ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6405

TrivialName: PA14_17020

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_17020

PAO1 Ortholog Locus:

Sequence Length: 1680

Protein Length: 559

Start: 1458015

Stop: 1456336

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens] Identities = 85/311 (27%), Positives = 114/311 (36%), Gaps = 70/311 (22%)

Sequence:

GTGCGTCGAAGCCGCCGAGCGCATCCGCGACTACCTGCGGGCGCGCTGAAGCCTGCGCGGAGAAACGAAAAG
GGATCGCCGCGGCGATCCCTTTTTCGTTCACACCCAGCGGGCGAAGCGATTGGTCAGCCAGCTTTCCTGCTG
GTCCAGCTCGCGCAGGATATCGCCCAGGGTCTCGTCGTCGATCTCGTTGTTACGCCGCTGCCGGTACAGTTC
CAGGCGCTGCGCGCGCAACGCCTTCAGGCGCAAGGCCTTGTCGGCGATCTCCAGGGCTTGGGCCTGGTCGCG
GGCCTCATCGGTGGTCGGTGCGGTATCCAGCGACTGGCGGTATTCAGCCATAATCTGCGCACGCGCCTCGGC
GACCCGCGAAGTATTCGCCGCATCGTTGCCTTCCACCTGCGGCAGTTCCTCGCTCTCCAGGGCCCGGATCGC
CGCCTCCGCGGTCTTGCGCCAGGCCTCGCGCCGCTCGCGCTCGTGGGCGCCATTGTTGCTCGCCGGCAGCCC
GCGCAGCAGCAGCGGCAGGCCGATGGTCGCGCCGATCAGGGAAATCAGGATCACGCTGGTGGCGATGAAGAT
GATCAGGTCGCGCTGCGGGAAGGCGCTGCCATCCATCAGGCTCATCGGTACCGACAGCACCGCCGCCAGGGT
CACCGCACCACGCACGCCGCTCAATGCACTGAGGGCGGAGAGACGGCGCAGGGAGATGCCGCTCAGCCCGGG
CGGGCTCTTGCCGCGCCAGCGGTCGATGCGCAGCGACAACTTCCAGTAGCCATAGACCCAGCCGTAGCGGAT
CAGCATCAGCACGGCGGTGATCGCCGCCACGTAGGCCAGCAGCAGCGAGGAACGCCAGAGCAGGTCGCCGTG
GTGGTTGGCCACCGACTTCATGATGTCCGGCAACTGCAGGCCGAGCAGCAGGAACACCACGCCGTTGAAGGC
GAACTCCAGCATCGACCAGACGCTGCGGTTGAGCAGGCGCGTGGAAGTCTGCCGCGGCAGCAGGTCGACCCA
GCTCTGCATCATGCCGGCCGCCACCGCCGAGAGAATCCCGGAGACGCCCAGGTGTTCCGCCACCATGTAGGA
GGCGAACGGCAGCAACAGCATCAGTACCACGTGGGTCGCCGGGTCGTCCCAACCACGGGAGATCATCCAGGC
GCGGATGCGGCCCAGCGACCAGCTGAGGAACACCCCGATGGCCAGGCCGCCGACCGCGACCAGGAGGAAGTT
GAGGCTGGCGTCCACCAGCGAGAACACGCCGGTCATCGCCGCGGCGATGGCGAACTTGAATGCCACCAGGCC
AGAGGCATCGTTCATCAGCGCCTCGCCCTCCAGCAGGTGCATCAGGCGCTTGGGCAGCCGCCCCTGGGTGAT
CGCCGAGACCGCCAGGGCGTCCGTGGGCGACAGCACGGCGGCGAGGGCGAAGGAAGCCGCCAGGGGAATTTC
CGGGATCAGCAGGTGGATGAAATAGCCGGCGCCGACCACGGTGAAGAACACCAGGCCGAACGCCATCATCAG
GATCGGCCAGCGCATCCGCCAGACTTCCCGCTTGGGAATGCGCCAGCCATCGACGAACAGCAGCGGCGGAAT
GAACAGGAAGAGGAACAGCTCCGGGTCGAGGGCAATGTGCAGCCCGAGGGACGGCAAGGCCAGCAGGGCCCC
GGCGGCGATCTGGATCAGCGGTAG

Translation:

MRRSRRAHPRLPAGALKPARRNEKGSPRRSLFRSHPAGEAIGQPAFLLVQLAQDIAQGLVVDLVVTPLPVQF
QALRAQRLQAQGLVGDLQGLGLVAGLIGGRCGIQRLAVFSHNLRTRLGDPRSIRRIVAFHLRQFLALQGPDR
RLRGLAPGLAPLALVGAIVARRQPAQQQRQADGRADQGNQDHAGGDEDDQVALREGAAIHQAHRYRQHRRQG
HRTTHAAQCTEGGETAQGDAAQPGRALAAPAVDAQRQLPVAIDPAVADQHQHGGDRRHVGQQQRGTPEQVAV
VVGHRLHDVRQLQAEQQEHHAVEGELQHRPDAAVEQARGSLPRQQVDPALHHAGRHRRENPGDAQVFRHHVG
GERQQQHQYHVGRRVVPTTGDHPGADAAQRPAEEHPDGQAADRDQEEVEAGVHQREHAGHRRGDGELECHQA
RGIVHQRLALQQVHQALGQPPLGDRRDRQGVRGRQHGGEGEGSRQGNFRDQQVDEIAGADHGEEHQAERHHQ
DRPAHPPDFPLGNAPAIDEQQRRNEQEEEQLRVEGNVQPEGRQGQQGPGGDLDQR*

AnnotationID:6406 GeneID:6405

AnnotatorUID: diggins

Modification Date/Time: 2004-04-26 18:06:57

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16191

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29917

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:31882

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6405_cdd.html

URL:

GC ORFID: `49407`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `3495922`	Stop: `3497601`
Length: `1680`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGCGTCGAAGCCGCCGAGCGCATCCGCGACTACCTGCGGGCGCGCTGAAGCCTGCGCGGAGAAACGAAAAG GGATCGCCGCGGCGATCCCTTTTTCGTTCACACCCAGCGGGCGAAGCGATTGGTCAGCCAGCTTTCCTGCTG GTCCAGCTCGCGCAGGATATCGCCCAGGGTCTCGTCGTCGATCTCGTTGTTACGCCGCTGCCGGTACAGTTC CAGGCGCTGCGCGCGCAACGCCTTCAGGCGCAAGGCCTTGTCGGCGATCTCCAGGGCTTGGGCCTGGTCGCG GGCCTCATCGGTGGTCGGTGCGGTATCCAGCGACTGGCGGTATTCAGCCATAATCTGCGCACGCGCCTCGGC GACCCGCGAAGTATTCGCCGCATCGTTGCCTTCCACCTGCGGCAGTTCCTCGCTCTCCAGGGCCCGGATCGC CGCCTCCGCGGTCTTGCGCCAGGCCTCGCGCCGCTCGCGCTCGTGGGCGCCATTGTTGCTCGCCGGCAGCCC GCGCAGCAGCAGCGGCAGGCCGATGGTCGCGCCGATCAGGGAAATCAGGATCACGCTGGTGGCGATGAAGAT GATCAGGTCGCGCTGCGGGAAGGCGCTGCCATCCATCAGGCTCATCGGTACCGACAGCACCGCCGCCAGGGT CACCGCACCACGCACGCCGCTCAATGCACTGAGGGCGGAGAGACGGCGCAGGGAGATGCCGCTCAGCCCGGG CGGGCTCTTGCCGCGCCAGCGGTCGATGCGCAGCGACAACTTCCAGTAGCCATAGACCCAGCCGTAGCGGAT CAGCATCAGCACGGCGGTGATCGCCGCCACGTAGGCCAGCAGCAGCGAGGAACGCCAGAGCAGGTCGCCGTG GTGGTTGGCCACCGACTTCATGATGTCCGGCAACTGCAGGCCGAGCAGCAGGAACACCACGCCGTTGAAGGC GAACTCCAGCATCGACCAGACGCTGCGGTTGAGCAGGCGCGTGGAAGTCTGCCGCGGCAGCAGGTCGACCCA GCTCTGCATCATGCCGGCCGCCACCGCCGAGAGAATCCCGGAGACGCCCAGGTGTTCCGCCACCATGTAGGA GGCGAACGGCAGCAACAGCATCAGTACCACGTGGGTCGCCGGGTCGTCCCAACCACGGGAGATCATCCAGGC GCGGATGCGGCCCAGCGACCAGCTGAGGAACACCCCGATGGCCAGGCCGCCGACCGCGACCAGGAGGAAGTT GAGGCTGGCGTCCACCAGCGAGAACACGCCGGTCATCGCCGCGGCGATGGCGAACTTGAATGCCACCAGGCC AGAGGCATCGTTCATCAGCGCCTCGCCCTCCAGCAGGTGCATCAGGCGCTTGGGCAGCCGCCCCTGGGTGAT CGCCGAGACCGCCAGGGCGTCCGTGGGCGACAGCACGGCGGCGAGGGCGAAGGAAGCCGCCAGGGGAATTTC CGGGATCAGCAGGTGGATGAAATAGCCGGCGCCGACCACGGTGAAGAACACCAGGCCGAACGCCATCATCAG GATCGGCCAGCGCATCCGCCAGACTTCCCGCTTGGGAATGCGCCAGCCATCGACGAACAGCAGCGGCGGAAT GAACAGGAAGAGGAACAGCTCCGGGTCGAGGGCAATGTGCAGCCCGAGGGACGGCAAGGCCAGCAGGGCCCC GGCGGCGATCTGGATCAGCGGTAG