ViewGene
Locus Name:
GeneID:
Location:

GeneID:6468
TrivialName: PA14_14950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14950
PAO1 Ortholog Locus:
Sequence Length:1125
Protein Length:374
Start: 1271334
Stop: 1270210
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO54546.1| (AE016859) tonB domain protein [Pseudomonas syringae pv. tomato str. DC3000]
Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 19/156 (12%)
Sequence:
ATGCTGCCCAGCGAACCGAGCAGACCACCGCCATCGCCACCGCCCTGTGCCGCACCGCCCTGGCGCGACATC
AGCATGGTCACCAGCCCGATCAACAGGGCCACTTTCGGATCGCGAGCACCTCCCTGTCCTTCAGAGCCACCC
AGCGCCGAACCGAGAATCGAATCGAGCAGTCCCATTGGCCTTCCTCCTGATCTGATGCCCACGGCGCGGCGC
CGCGGGATACGGGTAACTCCATTCCCGGCACTGCGCCATCATGCGCAGCGCCGGGTCATGGCCTCGGACATC
GACCGGAAGCGGACGTTCCGGCACTCAAGGATGGATTTCGAAGCGATCCGCGTCCATGTAGGCCGGGAAACG
CTGGCGATAGGCCGCCAGTGCCGCCGCGTCCAGCCGGACGCGGAACACGCCGTCGGCGTCCGCCGCGTTGAA
CAGGCTGTCGCCCTGGAAGTCCAGGACCTGGCTATCCCCAGCGTAGCGCAAGGCGTTGCCGTCTTCGCCGAT
ACGGTTCACCGCCACCACGTAGCAAAGGTTCTCGATCGCCCGCGCCGGCAGCAGGCGGTTCCAGTGCTGTCG
ACGAGGCGCGGGCCAGTTGGCGGTGTAGAGCAACAGGTCGGTGTCGTGCGGGTCGCGGCTCCACACCGGGAA
ACGCAGGTCGTAGCAGATCAACGGGCGCACCCGCCAGCCCTTGAGTTCGAACAGTTCCTGGCGTTCGCCGGG
ACTGTAGTGCTCGTGTTCGCCGGCCATGCGGAACAGATGGCGCTTGTCGTAGTGCAGCATCTCGCCGTCCGG
GCGCGCCCAGAGCAGGCGATTGCGATGGCTACCGTCGGCGAGCTGGACGATCAGGCTGCCGGTGACCACCGC
ACCAAGGCGCCGGGCCTGCTCCAGCAGCCAGGCATGGGTCGGCCCCAGCTCGGGCTCGGCCTGCTCGGCCGA
AGCCATGCTGAAACCCGTGGTGAACATCTCCGGGAGGACCACCAGGTCGGCGCCGGCGGCGCTCTCCAGCAG
GGCGGCGAAATGCTCGCGGTTGGCCTGGGCGTCGTGCCAGGCCAGGGAGGATTGGACCAGGGCGATGTCCAG
GTCCGGCAGAACCGTCAGATCGCGCATAGCTTTTCCGCTGCCTGA
Translation:
MLPSEPSRPPPSPPPCAAPPWRDISMVTSPINRATFGSRAPPCPSEPPSAEPRIESSSPIGLPPDLMPTARR
RGIRVTPFPALRHHAQRRVMASDIDRKRTFRHSRMDFEAIRVHVGRETLAIGRQCRRVQPDAEHAVGVRRVE
QAVALEVQDLAIPSVAQGVAVFADTVHRHHVAKVLDRPRRQQAVPVLSTRRGPVGGVEQQVGVVRVAAPHRE
TQVVADQRAHPPALEFEQFLAFAGTVVLVFAGHAEQMALVVVQHLAVRARPEQAIAMATVGELDDQAAGDHR
TKAPGLLQQPGMGRPQLGLGLLGRSHAETRGEHLREDHQVGAGGALQQGGEMLAVGLGVVPGQGGLDQGDVQ
VRQNRQIAHSFSAA*
AnnotationID:6469GeneID:6468
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 10:10:50
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:12742




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30041




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49470How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3682604Stop: 3683728

          
Length: 1125


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCTGCCCAGCGAACCGAGCAGACCACCGCCATCGCCACCGCCCTGTGCCGCACCGCCCTGGCGCGACATC 
AGCATGGTCACCAGCCCGATCAACAGGGCCACTTTCGGATCGCGAGCACCTCCCTGTCCTTCAGAGCCACCC 
AGCGCCGAACCGAGAATCGAATCGAGCAGTCCCATTGGCCTTCCTCCTGATCTGATGCCCACGGCGCGGCGC 
CGCGGGATACGGGTAACTCCATTCCCGGCACTGCGCCATCATGCGCAGCGCCGGGTCATGGCCTCGGACATC 
GACCGGAAGCGGACGTTCCGGCACTCAAGGATGGATTTCGAAGCGATCCGCGTCCATGTAGGCCGGGAAACG 
CTGGCGATAGGCCGCCAGTGCCGCCGCGTCCAGCCGGACGCGGAACACGCCGTCGGCGTCCGCCGCGTTGAA 
CAGGCTGTCGCCCTGGAAGTCCAGGACCTGGCTATCCCCAGCGTAGCGCAAGGCGTTGCCGTCTTCGCCGAT 
ACGGTTCACCGCCACCACGTAGCAAAGGTTCTCGATCGCCCGCGCCGGCAGCAGGCGGTTCCAGTGCTGTCG 
ACGAGGCGCGGGCCAGTTGGCGGTGTAGAGCAACAGGTCGGTGTCGTGCGGGTCGCGGCTCCACACCGGGAA 
ACGCAGGTCGTAGCAGATCAACGGGCGCACCCGCCAGCCCTTGAGTTCGAACAGTTCCTGGCGTTCGCCGGG 
ACTGTAGTGCTCGTGTTCGCCGGCCATGCGGAACAGATGGCGCTTGTCGTAGTGCAGCATCTCGCCGTCCGG 
GCGCGCCCAGAGCAGGCGATTGCGATGGCTACCGTCGGCGAGCTGGACGATCAGGCTGCCGGTGACCACCGC 
ACCAAGGCGCCGGGCCTGCTCCAGCAGCCAGGCATGGGTCGGCCCCAGCTCGGGCTCGGCCTGCTCGGCCGA 
AGCCATGCTGAAACCCGTGGTGAACATCTCCGGGAGGACCACCAGGTCGGCGCCGGCGGCGCTCTCCAGCAG 
GGCGGCGAAATGCTCGCGGTTGGCCTGGGCGTCGTGCCAGGCCAGGGAGGATTGGACCAGGGCGATGTCCAG 
GTCCGGCAGAACCGTCAGATCGCGCATAGCTTTTCCGCTGCCTGA