ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6461

TrivialName: PA14_15220

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_15220

PAO1 Ortholog Locus:

Sequence Length: 2829

Protein Length: 942

Start: 1289820

Stop: 1292648

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAF09665.1|AE001870_4 (AE001870) conserved hypothetical protein [Deinococcus radiodurans] Identities = 174/741 (23%), Positives = 256/741 (34%), Gaps = 97/741 (13%)

Sequence:

GTGGTGGATCACCTCGTTGAGGTAGGCCAGGGCCCGTTGGCTGAGGCGGATCATCGCGGCTCAGTCCAGCAG
CGACAGGGTCACCGGCGTCCGGTGGTTGTCCTCGACCCGCACCTCCAGTTCGCCTTCCGCGAGGCGCGCCTT
CAGGCGCTGTCCCGGCTGGGTCTGGCCGGCATCGCGGATCGCCCGGCCACGCTCGTCGAGGAGGATGCTGTA
GCCGCGGCCCAGGGTCGCCAGCGGGCTGACCACGTTGAGCGTCTGCGCCAGTCCTTCGAGGTGCTGACGACG
ATCCTTCAGTACCTCGCGGGCGGCGCGCGGCAGGCGCGCGGCGAGGCTGTCGAGCTTCTGCCGGAGCAGCGC
CAGGGTGCGGCCCGGATGCTGTGCGGCGAGACGCGTCTCCAGGCGGACCAGGCGTTCGTGGCGGACCGCCAG
ATGGCGCTCGAAGGCACGGCGCAGGCGCATGTCCAGGTCGTCCAGGCGCTGCGCCTGCTGGCGCAGGCGTTC
TCCGGGATGGCGCAGGCGGCGGGCGACGCCTTCCAGGCGCAGGCGTTCGCGCAGCAACTGGTCGCGCATGCG
CAGCACCAGGCGCCGGCGCAGGCCGTCGAGACGCTGCTGCAGGTCGCCGGCGTTGGGCGCCAGCAGTTCGGC
GGCGGCCGAAGGCGTCGGGGCGCGCACGTCGGCGACGAAGTCGCTGATCGATACGTCGGTCTCGTGGCCGAC
CGCGCTGACGATCGGCGTGGCGCAGGCCGCCACGGCGCGCGCCACCGCTTCTTCGTTGAAGCACCAGAGGTC
TTCCAGGGAACCGCCGCCCCGGGCCAGGATCAGCGCGTCGAAGCCTTGCCGGTCGGCCAGTTGCAGCGCGCG
GACGATCTGCGCGACGGCCTCGCGGCCCTGCACTGCGGTGGGCACCAGGGTCAGCTCGACCTGCGGTGCGCG
GCGGCGAAACACGCTGATGATGTCGCGGATCACCGCCCCGCTGGGCGAACTGACGATACCGATGCGGCGCGG
ATGGGCGGGCAGCGGACGCTTGCGTTCGCTGGCGAACAGGCCTTCGCCGGCGAGTTTTTCCTTCAATGCCTC
GAAGGCCAGGCGCAGGGCGCCGTCGCCGGCCGGCTCGACGGTATCGGCGATCAACTGGTAGTCGCCGCGTCC
CTCGAACAGCGAGATCTTCCCGCGCACCTTTACCGCCAGCCCGTCGCGCAAGGCCTGGCGTACGCGCAGGGC
GTTCTGCCGGAACAGCGCGCAGCGGATCTGCGCGTTGCTGTCCTTGAGGGTGAAGTAGACATGGCCGGAGGC
CGGCCGGGCGAGGTTGGACAGCTCGCCCTCGACCCAGACCTGCGGGAACACGTCTTCCAGCAGCAGGCGGGC
GCGCTGGTTCAGTTGGCTGACGGTCAGCACCTCGCGATCGAGGCCGAGCCGTTGGAAGGGATCGTTACGCAT
GGGCGGCATGATAAGGCGGCGCACCGGGATGTGCGATCAATCCTTGGCTTCGTTCGGCAGATTCTCCAGGAA
ATATTCGACGAAGCCTTCCACCAGGGGGCTATCGTCGCGTCGCCAGGCCAGCGCCACCTCGCTGTATGCCTC
GGCCTCGGCCAGAGACATGAAGCGCACGGCGGGCGGTGCGATGGCGCGCATCGAGGCGGGCACCAGGGCGAC
GCCGAAGCCGGCCTCGATCAGTTGCAACTGGCTGGTCTTGCGCGACAGCGCGCGCGCCGGGCGTGGGTAGAA
ACCGGCGCCGAGGCAGAGTTCGGCGGCGCGATAGCTGAGGCCGCCGCGTTGCAGGTGGGGAATGGAGACGAA
GGTTTCTCCGGCCAGGGCGGCCAGGGCCACGGGGGCTTCACGGCGGGCCAGCGGATGGTCGGCGGCGAGAGC
CAGGAGCAACGGCTCGCGGTACAGGGCGCGCAGGTGCAGCCGGGGATGCTGGCGCAGCACCGGCAGGCGCAG
CAGGCCAAGGTCCAGGCGTCCTTCGGCGAGATCGGCGAGTTGCTGCTCGGAGGATTGCTGGGTCAGTTCCAG
GCGGACGCCGCTCTGCGCCGCGAGGTAGCCGCGCAGCGCCGCTTGCAGGCCGCCCACCAGCGGCACCGAGCT
GGAGTGCCCCAGGCGCAGCAGGCCATGGCCGCCTTCACCGACCTCGCGAGCCAGGCGCCGGGCGGCCTCCAG
GTCGCCGAGCAGGCGCTGCGCGCGTGGCAGGAAGGCGCGACCGGCCGGCGTCAGCTCGACCTGGCGCGGACC
GCGGCGGAGCAGTGGGGTGCCGATGCTGTCCTCCAGTTCGCGCACCTGCCGGCTGAGCGCCGACTGGGCGAC
GAACAGGCGTTCGGCGGCACGGCTGAAGCCGCCGGACTCGACGATTTCGACGAAGTAATGGAGTTGCCGCAA
AGAGATCATCGGAAGATTCCCCATGCCTTTTCGAGATGGCTACAGGGCTCGGATTGTATTGGCTGGCGCGCC
GTTGCGCTCGCTAGAGTGCGCAGGTCGTCGTTCCGGGAGTCGCCATGTCCTCGCTCGATCCGTCAGTCCTGT
TCGCCGCCCTGCCGTTCAGCCTATGGCAATGGCTGCTGGTCGAACTGGCCATCGTCCTCGCCTATGTGGTGT
TCGGCATCGCCGGCTTCGGCACCGCGCTGGTCGCCGGCCCGTTGCTGGCCGGGGTGCTGCCGCTGTCGCAGA
TCATTCCGCTGCTGGTCCTGCTGGATTTCAGCGCGTCGTTCGGCAACTGGCTGCCGGCGCGGCGGCAGATCG
CCGTCACTGAACTCAAGCGTCTGCTGCCCTGCATGCTGCTGGGCTGTGCGCTCGGGGCGTACGGACTTCTGG
CGCTACGCGCGGAGCTGCTGA

Translation:

MVDHLVEVGQGPLAEADHRGSVQQRQGHRRPVVVLDPHLQFAFREARLQALSRLGLAGIADRPATLVEEDAV
AAAQGRQRADHVERLRQSFEVLTTILQYLAGGARQARGEAVELLPEQRQGAARMLCGETRLQADQAFVADRQ
MALEGTAQAHVQVVQALRLLAQAFSGMAQAAGDAFQAQAFAQQLVAHAQHQAPAQAVETLLQVAGVGRQQFG
GGRRRRGAHVGDEVADRYVGLVADRADDRRGAGRHGARHRFFVEAPEVFQGTAAPGQDQRVEALPVGQLQRA
DDLRDGLAALHCGGHQGQLDLRCAAAKHADDVADHRPAGRTDDTDAARMGGQRTLAFAGEQAFAGEFFLQCL
EGQAQGAVAGRLDGIGDQLVVAASLEQRDLPAHLYRQPVAQGLAYAQGVLPEQRAADLRVAVLEGEVDMAGG
RPGEVGQLALDPDLREHVFQQQAGALVQLADGQHLAIEAEPLEGIVTHGRHDKAAHRDVRSILGFVRQILQE
IFDEAFHQGAIVASPGQRHLAVCLGLGQRHEAHGGRCDGAHRGGHQGDAEAGLDQLQLAGLARQRARRAWVE
TGAEAEFGGAIAEAAALQVGNGDEGFSGQGGQGHGGFTAGQRMVGGESQEQRLAVQGAQVQPGMLAQHRQAQ
QAKVQASFGEIGELLLGGLLGQFQADAALRREVAAQRRLQAAHQRHRAGVPQAQQAMAAFTDLASQAPGGLQ
VAEQALRAWQEGATGRRQLDLARTAAEQWGADAVLQFAHLPAERRLGDEQAFGGTAEAAGLDDFDEVMELPQ
RDHRKIPHAFSRWLQGSDCIGWRAVALARVRRSSFRESPCPRSIRQSCSPPCRSAYGNGCWSNWPSSSPMWC
SASPASAPRWSPARCWPGCCRCRRSFRCWSCWISARRSATGCRRGGRSPSLNSSVCCPACCWAVRSGRTDFW
RYARSC*

AnnotationID:6462 GeneID:6461

AnnotatorUID: diggins

Modification Date/Time: 2004-04-21 10:10:19

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16228

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30027

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:31778

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6461_cdd.html

URL:

GC ORFID: `49463`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `3664117`	Stop: `3661289`
Length: `2829`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGGTGGATCACCTCGTTGAGGTAGGCCAGGGCCCGTTGGCTGAGGCGGATCATCGCGGCTCAGTCCAGCAG CGACAGGGTCACCGGCGTCCGGTGGTTGTCCTCGACCCGCACCTCCAGTTCGCCTTCCGCGAGGCGCGCCTT CAGGCGCTGTCCCGGCTGGGTCTGGCCGGCATCGCGGATCGCCCGGCCACGCTCGTCGAGGAGGATGCTGTA GCCGCGGCCCAGGGTCGCCAGCGGGCTGACCACGTTGAGCGTCTGCGCCAGTCCTTCGAGGTGCTGACGACG ATCCTTCAGTACCTCGCGGGCGGCGCGCGGCAGGCGCGCGGCGAGGCTGTCGAGCTTCTGCCGGAGCAGCGC CAGGGTGCGGCCCGGATGCTGTGCGGCGAGACGCGTCTCCAGGCGGACCAGGCGTTCGTGGCGGACCGCCAG ATGGCGCTCGAAGGCACGGCGCAGGCGCATGTCCAGGTCGTCCAGGCGCTGCGCCTGCTGGCGCAGGCGTTC TCCGGGATGGCGCAGGCGGCGGGCGACGCCTTCCAGGCGCAGGCGTTCGCGCAGCAACTGGTCGCGCATGCG CAGCACCAGGCGCCGGCGCAGGCCGTCGAGACGCTGCTGCAGGTCGCCGGCGTTGGGCGCCAGCAGTTCGGC GGCGGCCGAAGGCGTCGGGGCGCGCACGTCGGCGACGAAGTCGCTGATCGATACGTCGGTCTCGTGGCCGAC CGCGCTGACGATCGGCGTGGCGCAGGCCGCCACGGCGCGCGCCACCGCTTCTTCGTTGAAGCACCAGAGGTC TTCCAGGGAACCGCCGCCCCGGGCCAGGATCAGCGCGTCGAAGCCTTGCCGGTCGGCCAGTTGCAGCGCGCG GACGATCTGCGCGACGGCCTCGCGGCCCTGCACTGCGGTGGGCACCAGGGTCAGCTCGACCTGCGGTGCGCG GCGGCGAAACACGCTGATGATGTCGCGGATCACCGCCCCGCTGGGCGAACTGACGATACCGATGCGGCGCGG ATGGGCGGGCAGCGGACGCTTGCGTTCGCTGGCGAACAGGCCTTCGCCGGCGAGTTTTTCCTTCAATGCCTC GAAGGCCAGGCGCAGGGCGCCGTCGCCGGCCGGCTCGACGGTATCGGCGATCAACTGGTAGTCGCCGCGTCC CTCGAACAGCGAGATCTTCCCGCGCACCTTTACCGCCAGCCCGTCGCGCAAGGCCTGGCGTACGCGCAGGGC GTTCTGCCGGAACAGCGCGCAGCGGATCTGCGCGTTGCTGTCCTTGAGGGTGAAGTAGACATGGCCGGAGGC CGGCCGGGCGAGGTTGGACAGCTCGCCCTCGACCCAGACCTGCGGGAACACGTCTTCCAGCAGCAGGCGGGC GCGCTGGTTCAGTTGGCTGACGGTCAGCACCTCGCGATCGAGGCCGAGCCGTTGGAAGGGATCGTTACGCAT GGGCGGCATGATAAGGCGGCGCACCGGGATGTGCGATCAATCCTTGGCTTCGTTCGGCAGATTCTCCAGGAA ATATTCGACGAAGCCTTCCACCAGGGGGCTATCGTCGCGTCGCCAGGCCAGCGCCACCTCGCTGTATGCCTC GGCCTCGGCCAGAGACATGAAGCGCACGGCGGGCGGTGCGATGGCGCGCATCGAGGCGGGCACCAGGGCGAC GCCGAAGCCGGCCTCGATCAGTTGCAACTGGCTGGTCTTGCGCGACAGCGCGCGCGCCGGGCGTGGGTAGAA ACCGGCGCCGAGGCAGAGTTCGGCGGCGCGATAGCTGAGGCCGCCGCGTTGCAGGTGGGGAATGGAGACGAA GGTTTCTCCGGCCAGGGCGGCCAGGGCCACGGGGGCTTCACGGCGGGCCAGCGGATGGTCGGCGGCGAGAGC CAGGAGCAACGGCTCGCGGTACAGGGCGCGCAGGTGCAGCCGGGGATGCTGGCGCAGCACCGGCAGGCGCAG CAGGCCAAGGTCCAGGCGTCCTTCGGCGAGATCGGCGAGTTGCTGCTCGGAGGATTGCTGGGTCAGTTCCAG GCGGACGCCGCTCTGCGCCGCGAGGTAGCCGCGCAGCGCCGCTTGCAGGCCGCCCACCAGCGGCACCGAGCT GGAGTGCCCCAGGCGCAGCAGGCCATGGCCGCCTTCACCGACCTCGCGAGCCAGGCGCCGGGCGGCCTCCAG GTCGCCGAGCAGGCGCTGCGCGCGTGGCAGGAAGGCGCGACCGGCCGGCGTCAGCTCGACCTGGCGCGGACC GCGGCGGAGCAGTGGGGTGCCGATGCTGTCCTCCAGTTCGCGCACCTGCCGGCTGAGCGCCGACTGGGCGAC GAACAGGCGTTCGGCGGCACGGCTGAAGCCGCCGGACTCGACGATTTCGACGAAGTAATGGAGTTGCCGCAA AGAGATCATCGGAAGATTCCCCATGCCTTTTCGAGATGGCTACAGGGCTCGGATTGTATTGGCTGGCGCGCC GTTGCGCTCGCTAGAGTGCGCAGGTCGTCGTTCCGGGAGTCGCCATGTCCTCGCTCGATCCGTCAGTCCTGT TCGCCGCCCTGCCGTTCAGCCTATGGCAATGGCTGCTGGTCGAACTGGCCATCGTCCTCGCCTATGTGGTGT TCGGCATCGCCGGCTTCGGCACCGCGCTGGTCGCCGGCCCGTTGCTGGCCGGGGTGCTGCCGCTGTCGCAGA TCATTCCGCTGCTGGTCCTGCTGGATTTCAGCGCGTCGTTCGGCAACTGGCTGCCGGCGCGGCGGCAGATCG CCGTCACTGAACTCAAGCGTCTGCTGCCCTGCATGCTGCTGGGCTGTGCGCTCGGGGCGTACGGACTTCTGG CGCTACGCGCGGAGCTGCTGA