ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6407

TrivialName: PA14_16900

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_16900

PAO1 Ortholog Locus:

Sequence Length: 1698

Protein Length: 565

Start: 1448283

Stop: 1449980

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK53451.1| (AY032926) putative PHA synthase [Streptomyces aureofaciens] Identities = 125/385 (32%), Positives = 140/385 (36%), Gaps = 67/385 (17%)

Sequence:

GTGGATGGTCATGGAGGAAATCCGCCAGCAATTCGACCTGCGCAGCCTCAAGAGCGATGCCACGGAAATCCC
GCCGGAGGTCTCGGTGCTGCTGCTGGTGCATCCCAAGCAGTTACCCGAGCAGACGCTATACGCCATCGACCA
GTTCGTCCTGCGCGGGGGCAAGCTGCTGGCGTTCGTCGACCCCTTCAGCGAGGCCGACAGCGGCAGCGATTT
CGCCGCTACGCTGGATGGCGACAAGTCGTCCGACCTCGCGCCGCTGTTCGAGGCCTGGGGGCTGCGCCTGCT
GCCGGGCAAGGTGCTCGGCGACGGCGCCTATGCGATGTCCATCAGTCTTGGCCGGGACCAGCGTCCGGCCCG
GCATCCGGCCTGGCTCAGCTTGCCGCGCGAGGCGCTGGACCAGGACGACATCGCCACTGCCGGCCTGGAAAG
CCTGACCCTGGCGACGCCCGGCATCCTCGAAAGGCTCCCCGGAGCGAGCACCAGCTTCACGCCTTTGCTGCA
AAGCTCGGCCCAGGCGATGCCGTTCGATGCCTCGCGCTTCGGCCTGCTGCGCGACCCCGGCGATCTGATGCG
CGAGCTGCGCCCGAGCGGCCGGCGGCATACTCTCGCCGCCCGTATCCAGGGGCCGGCGAAGAGTGCCTTCGC
GGAGGGCATCGAGGGGCATCGCGAAGGCCTGAAGGAGGCGCGCAACATCAATGTCATCGTCGTGGCCGATAC
CGACCTGCTCAGCGATCGCATGTGGGTCCAGGTGCAGGACTTCTTCGGCCAGCGCGTGCCGCAGCCCTGGGC
CGACAACGGCGCGCTGGTGGTCAACGCGCTGGACAACCTGTCGGGCACCGACGCGCTGATCAGCGTGCGCTC
CCGCGGCCGGTTCAGCCGGCCGTTCGTGGTGGTCGAGCGCCTGCAGCGCGAGGCCGAGACGAGCTTCCGGCA
GAAGGAGGAGCAGCTCAAGCAGCGCCTCGCCGATACCGAGCAGCAACTCGCCGCCCTACAGCAGGGTGCCGA
CCCGGAGAAGGCCGTCGAACTGACGCCCGAACAGCAGGCCACGGTGCGCCAGTACATGCAGGAGAAGCTGCG
CATCCGCAAGGAGCTGCGCGAGGTGCAGTACCAGTTGAACGCCGATATCGACGCACTGGGCCGCACCCTGAA
GCTGGTCAATATCGCCCTGGTTCCCTCGTTGCTCACGGTCGGCGTGCTGCTCGGCTGGCTCTGGCGGCGCCG
GCGCATGGCCCGGGGAGGGCATTGACGCATGCGGCGCAATACGCTGATCGTCCTGCTGGCGCTGGTGGCGGC
GCTGGCCGGAACcTTCGCCTGGCTGCAGCGCGAGCGCGCAGCCGAGGTACCTGCCTTGCCGGCGGCAGAGCG
CTGGCTGCCGGAACTGGACAGCGCGACGCTGAGTGGTCTGCACATGCAGTTTGCCGACGGTTCGCCGGATAT
CCGGGTCGAGCGGCGTGCGGGCGCGTGGGTCCTGCCGGCCAAGGCCGACTATCCGGCCGACCGGCTACGCTT
GTCGGCGCTGCTCGAGGCGTTGGCAGAGGCGCGCAAGGTCGAGGCGAAGAGCGCCAACCCGAAGAACCACGC
GCTGCTTGGCCTGGCGGAGCGTGGCGAGGGGCAGGCGCTACGCCTGAGCCTGCATTGGCAGTCCGGCGAGTC
TCTGGTGCTGCTGGTGGGCAAGGATGCGCAGCATGGCGGTAG

Translation:

MDGHGGNPPAIRPAQPQERCHGNPAGGLGAAAGASQAVTRADAIRHRPVRPARGQAAGVRRPLQRGRQRQRF
RRYAGWRQVVRPRAAVRGLGAAPAAGQGARRRRLCDVHQSWPGPASGPASGLAQLAARGAGPGRHRHCRPGK
PDPGDARHPRKAPRSEHQLHAFAAKLGPGDAVRCLALRPAARPRRSDARAAPERPAAYSRRPYPGAGEECLR
GGHRGASRRPEGGAQHQCHRRGRYRPAQRSHVGPGAGLLRPARAAALGRQRRAGGQRAGQPVGHRRADQRAL
PRPVQPAVRGGRAPAARGRDELPAEGGAAQAAPRRYRAATRRPTAGCRPGEGRRTDARTAGHGAPVHAGEAA
HPQGAARGAVPVERRYRRTGPHPEAGQYRPGSLVAHGRRAARLALAAPAHGPGRALTHAAQYADRPAGAGGG
AGRNLRLAAARARSRGTCLAGGRALAAGTGQRDAEWSAHAVCRRFAGYPGRAACGRVGPAGQGRLSGRPATL
VGAARGVGRGAQGRGEERQPEEPRAAWPGGAWRGAGATPEPALAVRRVSGAAGGQGCAAWR*

AnnotationID:6408 GeneID:6407

AnnotatorUID: diggins

Modification Date/Time: 2004-04-26 17:05:11

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16193

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29921

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:31876

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6407_cdd.html

URL:

GC ORFID: `49409`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `3505654`	Stop: `3503957`
Length: `1698`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGGATGGTCATGGAGGAAATCCGCCAGCAATTCGACCTGCGCAGCCTCAAGAGCGATGCCACGGAAATCCC GCCGGAGGTCTCGGTGCTGCTGCTGGTGCATCCCAAGCAGTTACCCGAGCAGACGCTATACGCCATCGACCA GTTCGTCCTGCGCGGGGGCAAGCTGCTGGCGTTCGTCGACCCCTTCAGCGAGGCCGACAGCGGCAGCGATTT CGCCGCTACGCTGGATGGCGACAAGTCGTCCGACCTCGCGCCGCTGTTCGAGGCCTGGGGGCTGCGCCTGCT GCCGGGCAAGGTGCTCGGCGACGGCGCCTATGCGATGTCCATCAGTCTTGGCCGGGACCAGCGTCCGGCCCG GCATCCGGCCTGGCTCAGCTTGCCGCGCGAGGCGCTGGACCAGGACGACATCGCCACTGCCGGCCTGGAAAG CCTGACCCTGGCGACGCCCGGCATCCTCGAAAGGCTCCCCGGAGCGAGCACCAGCTTCACGCCTTTGCTGCA AAGCTCGGCCCAGGCGATGCCGTTCGATGCCTCGCGCTTCGGCCTGCTGCGCGACCCCGGCGATCTGATGCG CGAGCTGCGCCCGAGCGGCCGGCGGCATACTCTCGCCGCCCGTATCCAGGGGCCGGCGAAGAGTGCCTTCGC GGAGGGCATCGAGGGGCATCGCGAAGGCCTGAAGGAGGCGCGCAACATCAATGTCATCGTCGTGGCCGATAC CGACCTGCTCAGCGATCGCATGTGGGTCCAGGTGCAGGACTTCTTCGGCCAGCGCGTGCCGCAGCCCTGGGC CGACAACGGCGCGCTGGTGGTCAACGCGCTGGACAACCTGTCGGGCACCGACGCGCTGATCAGCGTGCGCTC CCGCGGCCGGTTCAGCCGGCCGTTCGTGGTGGTCGAGCGCCTGCAGCGCGAGGCCGAGACGAGCTTCCGGCA GAAGGAGGAGCAGCTCAAGCAGCGCCTCGCCGATACCGAGCAGCAACTCGCCGCCCTACAGCAGGGTGCCGA CCCGGAGAAGGCCGTCGAACTGACGCCCGAACAGCAGGCCACGGTGCGCCAGTACATGCAGGAGAAGCTGCG CATCCGCAAGGAGCTGCGCGAGGTGCAGTACCAGTTGAACGCCGATATCGACGCACTGGGCCGCACCCTGAA GCTGGTCAATATCGCCCTGGTTCCCTCGTTGCTCACGGTCGGCGTGCTGCTCGGCTGGCTCTGGCGGCGCCG GCGCATGGCCCGGGGAGGGCATTGACGCATGCGGCGCAATACGCTGATCGTCCTGCTGGCGCTGGTGGCGGC GCTGGCCGGAACcTTCGCCTGGCTGCAGCGCGAGCGCGCAGCCGAGGTACCTGCCTTGCCGGCGGCAGAGCG CTGGCTGCCGGAACTGGACAGCGCGACGCTGAGTGGTCTGCACATGCAGTTTGCCGACGGTTCGCCGGATAT CCGGGTCGAGCGGCGTGCGGGCGCGTGGGTCCTGCCGGCCAAGGCCGACTATCCGGCCGACCGGCTACGCTT GTCGGCGCTGCTCGAGGCGTTGGCAGAGGCGCGCAAGGTCGAGGCGAAGAGCGCCAACCCGAAGAACCACGC GCTGCTTGGCCTGGCGGAGCGTGGCGAGGGGCAGGCGCTACGCCTGAGCCTGCATTGGCAGTCCGGCGAGTC TCTGGTGCTGCTGGTGGGCAAGGATGCGCAGCATGGCGGTAG