ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6409

TrivialName: PA14_16810

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_16810

PAO1 Ortholog Locus:

Sequence Length: 3384

Protein Length: 1127

Start: 1441611

Stop: 1438228

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: emb|CAA22501.1| (AL939126) proline rich protein (putative membrane protein) [Streptomyces coelicolor A3(2)] Identities = 60/183 (32%), Positives = 64/183 (34%), Gaps = 16/183 (8%)

Sequence:

GTGCCAGCGATCCAGTCCATGGCTGATGTCCTGTTCGATCTGGTCCACCAGGATCACCGAGTTGCGCATGAT
CATGCCGGCCAGGGCGATGGTCCCGAGCATCGCCACGAAGCCGAACGGCTGGCGGAACAGCAGCAGGAACAG
GGTCACGCCGATCAGGCCCAGCGGTGCGGTGAGGAATACCATCGCCATCCGCGAGAAGCTGCGCAACTGCAC
CATCAGCAGGCTCAACACCACCACGATGAACAGCGGCACGCCAGCGTTCACCGAACTCTGGCCCTTCGCCGC
GTCCTCCACCGTTCCGCCCACCTCCAGCAGGTAGCCGTCCGGCAGCTCGGCGCGGATCGGTTCCAGGGTCGG
GGCGATCTGCGCGACCAGGGTCGCCGGCAGCGAATCGTCGTAGATATCGGCGCGCACGGTGACCGTCGGCAG
GCGGTTGCGGTGCCaaatGATCCCCTCTTCGAAACCGTATTCGAGCGTGGCGATCTGCGACAGCGCCACGCT
CCGGCCATTCTCGGTCGGCACCGCCAGGCTCGGCAGCAACGACAGGTCGCGACGCTCCTGCTCGGTGCCGCG
CAGGAGGATCTCGATCAGCTCGTTGTCTTCGCGGAAGAAGCTCACATGCGAACCGGTCAGCGCGCTCTGCAG
GAACTGCGACAGGCTGGCGGTGCTCACCCCCAGGGCACGGGCGCGCTCCTGGTCGATGCTCAGGTACACCAC
CTTGCTCGGCTCTTCCCAATCCAGGTGCACATTCACCACGTGCGGGTTCTCGCGCATCCTGTCGGCGACCTT
GCGCGCCAGTTCGCGAACCTGCGGGATGTCCTCGCCGGAAACCCGGAACTGCACCGGATAGCCCACCGGCGG
CCCGTTCTCCAGGCGACTGATGCGGCTGCGCAGGTGCGGGAAGTCCTCGTTCATCCGCTCGATCAGCCACTT
GCGCAGCGCCTCGCGGCTCTCCAGGTCCTTGGCCAGCACCACCACCTGGGCGAAGCTGGCCGCCGGCAACTG
CTGGTCCAGCGGCAGGTAGAAGCGGGGCGAGCCGGTGCCGACGTAGGCCACGTAGTTGTCGATGCCGTCATG
GCCCTGCAGCATTTTTTCCAGGCGCTGGACTTCCTCGCCGGTCGAGCGCAGCGAGGCGCCCTCGGCCAGCTT
GATGTCCAGCAGCAGCTCCAGGCGCGCCGAGGGCGGGAAGAACTGCTGCGGCACCAGGCGGAACAGCAGCAG
CGCGCCGACGAAGGCGGCGAGGGTCAGGACGATCACCGTCTTGCGGTAGCGCACGCACCACTCCACCAGACG
CCGGAAGCGCTGGTAGAAGGCCGTTGCATAGGGATCGTAGCCGTCGGCGCTGCCGCCGTGCTTCTGCGCGTG
CAGCCTGGCCAGGTCCGGCAGCAGCTTGGCCCCCAGGTAGGGAACGAAGACCACCGCGGCGAACCAGGAGAC
CACCAGGGCGATGGTCACCACCTgGAACAGCGAGCGGGTGTATTCGCCGGTGCCGGACTGCGCGGTGGCGAT
CGGCAGGAAGCCGGCGGCGGTGATCAGGGTGCCGGTGAGCATCGGGAAGGCGGTGCTGGTCCAGGCGAAGCT
GGCCGCCTTGAGGCGGTCGTAGCCCTGCTCCATCTTCACCGCCATCATCTCCACCGCGATGATCGCGTCGTC
CACCAGCAATCCCAGCGCCAGCACCAGGGCACCGAGGGAAATCTTGTGCAGGCCGATGCCGAAGTAATGCAT
GGCGGCGAAGGTCATCGCCAGCACCAGCGGGATCGACAGCGCCACCACCAGGCCTGTGCGCAGGCCGAGGGA
GAAGAAGCTCACCAGCAGGACGATCACCAGCGCCTCGGCCAGCACCCGGATGAACTCGCCGACCCCAGTACG
TACCGCCGCCGGCTGGTCGGACACCTTGCGCAGTTCCAGTCCGGCCGGCAGCGACTGCTGCAGGCGGGCGAA
CTCGGTTTCCAGGGCCTTACCCAGCACCAGGATGTCGCCGCCCGGCTTCATCGCTACCGCCAGGCCGATGGC
GTCCTCGCCCATGAAGCGCATGCGCGGCGCCGGCGGATCGTTGAAGCCGCGGCGAACCTCGGCCACGTCGCC
GATGCGGAAGGTGCGGTCGCCGACGCGGATGGGGAAGTCGCGGATCTCCTCCACCGAATCGAAACGCCCGGA
AACGCGCAATTGCACGCGGTCGCTGGCGGTCTCGAAGAACCCGGAGGAGGCCACCGCGTTCTGTTCCTCCAG
CGCCTTCTGCACCGCCGCCAGGGGCAGGCCGAGGGTGGCCAGCTTGGTGTTGGACAGGTCGATCCAGATCTT
CTCGTCCTGCAGGCCGATCAGTTCGACCTTGCCGACGTTCCTGATCCGCTGCAATTGCAGTTGCAGGCGGTC
GGCATAGTCCTTCATCACCGCATAGTCGAAGCCCTTGCCGGTGAGCGCATAGATGTTGCCGTAGGTGGTGCC
GAACTCGTCGTTGAAGAACGGGCCCTGGATGCTTTGCGGCAAGGTGGCGCGAATGTCGCTGATCTTCTTGCG
GATCTGGTACCAGAGTTCGGGGATCTCGCTGGAATGGATGTCCTCGCGGGCCATGAAGGTCACCTGCGAGAC
GCCGGGGCGGGAGAAGGACACGATGCGATCGTAGTCGCCGGTTTCCATCAGCTTCTTCTCGATACGCTCGGT
GACCTGCCGGGCCACCTCTTCGGCGCTGGCACCCGACCAGTTGGTCTGCACCACCATGGCCTTGAAGGTGAA
CGGCGGGTCTTCGCTCTGCCCCAGCTTGCTGTAGGACAGCGCGCCAACCGCGCCAAGCAGGATCATCAGGTA
CAGGACGATCTGGCGATTCTGCAACGCCCAGGCGGAAAGGTTGAAGGACATGCGACTACTCCTTGGCCGCCA
GTTTCACCGTGCGGTTGGCCCGGTCGATCGGACGCACCTGCTGCCCTTCGCGAAGCACCTGGACCCCGGTGG
CCACTACCCAGTCGCCAGCCTTCAGGCCTTCGAGCACCGGCACCCGGTCCTCGGCATAGGGACCGGTGCGCA
CCGGCTGCCGGCGCAGGGTCGAGCTGCCCGGTTCGACCACCCAGACGAACGCCTGGCCGGCCTCTGCGGTCA
GCGCCGACAAGGGAACCGATAACGGCACCGCCTCGGCGGCGGCGACGTAGACCCGGGCGCTCTGGCCCAGTT
CGGCCGGAGTCGCGCGGTCGTCGAAGGCCACCCGGGCGGCGAAGGTACGCGATTGCGGATCGGCCGCGGGCG
AGAGCTCGCGGATATGCCCGGCGAAGCGTCTGTCGCGTTGCGACCAGAGTTCGACCGACACCGGCTGGCCGA
TGCGGAAACGTTCGAAGCTGTGTTCCGGCAGGCCGATCAGCACCTCGCGCTCGCCGTCGGCGGCCAGGCTGA

Translation:

MPAIQSMADVLFDLVHQDHRVAHDHAGQGDGPEHRHEAERLAEQQQEQGHADQAQRCGEEYHRHPREAAQLH
HQQAQHHHDEQRHASVHRTLALRRVLHRSAHLQQVAVRQLGADRFQGRGDLRDQGRRQRIVVDIGAHGDRRQ
AVAVPNDPLFETVFERGDLRQRHAPAILGRHRQARQQRQVATLLLGAAQEDLDQLVVFAEEAHMRTGQRALQ
ELRQAGGAHPQGTGALLVDAQVHHLARLFPIQVHIHHVRVLAHPVGDLARQFANLRDVLAGNPELHRIAHRR
PVLQATDAAAQVREVLVHPLDQPLAQRLAALQVLGQHHHLGEAGRRQLLVQRQVEAGRAGADVGHVVVDAVM
ALQHFFQALDFLAGRAQRGALGQLDVQQQLQARRGREELLRHQAEQQQRADEGGEGQDDHRLAVAHAPLHQT
PEALVEGRCIGIVAVGAAAVLLRVQPGQVRQQLGPQVGNEDHRGEPGDHQGDGHHLEQRAGVFAGAGLRGGD
RQEAGGGDQGAGEHREGGAGPGEAGRLEAVVALLHLHRHHLHRDDRVVHQQSQRQHQGTEGNLVQADAEVMH
GGEGHRQHQRDRQRHHQACAQAEGEEAHQQDDHQRLGQHPDELADPSTYRRRLVGHLAQFQSGRQRLLQAGE
LGFQGLTQHQDVAARLHRYRQADGVLAHEAHARRRRIVEAAANLGHVADAEGAVADADGEVADLLHRIETPG
NAQLHAVAGGLEEPGGGHRVLFLQRLLHRRQGQAEGGQLGVGQVDPDLLVLQADQFDLADVPDPLQLQLQAV
GIVLHHRIVEALAGERIDVAVGGAELVVEERALDALRQGGANVADLLADLVPEFGDLAGMDVLAGHEGHLRD
AGAGEGHDAIVVAGFHQLLLDTLGDLPGHLFGAGTRPVGLHHHGLEGERRVFALPQLAVGQRANRAKQDHQV
QDDLAILQRPGGKVEGHATTPWPPVSPCGWPGRSDAPAALREAPGPRWPLPSRQPSGLRAPAPGPRHRDRCA
PAAGAGSSCPVRPPRRTPGRPLRSAPTREPITAPPRRRRRRPGRSGPVRPESRGRRRPPGRRRYAIADRPRA
RARGYARRSVCRVATRVRPTPAGRCGNVRSCVPAGRSAPRARRRRPG*

AnnotationID:6410 GeneID:6409

AnnotatorUID: diggins

Modification Date/Time: 2004-04-26 17:05:22

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16195

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29925

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:31870

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6409_cdd.html

URL:

GC ORFID: `49411`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `3512326`	Stop: `3515709`
Length: `3384`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGCCAGCGATCCAGTCCATGGCTGATGTCCTGTTCGATCTGGTCCACCAGGATCACCGAGTTGCGCATGAT CATGCCGGCCAGGGCGATGGTCCCGAGCATCGCCACGAAGCCGAACGGCTGGCGGAACAGCAGCAGGAACAG GGTCACGCCGATCAGGCCCAGCGGTGCGGTGAGGAATACCATCGCCATCCGCGAGAAGCTGCGCAACTGCAC CATCAGCAGGCTCAACACCACCACGATGAACAGCGGCACGCCAGCGTTCACCGAACTCTGGCCCTTCGCCGC GTCCTCCACCGTTCCGCCCACCTCCAGCAGGTAGCCGTCCGGCAGCTCGGCGCGGATCGGTTCCAGGGTCGG GGCGATCTGCGCGACCAGGGTCGCCGGCAGCGAATCGTCGTAGATATCGGCGCGCACGGTGACCGTCGGCAG GCGGTTGCGGTGCCaaatGATCCCCTCTTCGAAACCGTATTCGAGCGTGGCGATCTGCGACAGCGCCACGCT CCGGCCATTCTCGGTCGGCACCGCCAGGCTCGGCAGCAACGACAGGTCGCGACGCTCCTGCTCGGTGCCGCG CAGGAGGATCTCGATCAGCTCGTTGTCTTCGCGGAAGAAGCTCACATGCGAACCGGTCAGCGCGCTCTGCAG GAACTGCGACAGGCTGGCGGTGCTCACCCCCAGGGCACGGGCGCGCTCCTGGTCGATGCTCAGGTACACCAC CTTGCTCGGCTCTTCCCAATCCAGGTGCACATTCACCACGTGCGGGTTCTCGCGCATCCTGTCGGCGACCTT GCGCGCCAGTTCGCGAACCTGCGGGATGTCCTCGCCGGAAACCCGGAACTGCACCGGATAGCCCACCGGCGG CCCGTTCTCCAGGCGACTGATGCGGCTGCGCAGGTGCGGGAAGTCCTCGTTCATCCGCTCGATCAGCCACTT GCGCAGCGCCTCGCGGCTCTCCAGGTCCTTGGCCAGCACCACCACCTGGGCGAAGCTGGCCGCCGGCAACTG CTGGTCCAGCGGCAGGTAGAAGCGGGGCGAGCCGGTGCCGACGTAGGCCACGTAGTTGTCGATGCCGTCATG GCCCTGCAGCATTTTTTCCAGGCGCTGGACTTCCTCGCCGGTCGAGCGCAGCGAGGCGCCCTCGGCCAGCTT GATGTCCAGCAGCAGCTCCAGGCGCGCCGAGGGCGGGAAGAACTGCTGCGGCACCAGGCGGAACAGCAGCAG CGCGCCGACGAAGGCGGCGAGGGTCAGGACGATCACCGTCTTGCGGTAGCGCACGCACCACTCCACCAGACG CCGGAAGCGCTGGTAGAAGGCCGTTGCATAGGGATCGTAGCCGTCGGCGCTGCCGCCGTGCTTCTGCGCGTG CAGCCTGGCCAGGTCCGGCAGCAGCTTGGCCCCCAGGTAGGGAACGAAGACCACCGCGGCGAACCAGGAGAC CACCAGGGCGATGGTCACCACCTgGAACAGCGAGCGGGTGTATTCGCCGGTGCCGGACTGCGCGGTGGCGAT CGGCAGGAAGCCGGCGGCGGTGATCAGGGTGCCGGTGAGCATCGGGAAGGCGGTGCTGGTCCAGGCGAAGCT GGCCGCCTTGAGGCGGTCGTAGCCCTGCTCCATCTTCACCGCCATCATCTCCACCGCGATGATCGCGTCGTC CACCAGCAATCCCAGCGCCAGCACCAGGGCACCGAGGGAAATCTTGTGCAGGCCGATGCCGAAGTAATGCAT GGCGGCGAAGGTCATCGCCAGCACCAGCGGGATCGACAGCGCCACCACCAGGCCTGTGCGCAGGCCGAGGGA GAAGAAGCTCACCAGCAGGACGATCACCAGCGCCTCGGCCAGCACCCGGATGAACTCGCCGACCCCAGTACG TACCGCCGCCGGCTGGTCGGACACCTTGCGCAGTTCCAGTCCGGCCGGCAGCGACTGCTGCAGGCGGGCGAA CTCGGTTTCCAGGGCCTTACCCAGCACCAGGATGTCGCCGCCCGGCTTCATCGCTACCGCCAGGCCGATGGC GTCCTCGCCCATGAAGCGCATGCGCGGCGCCGGCGGATCGTTGAAGCCGCGGCGAACCTCGGCCACGTCGCC GATGCGGAAGGTGCGGTCGCCGACGCGGATGGGGAAGTCGCGGATCTCCTCCACCGAATCGAAACGCCCGGA AACGCGCAATTGCACGCGGTCGCTGGCGGTCTCGAAGAACCCGGAGGAGGCCACCGCGTTCTGTTCCTCCAG CGCCTTCTGCACCGCCGCCAGGGGCAGGCCGAGGGTGGCCAGCTTGGTGTTGGACAGGTCGATCCAGATCTT CTCGTCCTGCAGGCCGATCAGTTCGACCTTGCCGACGTTCCTGATCCGCTGCAATTGCAGTTGCAGGCGGTC GGCATAGTCCTTCATCACCGCATAGTCGAAGCCCTTGCCGGTGAGCGCATAGATGTTGCCGTAGGTGGTGCC GAACTCGTCGTTGAAGAACGGGCCCTGGATGCTTTGCGGCAAGGTGGCGCGAATGTCGCTGATCTTCTTGCG GATCTGGTACCAGAGTTCGGGGATCTCGCTGGAATGGATGTCCTCGCGGGCCATGAAGGTCACCTGCGAGAC GCCGGGGCGGGAGAAGGACACGATGCGATCGTAGTCGCCGGTTTCCATCAGCTTCTTCTCGATACGCTCGGT GACCTGCCGGGCCACCTCTTCGGCGCTGGCACCCGACCAGTTGGTCTGCACCACCATGGCCTTGAAGGTGAA CGGCGGGTCTTCGCTCTGCCCCAGCTTGCTGTAGGACAGCGCGCCAACCGCGCCAAGCAGGATCATCAGGTA CAGGACGATCTGGCGATTCTGCAACGCCCAGGCGGAAAGGTTGAAGGACATGCGACTACTCCTTGGCCGCCA GTTTCACCGTGCGGTTGGCCCGGTCGATCGGACGCACCTGCTGCCCTTCGCGAAGCACCTGGACCCCGGTGG CCACTACCCAGTCGCCAGCCTTCAGGCCTTCGAGCACCGGCACCCGGTCCTCGGCATAGGGACCGGTGCGCA CCGGCTGCCGGCGCAGGGTCGAGCTGCCCGGTTCGACCACCCAGACGAACGCCTGGCCGGCCTCTGCGGTCA GCGCCGACAAGGGAACCGATAACGGCACCGCCTCGGCGGCGGCGACGTAGACCCGGGCGCTCTGGCCCAGTT CGGCCGGAGTCGCGCGGTCGTCGAAGGCCACCCGGGCGGCGAAGGTACGCGATTGCGGATCGGCCGCGGGCG AGAGCTCGCGGATATGCCCGGCGAAGCGTCTGTCGCGTTGCGACCAGAGTTCGACCGACACCGGCTGGCCGA TGCGGAAACGTTCGAAGCTGTGTTCCGGCAGGCCGATCAGCACCTCGCGCTCGCCGTCGGCGGCCAGGCTGA