCCGCTGGA GATAGCCGAGGCCGAGCTGGATATAGGCATCGCGCGCCTCGTCACGGCCCTTGTCGGTTTTCAGGGGATTCT GATCTCCGCTCGTCACGCAGCCTGTCAGCCCAACTGCCAACAGGAACACCAGCGCGGCGCGTACAGTCATCG GAACCCTCCTCTCACTCAATTTCGATTCGCCGCCGACTCGGACTCGGCCAGTTGGCGCACGGCAATATAACG TTCGCTCCGGCGGGTACGATCCATGACCTGGCCGACCAGCTGGCCACAGGCTGCGTCGATGTCGTCGCCGCG GGTGGTACGCACGGTCACGTTGAAGCCGCCCTTGTGCAACATGTCCTGGAAACGCCGGATGGCATTGTTGCT CGGGCGCTCGTAGCCGGAGTGCGGGAATGGATTAAACGGAATCAGGTTGATCTTGCAAGGCGTGTCTTTCAG CAATGCGATCATCTGCTCAGCATGCTCGGGCTGATCGTTGACATCCTTGAGCAGGGTGTACTCGACGGTCAG CACGCGCTTCTCGCCGAGCCGGGAAATATACCGGCGGCAGGCATCCAGCAGCATGCCCAGCGGATACTTCTT GTTGATCGGCACCAGCTTGTTGCGCAACTCGTCGTTCGGTGCGTGCAGCGACAGGGCCAGGGACACGTCGAT CACCTCGCCGAGCTTGTCGATCATCGGCACCACGCCGGAGGTGGACAGGGTCACCTTGCGCTTGGAAATACC GTAGCCGAGGTCGTCCATCATGATGTTCATGGCGGCGACCACGTTGTCGAAGTTCAGCAGCGGCTCGCCCAT GCCCATCATCACGACATTGGTGATGGCGCGGTCGATCTTGGCCGGAACGGTACCGAACGACTTGTTGGCGAT CCACACCTGGCCGATCACCTCGGCGGCGGTGAGGTCGCTGTTGAAACCCTGCTTGCCGGTGGAGCAGAAACT GCAATCCAGGGCGCAGCCCGCCTGGGAGGACACGCACAGGGTGCCGCGTCCGCCCTGGGGGATGTACACGGT CTCGACGCAACTGCCGGACGCCACCCGGACCACCCACTTGCGGGTGCCGTCGGCGGAGATGTCCTGGCTGAC GATCTCGGGACCGCGTATCTCGGCTGA