ViewGene
Locus Name:
GeneID:
Location:

GeneID:6444
TrivialName: PA14_15530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15530
PAO1 Ortholog Locus:
Sequence Length:276
Protein Length:91
Start: 1314094
Stop: 1314369
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK38011.1| (AF305549) entry exclusion protein TrbK [Comamonas testosteroni]
Identities = 37/64 (57%), Positives = 44/64 (68%), Gaps = 3/64 (4%)
Sequence:
ATGAAACCGACGATGCTGCTTGCCGGCCTCGTGGTGGCGCTGCTGGCCGGCTGCGACAGCAAGCCGGCCACC
CAGGCCATGCCCGAGGTCAATGACGCGAACTGCCAGATCGAGAAGATCAAAAAGATCGAGGACAAGGCGACG
CGCGAAACTTTCGCCGGGCTGTGCTCGCGCCGGTCGCGGACCGGCGGCGGCATCGCCCCGACCGAGAAGCCG
ATGAACTGGCTGGAACTGGCCGACCCGAAAGACTCGAAGGGGCAGGAGGCGAAGCCATGA
Translation:
MKPTMLLAGLVVALLAGCDSKPATQAMPEVNDANCQIEKIKKIEDKATRETFAGLCSRRSRTGGGIAPTEKP
MNWLELADPKDSKGQEAKP*
AnnotationID:6445GeneID:6444
AnnotatorUID: danlee
Modification Date/Time: 2005-10-18 14:02:36
Gene Name:
Confidence Code:3
GeneProduct:possible entry/exclusion protein TrbK
Cell Localization:()
Synonyms:trbK
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|77733993|emb|CAI10757.1|  TrbK protein [IncP-1beta multiresistance plasmid pB8]
gi|13661667|gb|AAK38011.1|  entry exclusion protein TrbK [Comamonas testosteroni]
gi|72384313|ref|YP_293666.1|  entry exclusion protein TrbK [Ralstonia eutropha JMP134]
gi|39777508|gb|AAR31083.1|  plasmid entry / exclusion [Wautersia eutropha]
gi|72123666|gb|AAZ65809.1|  entry exclusion protein TrbK [Ralstonia eutropha JMP134]
gi|34013321|dbj|BAC81994.1|  TrbK [Delftia acidovorans]
     Length=75
     Score = 75.1 bits (183),  Expect = 6e-13
     Identities = 37/64 (57%), Positives = 44/64 (68%), Gaps = 3/64 (4%)

gi|32455863|ref|NP_862516.1|  TrbK protein [Pseudomonas sp. ADP]
     Length=75
     Score = 73.6 bits (179),  Expect = 2e-12
     Identities = 36/64 (56%), Positives = 44/64 (68%), Gaps = 3/64 (4%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:12697




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16947




  
Author/Investigator(s):
        Tralau,T., Cook,A.M. and Ruff,J.





  
Title:
         Map of the IncP1beta plasmid pTSA encoding the widespread genes
            (tsa) for p-toluenesulfonate degradation in Comamonas testosteroni
            T-2




  
PubMed:
        11282598


MedLine:
        21178497




    
Source:
JOURNAL   Appl. Environ. Microbiol. 67 (4), 1508-1516 (2001)








    
Reference Type:Journal 







    
Data:


    		




 
URL:

















    ReferenceID:29993




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49446How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3639843Stop: 3639568

          
Length: 276


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAAACCGACGATGCTGCTTGCCGGCCTCGTGGTGGCGCTGCTGGCCGGCTGCGACAGCAAGCCGGCCACC 
CAGGCCATGCCCGAGGTCAATGACGCGAACTGCCAGATCGAGAAGATCAAAAAGATCGAGGACAAGGCGACG 
CGCGAAACTTTCGCCGGGCTGTGCTCGCGCCGGTCGCGGACCGGCGGCGGCATCGCCCCGACCGAGAAGCCG 
ATGAACTGGCTGGAACTGGCCGACCCGAAAGACTCGAAGGGGCAGGAGGCGAAGCCATGA