ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6459

TrivialName: PA14_15320

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_15320

PAO1 Ortholog Locus:

Sequence Length: 1536

Protein Length: 511

Start: 1299178

Stop: 1300713

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens] Identities = 149/507 (29%), Positives = 177/507 (34%), Gaps = 102/507 (20%)

Sequence:

GTGCTGCACGGGGCTGTTCGATTCAGCCCCGTGTCGTTTTCGAATTCCGTAGCGAGAGATGGCCATGTCCCA
AGACATTCACGCCCACCGTATCCTGATCCTCGATTTCGGCTCCCAGTACACCCAACTGATCGCCCGCCGCGT
GCGCGAGATCGGCGTGTATTGCGAAATCCATCCCTTCGACATGAGCAACGAGGCGATCATCGCCTTCGCGCC
GCGCGGCATCATCCTCGCCGGCGGTCCCGAGTCGGTGCACGAAGCCGACAGCCCGCGCGCGCCGCAGGCGGT
GTTCGACCTGAAGGTGCCGCTGTTCGGCATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAA
GGTGCAGGGCTCCGACGTGCGCGAGTTCGGCTACGCCCGCGTCGACGTGGTTGGCAAGGCGCGCCTGCTGGA
CGGCATCGAGGACCACGTGGACGACGACGGCGTGCTCGGCCTCGACGTGTGGATGAGCCACGGCGACAAGGT
CACCGAGATGCCGGCCGGCTTCCACATCCTGGCCAGCACCCCGAGCTGCCCGATCGCCGCCATGGCCGACGA
TGCCCGCGCCTACTACGGCGTGCAATTCCACCCGGAAGTCACCCACACCAAGCAGGGCCTGCGCATTCTCTC
GCGCTTCGTCCTCGACATCTGTGGTTGCGCCGCGCTGTGGACCCCCTCGAACATCGTCGACGACGCCATCGC
CACCGTGCGCGCCCAGGTCGGTTCCTCCAAGGTCCTGCTCGGCCTCTCCGGCGGCGTGGACTCCTCGGTGGT
CGCCGCGCTGCTGCACAAGGCCATCGGCGACCAACTGACCTGCGTGTTCGTCGACAACGGCCTGCTGCGCCT
GCACGAAGGCGACCAGGTGATGGCCATGTTCGCCGAGAACATGGGCGTGAAGGTGATCCGCGCCAACGCCGA
GGACAAGTTCCTCGGCCGCCTGGCCGGCGTCGCCGATCCGGAAGAGAAGCGCAAGATCATCGGCCGCACCTT
CATCGAAGTCTTCGACGAAGAAGCCACCAAGCTGCAGGACGTGAAGTTCCTCGCCCAGGGCACCATCTACCC
CGACGTGATCGAGTCGGCCGGCGCCAAAACCGGCAAGGCCCACGTGATCAAGTCGCACCACAACGTCGGCGG
CCTGCCGGAGGACATGCAGTTCGAACTGGTCGAGCCGCTGCGCGAACTGTTCAAGGACGAAGTGCGCAAGAT
CGGCCTGGAGCTGGGCCTGCCCTACGACATGGTCTACCGCCACCCGTTCCCCGGCCCGGGCCTGGGCGTGCG
CATCCTCGGCGAGGTGAAGAAGGAGTACGCCGACCTGCTGCGCCAGGCCGACCACATCTTCATCGAGGAACT
GCGCGCCTTCGACTGGTACCACAAGACCAGCCAGGCGTTCGTGGTGTTCCAGCCGGTGAAATCGGTCGGCGT
GGTCGGCGACGGCCGTCGCTACGCCTGGGTCGTCGCCCTGCGCGCGGTGGAGACCATCGACTTCATGACCGC
GCGCTGGGCGCACCTGCCCTATGA

Translation:

MLHGAVRFSPVSFSNSVARDGHVPRHSRPPYPDPRFRLPVHPTDRPPRARDRRVLRNPSLRHEQRGDHRLRA
ARHHPRRRSRVGARSRQPARAAGGVRPEGAAVRHLLRHADHGRADGRQGAGLRRARVRLRPRRRGWQGAPAG
RHRGPRGRRRRARPRRVDEPRRQGHRDAGRLPHPGQHPELPDRRHGRRCPRLLRRAIPPGSHPHQAGPAHSL
ALRPRHLWLRRAVDPLEHRRRRHRHRARPGRFLQGPARPLRRRGLLGGRRAAAQGHRRPTDLRVRRQRPAAP
ARRRPGDGHVRREHGREGDPRQRRGQVPRPPGRRRRSGREAQDHRPHLHRSLRRRSHQAAGREVPRPGHHLP
RRDRVGRRQNRQGPRDQVAPQRRRPAGGHAVRTGRAAARTVQGRSAQDRPGAGPALRHGLPPPVPRPGPGRA
HPRRGEEGVRRPAAPGRPHLHRGTARLRLVPQDQPGVRGVPAGEIGRRGRRRPSLRLGRRPARGGDHRLHDR
ALGAPAL*

AnnotationID:6460 GeneID:6459

AnnotatorUID: diggins

Modification Date/Time: 2004-04-21 12:12:26

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16226

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30023

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:31786

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6459_cdd.html

URL:

GC ORFID: `49461`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `3654759`	Stop: `3653224`
Length: `1536`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGCTGCACGGGGCTGTTCGATTCAGCCCCGTGTCGTTTTCGAATTCCGTAGCGAGAGATGGCCATGTCCCA AGACATTCACGCCCACCGTATCCTGATCCTCGATTTCGGCTCCCAGTACACCCAACTGATCGCCCGCCGCGT GCGCGAGATCGGCGTGTATTGCGAAATCCATCCCTTCGACATGAGCAACGAGGCGATCATCGCCTTCGCGCC GCGCGGCATCATCCTCGCCGGCGGTCCCGAGTCGGTGCACGAAGCCGACAGCCCGCGCGCGCCGCAGGCGGT GTTCGACCTGAAGGTGCCGCTGTTCGGCATCTGCTACGGCATGCAGACCATGGCCGAGCAGATGGGCGGCAA GGTGCAGGGCTCCGACGTGCGCGAGTTCGGCTACGCCCGCGTCGACGTGGTTGGCAAGGCGCGCCTGCTGGA CGGCATCGAGGACCACGTGGACGACGACGGCGTGCTCGGCCTCGACGTGTGGATGAGCCACGGCGACAAGGT CACCGAGATGCCGGCCGGCTTCCACATCCTGGCCAGCACCCCGAGCTGCCCGATCGCCGCCATGGCCGACGA TGCCCGCGCCTACTACGGCGTGCAATTCCACCCGGAAGTCACCCACACCAAGCAGGGCCTGCGCATTCTCTC GCGCTTCGTCCTCGACATCTGTGGTTGCGCCGCGCTGTGGACCCCCTCGAACATCGTCGACGACGCCATCGC CACCGTGCGCGCCCAGGTCGGTTCCTCCAAGGTCCTGCTCGGCCTCTCCGGCGGCGTGGACTCCTCGGTGGT CGCCGCGCTGCTGCACAAGGCCATCGGCGACCAACTGACCTGCGTGTTCGTCGACAACGGCCTGCTGCGCCT GCACGAAGGCGACCAGGTGATGGCCATGTTCGCCGAGAACATGGGCGTGAAGGTGATCCGCGCCAACGCCGA GGACAAGTTCCTCGGCCGCCTGGCCGGCGTCGCCGATCCGGAAGAGAAGCGCAAGATCATCGGCCGCACCTT CATCGAAGTCTTCGACGAAGAAGCCACCAAGCTGCAGGACGTGAAGTTCCTCGCCCAGGGCACCATCTACCC CGACGTGATCGAGTCGGCCGGCGCCAAAACCGGCAAGGCCCACGTGATCAAGTCGCACCACAACGTCGGCGG CCTGCCGGAGGACATGCAGTTCGAACTGGTCGAGCCGCTGCGCGAACTGTTCAAGGACGAAGTGCGCAAGAT CGGCCTGGAGCTGGGCCTGCCCTACGACATGGTCTACCGCCACCCGTTCCCCGGCCCGGGCCTGGGCGTGCG CATCCTCGGCGAGGTGAAGAAGGAGTACGCCGACCTGCTGCGCCAGGCCGACCACATCTTCATCGAGGAACT GCGCGCCTTCGACTGGTACCACAAGACCAGCCAGGCGTTCGTGGTGTTCCAGCCGGTGAAATCGGTCGGCGT GGTCGGCGACGGCCGTCGCTACGCCTGGGTCGTCGCCCTGCGCGCGGTGGAGACCATCGACTTCATGACCGC GCGCTGGGCGCACCTGCCCTATGA