ViewGene

Locus Name:
GeneID:
Location:

GeneID:6425
TrivialName: PA14_16060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16060
PAO1 Ortholog Locus:
Sequence Length:1434
Protein Length:477
Start: 1369815
Stop: 1368382
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAC16169.1| (AF010496) potential outer membrane secretion protein [Rhodobacter capsulatus]
Identities = 78/315 (24%), Positives = 112/315 (35%), Gaps = 65/315 (20%)
Sequence:
ATGTTCAAAACCTTCGCTGTTGACGCGGGCCCGCGAACGGCGCCCGGCGTTCGATCAATTCAGTTGTTCGAC
ACGGATACGGACCACCGGCCCGGACACGCCTTCCAGCGCTTCCAGGGCGGCGATGGCATCGTTGATGCGTTG
TTCGATGACCCGGTGGGTAACCAGGATCATCGGCACCAGGCCGTCCTGTTCCTCGGCCTCCTTCTGCATGAT
CGATTCGATGTTGATGCCGCGCTCGGACAGGATGGTGGCCACCTGGGCCAGTACGCCCGGGTGGTCTTTGGC
CTGGATGCGCAGGTAGTAGGCGCTTTCGCAGGCTTCGATCGGCAGGATCGGGTGGTCGGACAGCGCGTCCGG
CTGGAATGCCAGGTGCGGTACGCGGTTCTCCGGATCGGAGGTCATGGCGCGGACCACGTCGACGAGGTCGGC
CACCACCGAGGAAGCGGTCGGCTCCATGCCGGCACCGGCGCCGTAGTAGAGGGTCGAGCCGACGGCGTCGCC
GTTGACCATCACCGCGTTCATCACGCCGTTGACGTTGGCGATCAGGCGATCCGAGGGAATCAGGGTCGGGTG
CACGCGCAGCTCGAAGCCGCTCTCGGTGCGACGCGCCACGCCCAGGTGCTTGATGCGATAGCCGAGGGCGTC
GGCGTAGTTGACGTCGGCGCTGGTCAGTTTCGAGATGCCTTCGGTGTAGGCCTTGTCGAACTGCAGCGGAAT
GCCGAAGGCGATCGAGGCGAGGATGGTCAGCTTGTGGGCGGCGTCGATGCCTTCCACGTCGAAGGTCGGGTC
GGCCTCGGCATAGCCCAGGGCCTGGGCCTCGGCGAGCACGTCGGGGAAGGTACGGCCCTTCTCGCGCATTTC
GCTGAGGATGAAGTTGCCGGTACCGTTGATGATCCCGGCCAGCCAGTTGATGCGGTTAGCCGACAGCCCCTC
GCGGATCGCCTTGATCACCGGGATGCCGCCGGCGACAGCGGCCTCGAAGGCGACGATCACGCCCTTCTCGCG
GGCCTTGGCGAAGATCTCGTTGCCGTGCACGGCGATCAGCGCCTTGTTCGCGGTGACCACGTGCTTGCCGTT
CTCGATGGCCTTGAGCACCAGCTCGTGGGCCAGGGTGTAGCCGCCGATCAACTCGACGACCACGTCGATCTC
GGGATTGCACGCTACGTCGAAGATATCGGCGGTGATGGGGGTCGCACCGGTATCGCACTTCGGGTTCGGCCG
GCGGGCGGCGATCTGCGCAACCTCGATACCGCGCCCGGCACGGCGGGCAATCTCCTCGGCGTTGCGTTTGAG
TACATTGAAGGTACCGCCACCGACGGTCCCCAACCCACAGATGCCTACTTTGACCGGTTTCACGCTGGAACT
CCCCATCTCACCTACGACGGCCGGACGCGCCGGCCTGCTATGGTTCCCCGATCGAATCGAGGTTGA
Translation:
MFKTFAVDAGPRTAPGVRSIQLFDTDTDHRPGHAFQRFQGGDGIVDALFDDPVGNQDHRHQAVLFLGLLLHD
RFDVDAALGQDGGHLGQYARVVFGLDAQVVGAFAGFDRQDRVVGQRVRLECQVRYAVLRIGGHGADHVDEVG
HHRGSGRLHAGTGAVVEGRADGVAVDHHRVHHAVDVGDQAIRGNQGRVHAQLEAALGATRHAQVLDAIAEGV
GVVDVGAGQFRDAFGVGLVELQRNAEGDRGEDGQLVGGVDAFHVEGRVGLGIAQGLGLGEHVGEGTALLAHF
AEDEVAGTVDDPGQPVDAVSRQPLADRLDHRDAAGDSGLEGDDHALLAGLGEDLVAVHGDQRLVRGDHVLAV
LDGLEHQLVGQGVAADQLDDHVDLGIARYVEDIGGDGGRTGIALRVRPAGGDLRNLDTAPGTAGNLLGVAFE
YIEGTATDGPQPTDAYFDRFHAGTPHLTYDGRTRRPAMVPRSNRG*
AnnotationID:6426GeneID:6425
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 08:08:35
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:12663
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29955
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49427How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 3584122Stop: 3585555
Length: 1434
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGTTCAAAACCTTCGCTGTTGACGCGGGCCCGCGAACGGCGCCCGGCGTTCGATCAATTCAGTTGTTCGAC
ACGGATACGGACCACCGGCCCGGACACGCCTTCCAGCGCTTCCAGGGCGGCGATGGCATCGTTGATGCGTTG
TTCGATGACCCGGTGGGTAACCAGGATCATCGGCACCAGGCCGTCCTGTTCCTCGGCCTCCTTCTGCATGAT
CGATTCGATGTTGATGCCGCGCTCGGACAGGATGGTGGCCACCTGGGCCAGTACGCCCGGGTGGTCTTTGGC
CTGGATGCGCAGGTAGTAGGCGCTTTCGCAGGCTTCGATCGGCAGGATCGGGTGGTCGGACAGCGCGTCCGG
CTGGAATGCCAGGTGCGGTACGCGGTTCTCCGGATCGGAGGTCATGGCGCGGACCACGTCGACGAGGTCGGC
CACCACCGAGGAAGCGGTCGGCTCCATGCCGGCACCGGCGCCGTAGTAGAGGGTCGAGCCGACGGCGTCGCC
GTTGACCATCACCGCGTTCATCACGCCGTTGACGTTGGCGATCAGGCGATCCGAGGGAATCAGGGTCGGGTG
CACGCGCAGCTCGAAGCCGCTCTCGGTGCGACGCGCCACGCCCAGGTGCTTGATGCGATAGCCGAGGGCGTC
GGCGTAGTTGACGTCGGCGCTGGTCAGTTTCGAGATGCCTTCGGTGTAGGCCTTGTCGAACTGCAGCGGAAT
GCCGAAGGCGATCGAGGCGAGGATGGTCAGCTTGTGGGCGGCGTCGATGCCTTCCACGTCGAAGGTCGGGTC
GGCCTCGGCATAGCCCAGGGCCTGGGCCTCGGCGAGCACGTCGGGGAAGGTACGGCCCTTCTCGCGCATTTC
GCTGAGGATGAAGTTGCCGGTACCGTTGATGATCCCGGCCAGCCAGTTGATGCGGTTAGCCGACAGCCCCTC
GCGGATCGCCTTGATCACCGGGATGCCGCCGGCGACAGCGGCCTCGAAGGCGACGATCACGCCCTTCTCGCG
GGCCTTGGCGAAGATCTCGTTGCCGTGCACGGCGATCAGCGCCTTGTTCGCGGTGACCACGTGCTTGCCGTT
CTCGATGGCCTTGAGCACCAGCTCGTGGGCCAGGGTGTAGCCGCCGATCAACTCGACGACCACGTCGATCTC
GGGATTGCACGCTACGTCGAAGATATCGGCGGTGATGGGGGTCGCACCGGTATCGCACTTCGGGTTCGGCCG
GCGGGCGGCGATCTGCGCAACCTCGATACCGCGCCCGGCACGGCGGGCAATCTCCTCGGCGTTGCGTTTGAG
TACATTGAAGGTACCGCCACCGACGGTCCCCAACCCACAGATGCCTACTTTGACCGGTTTCACGCTGGAACT
CCCCATCTCACCTACGACGGCCGGACGCGCCGGCCTGCTATGGTTCCCCGATCGAATCGAGGTTGA