ViewGene
Locus Name:
GeneID:
Location:

GeneID:6451
TrivialName: PA14_15440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15440
PAO1 Ortholog Locus:
Sequence Length:1365
Protein Length:454
Start: 1308465
Stop: 1307101
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK18582.1|AF348706_271 (AF348706) Tn501, conserved hypothetical orf [Shigella flexneri]
Identities = 452/454 (99%), Positives = 452/454 (99%)
Sequence:
ATGCGGCGGACGGCGACGAAGCGGCCGCGCAGCTTGCCCTGCTGCGTCAGTTCGTCGAGCGTCGGCGCGAAG
CGTTGGCCGATCTGGAAGTGCAGTTGGCCACCCTGCCGACCGAGCCGGCACAGCACGCGGAGAGTCTGCCAT
GAACAACCCCGAGCGCTTGCCGTCCGAGACGCACAAACCGATCACCGGCTACCTGTGGGGCGGACTGGCTGT
GCTGACTTGCCCCTGCCACCTGCCCATCCTCGCTGTCGTGCTGGCCGGCACAACCGCCGGTGCTTTCCTCGG
CGAGCATTGGGTCATCGCGGCGCTCGGTTTGACCGGCCTGTTCCTTCTGTCCCTGTCGCGGGCGCTGCGGGC
ATTCAGGGAAAGAGAATGAGCGCTTTCCGGCCGGATGGATGGACGACGCCGGAACTGGCCCAAGCGGTCGAG
CGCGGGCAGCTTGAACTGCACTACCAGCCCGTCGTCGATCTGCGCAGTGGTGGGATTGTCGGCGCGGAAGCC
CTGTTGCGCTGGCGTCATCCGACGCTTGGACTATTGCCACCGGGCCAGTTCCTGCCCGTGGTCGAATCGTCC
GGCCTGATGCCTGAAATCGGCGCTTGGGTGCTGGGCGAAGCCTGCCGCCAGATGCGTGACTGGCGAATGCTG
GCATGGCGACCGTTCCGGCTGGCCGTCAATGTTTCGGCGAGCCAAGTGGGACCGGACTTCGACGGGTGGGTA
AAGGGCGTGCTGGCTGATGCCGAGTTGCCCGCCGAGTATCTCGAAATCGAGCTGACCGAATCGGTCGCGTTT
GGTGATCCGGCGATCTTCCCCGCCCTGGACGCCTTGCGGCAGATCGGTGTGCGCTTCGCCGCCGATGACTTC
GGGACGGGGTATTCCTGTCTGCAACATCTGAAGTGCTGCCCAATCAGCACGCTCAAGATCGACCAATCGTTT
GTCGCCGGGCTCGCCAACGACCGCCGCGACCAAACCATCGTGCACACCGTGATTCAGCTTGCGCACGGGCTG
GGCATGGATGTGGTGGCTGAAGGCGTGGAAACATCGGCGAGTCTTGATCTATTGCGACAAGCGGACTGCGAC
ACAGGACAAGGCTTCCTGTTCGCGAAGCCAATGCCGGCGGCGGCATTCGCCGTCTTCGTCAGTCAATGGAGG
GGTGCCACCATGAATGCAAGTGACTCGACCACCACCAGTTGCTGCGTGTGCTGCAAGGAAATCCCGCTCGAT
GCCGCCTTCACCCCGGAAGGCGCGGAATACGTCGAGCACTTCTGCGGGTTGGAGTGTTATCAACGCTTCGAA
GCGCGTGCCAAGACAGGGAACGAAACCGATGCCGATCCGAACGCCTGCGACTCGCTACCGTCAGATTGA
Translation:
MRRTATKRPRSLPCCVSSSSVGAKRWPIWKCSWPPCRPSRHSTRRVCHEQPRALAVRDAQTDHRLPVGRTGC
ADLPLPPAHPRCRAGRHNRRCFPRRALGHRGARFDRPVPSVPVAGAAGIQGKRMSAFRPDGWTTPELAQAVE
RGQLELHYQPVVDLRSGGIVGAEALLRWRHPTLGLLPPGQFLPVVESSGLMPEIGAWVLGEACRQMRDWRML
AWRPFRLAVNVSASQVGPDFDGWVKGVLADAELPAEYLEIELTESVAFGDPAIFPALDALRQIGVRFAADDF
GTGYSCLQHLKCCPISTLKIDQSFVAGLANDRRDQTIVHTVIQLAHGLGMDVVAEGVETSASLDLLRQADCD
TGQGFLFAKPMPAAAFAVFVSQWRGATMNASDSTTTSCCVCCKEIPLDAAFTPEGAEYVEHFCGLECYQRFE
ARAKTGNETDADPNACDSLPSD*
AnnotationID:6452GeneID:6451
AnnotatorUID: danlee
Modification Date/Time: 2005-10-17 16:04:08
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01948, smart00052
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Putative mercury resistance protein of unknown function
Homology:
gi|13310758|gb|AAK18582.1|  Tn501, conserved hypothetical orf [Shigella flexneri]
     Length=485
     Score =  946 bits (2445),  Expect = 0.0
     Identities = 452/454 (99%), Positives = 452/454 (99%), Gaps = 0/454 (0%)

gi|1182007|emb|CAA77326.1|  unnamed protein product [Pseudomonas aeruginosa]
     Length=329
     Score =  677 bits (1746),  Expect = 0.0
     Identities = 328/329 (99%), Positives = 328/329 (99%), Gaps = 0/329 (0%)

gi|27261168|gb|AAN87565.1|  UrfM [Escherichia coli]
     Length=314
     Score =  441 bits (1134),  Expect = 3e-122
     Identities = 219/285 (76%), Positives = 240/285 (84%), Gaps = 1/285 (0%)
Structural Features:
cd01948, EAL, EAL domain. Also known as domain of unknown function 2 (DUF2). 
             CD-Length = 240 residues,  99.6% aligned
             Score =  304 bits (779), Expect = 2e-83

smart00052, DUF2, Domain of Unknown Function 2; Domain apparently occurring exclusively in eubacteria.
             CD-Length = 246 residues,  98.8% aligned
             Score =  303 bits (777), Expect = 3e-83
Genomic Context:






   
Comment:


















    ReferenceID:12711




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16952




  
Author/Investigator(s):
        Essa,A.M., Julian,D.J., Kidd,S.P., Brown,N.L. and Hobman,J.L





  
Title:
        Mercury Resistance Determinants Related to Tn21, Tn1696, and Tn5053
            in Enterobacteria from the Preantibiotic Era




  
PubMed:
        12604550


MedLine:
        




    
Source:
JOURNAL   Antimicrob. Agents Chemother. 47 (3), 1115-1119 (2003)







    
Reference Type:Journal 







    
Data:


    		




 
URL:

















    ReferenceID:30007




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6451
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
199527
                           gb|AAK18582.1|AF348706_271
                           (AF348706) Tn501, conserved hypothetical orf [Shigella flexneri]
                           485
                           93.19
                           93.19
                           31
                           2445.0
     

     
     
199528
                           emb|CAD97548.1|
                           (AJ564903) hypothetical protein [uncultured bacterium]
                           454
                           72.46
                           72.46
                           125
                           1750.0
     

     
     
199529
                           emb|CAA77326.1|
                           (Z00027) unnamed protein product [Pseudomonas aeruginosa]
                           454
                           72.24
                           72.24
                           125
                           1746.0
     

     
     
199530
                           gb|AAC38223.1|
                           (U80214) Urf2 [Pseudomonas stutzeri]
                           454
                           71.58
                           71.58
                           125
                           1728.0
     

     
     
199531
                           emb|CAD83842.1|
                           (AJ551280) Urf2 protein [Pseudomonas sp. A19-1]
                           454
                           55.94
                           60.79
                           126
                           1328.0
     

     






      

          
GC ORFID: 49453How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3645472Stop: 3646836

          
Length: 1365


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4601 translation of PA4601Homolog Bit Score 214.0

          
Other Homologs:  t_PA4601 translation of PA4601 (BLASTP 214), psyr_15may02_Scaffold9_revised_gene8164 related to: gi|17545307|ref|NP_518709.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum] emb|CAD14118.1| (AL646060) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum] (BLASTP 210), psyr_15may02_Scaffold4_revised_gene5640 related to: gi|15599797|ref|NP_253291.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa] pir||C83070 conserved hypothetical protein PA4601 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG07989.1|AE004874_2 (AE004874) conserved h-TRUNCATED- (BLASTP 209), psyr_15may02_Scaffold2_revised_gene4046 related to: gi|15595482|ref|NP_248976.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa] pir||E83610 conserved hypothetical protein PA0285 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG03674.1|AE004466_8 (AE004466) conserved hyp-TRUNCATED- (BLASTP 205), psyr_15may02_Scaffold5_revised_gene6225 related to: gi|15600635|ref|NP_254129.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa] pir||G82965 conserved hypothetical protein PA5442 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG08827.1|AE004957_2 (AE004957) conserved hyp-TRUNCATED- (BLASTP 204), psyr_15may02_Scaffold2_revised_gene4057 related to: gi|15600488|ref|NP_253982.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa] pir||B82984 hypothetical protein PA5295 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG08680.1|AE004942_3 (AE004942) hypothetical protein [Pseudomonas-TRUNCATED- (BLASTP 202), t_PA4367 translation of PA4367 (BLASTP 201), t_PA1727 translation of PA1727 (BLASTP 199), t_PA5017 translation of PA5017 (BLASTP 198), t_PA0285 translation of PA0285 (BLASTP 198), t_PA3311 translation of PA3311 (BLASTP 197), psyr_15may02_Scaffold12_revised_gene1977 related to: gi|15599563|ref|NP_253057.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa] pir||F83100 conserved hypothetical protein PA4367 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG07755.1|AE004852_8 (AE004852) conserved hyp-TRUNCATED- (BLASTP 194), psyr_15may02_Scaffold6_revised_gene6833 related to: gi|15600210|ref|NP_253704.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa] pir||A83019 conserved hypothetical protein PA5017 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG08402.1|AE004914_3 (AE004914) conserved hyp-TRUNCATED- (BLASTP 190), t_PA0575 translation of PA0575 (BLASTP 189), t_PA5442 translation of PA5442 (BLASTP 189), psyr_15may02_Scaffold1_revised_gene453 related to: gi|15599797|ref|NP_253291.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa] pir||C83070 conserved hypothetical protein PA4601 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG07989.1|AE004874_2 (AE004874) conserved h-TRUNCATED- (BLASTP 189), t_PA5295 translation of PA5295 (BLASTP 187), psyr_15may02_Scaffold6_revised_gene6773 related to: gi|15595772|ref|NP_249266.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa] pir||H83574 conserved hypothetical protein PA0575 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG03964.1|AE004493_9 (AE004493) conserved h-TRUNCATED- (BLASTP 186), psyr_15may02_Scaffold3_revised_gene4921 related to: gi|17232389|ref|NP_488937.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120] dbj|BAB76596.1| (AP003598) ORF_ID:all4897~hypothetical protein [Nostoc sp. PCC 7120] (BLASTP 184), psyr_15may02_Scaffold1_revised_gene1407 related to: gi|15596924|ref|NP_250418.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa] pir||H83428 conserved hypothetical protein PA1727 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG05116.1|AE004599_1 (AE004599) conserved hyp-TRUNCATED- (BLASTP 184), psyr_15may02_Scaffold4_revised_gene5601 related to: gi|15597763|ref|NP_251257.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa] pir||B83324 hypothetical protein PA2567 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG05955.1|AE004685_1 (AE004685) hypothetical protein [Pseudomonas-TRUNCATED- (BLASTP 179), psyr_15may02_Scaffold5_revised_gene6072 related to: gi|15598507|ref|NP_252001.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa] pir||B83232 conserved hypothetical protein PA3311 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG06699.1|AE004753_7 (AE004753) conserved hyp-TRUNCATED- (BLASTP 178), t_PA2567 translation of PA2567 (BLASTP 167)

          
GC ORF Sequence

           
ATGCGGCGGACGGCGACGAAGCGGCCGCGCAGCTTGCCCTGCTGCGTCAGTTCGTCGAGCGTCGGCGCGAAG 
CGTTGGCCGATCTGGAAGTGCAGTTGGCCACCCTGCCGACCGAGCCGGCACAGCACGCGGAGAGTCTGCCAT 
GAACAACCCCGAGCGCTTGCCGTCCGAGACGCACAAACCGATCACCGGCTACCTGTGGGGCGGACTGGCTGT 
GCTGACTTGCCCCTGCCACCTGCCCATCCTCGCTGTCGTGCTGGCCGGCACAACCGCCGGTGCTTTCCTCGG 
CGAGCATTGGGTCATCGCGGCGCTCGGTTTGACCGGCCTGTTCCTTCTGTCCCTGTCGCGGGCGCTGCGGGC 
ATTCAGGGAAAGAGAATGAGCGCTTTCCGGCCGGATGGATGGACGACGCCGGAACTGGCCCAAGCGGTCGAG 
CGCGGGCAGCTTGAACTGCACTACCAGCCCGTCGTCGATCTGCGCAGTGGTGGGATTGTCGGCGCGGAAGCC 
CTGTTGCGCTGGCGTCATCCGACGCTTGGACTATTGCCACCGGGCCAGTTCCTGCCCGTGGTCGAATCGTCC 
GGCCTGATGCCTGAAATCGGCGCTTGGGTGCTGGGCGAAGCCTGCCGCCAGATGCGTGACTGGCGAATGCTG 
GCATGGCGACCGTTCCGGCTGGCCGTCAATGTTTCGGCGAGCCAAGTGGGACCGGACTTCGACGGGTGGGTA 
AAGGGCGTGCTGGCTGATGCCGAGTTGCCCGCCGAGTATCTCGAAATCGAGCTGACCGAATCGGTCGCGTTT 
GGTGATCCGGCGATCTTCCCCGCCCTGGACGCCTTGCGGCAGATCGGTGTGCGCTTCGCCGCCGATGACTTC 
GGGACGGGGTATTCCTGTCTGCAACATCTGAAGTGCTGCCCAATCAGCACGCTCAAGATCGACCAATCGTTT 
GTCGCCGGGCTCGCCAACGACCGCCGCGACCAAACCATCGTGCACACCGTGATTCAGCTTGCGCACGGGCTG 
GGCATGGATGTGGTGGCTGAAGGCGTGGAAACATCGGCGAGTCTTGATCTATTGCGACAAGCGGACTGCGAC 
ACAGGACAAGGCTTCCTGTTCGCGAAGCCAATGCCGGCGGCGGCATTCGCCGTCTTCGTCAGTCAATGGAGG 
GGTGCCACCATGAATGCAAGTGACTCGACCACCACCAGTTGCTGCGTGTGCTGCAAGGAAATCCCGCTCGAT 
GCCGCCTTCACCCCGGAAGGCGCGGAATACGTCGAGCACTTCTGCGGGTTGGAGTGTTATCAACGCTTCGAA 
GCGCGTGCCAAGACAGGGAACGAAACCGATGCCGATCCGAACGCCTGCGACTCGCTACCGTCAGATTGA