ViewGene
Locus Name:
GeneID:
Location:

GeneID:6467
TrivialName: PA14_14980
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14980
PAO1 Ortholog Locus:
Sequence Length:198
Protein Length:65
Start: 1271546
Stop: 1271743
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
GID4871 (PA14_14970) and GID6467 (PA14_14980) replaced by GID7407 (PA14_14975). Homology: gb|AAG07183.1|AE004798_6 (AE004798) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 64/65 (98%), Positives = 65/65 (100%)
Sequence:
GTGTCGGCGGCGGACATTTCCCGGGTCTTCGGCGACGGTCAATTGCAGCAACTGGCGGACTCCGCCGGAGTC
AGCCAGGGCGAGGCGGCCGAACACCTGAGCAGCCTGCTGCCGGAACTGGTCAACAAGCTGACGCCGGACGGC
CAGGCGCCGCAGGGCGACCTGGACATCGGTTCGCTGCTGGCGCGCTTCAGCTAA
Translation:
MSAADISRVFGDGQLQQLADSAGVSQGEAAEHLSSLLPELVNKLTPDGQAPQGDLDIGSLLARFS*
AnnotationID:6468GeneID:6467
AnnotatorUID: danlee
Modification Date/Time: 2006-03-10 15:03:51
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:
GID4871 (PA14_14970) and GID6467 (PA14_14980) replaced by GID7407 (PA14_14975).



















    ReferenceID:16234




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30039




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31764




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6471_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6467
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7994
                           PA3796_tr
                           translation of PA3796
                           195
                           33.33
                           33.33
                           130
                           318.0
     

     
     
199891
                           gb|AAG07183.1|AE004798_6
                           (AE004798) hypothetical protein PA3796 [Pseudomonas aeruginosa PAO1]
                           195
                           33.33
                           33.33
                           130
                           318.0
     

     






      

          
GC ORFID: 49469How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3682391Stop: 3682194

          
Length: 198


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3796 translation of PA3796Homolog Bit Score 127.0

          
Other Homologs:  t_PA3796 translation of PA3796 (BLASTP 127)

          
GC ORF Sequence

           
GTGTCGGCGGCGGACATTTCCCGGGTCTTCGGCGACGGTCAATTGCAGCAACTGGCGGACTCCGCCGGAGTC 
AGCCAGGGCGAGGCGGCCGAACACCTGAGCAGCCTGCTGCCGGAACTGGTCAACAAGCTGACGCCGGACGGC 
CAGGCGCCGCAGGGCGACCTGGACATCGGTTCGCTGCTGGCGCGCTTCAGCTAA