ViewGene

Locus Name:
GeneID:
Location:

GeneID:6404
TrivialName: PA14_17090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17090
PAO1 Ortholog Locus:
Sequence Length:1398
Protein Length:465
Start: 1467020
Stop: 1465623
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
GTGCTTGAAGTCGGGCCAGAACAGGTCGGAGAAATACAGCTCGGCGTAGGCCAGCTGCCAGAGAAGGAAATT
GCTGATGCGATGCTCGCCGCCGGTGCGGATGCACAGGTCGGGCAGCGGCTGGTCGCCGGTCACCAGGCAACC
CTGGAGCAGCTCGGCGGAGATATCGTCCGCCGCCAGGTGCCCGCCCTGGACCTCGCGCGCCAGGCGCTGTGC
GGCCTGGACGATGTCCCACTGGCCGCCGTAGTTGGCGGCGACCTGGAGGAGGAAACGGGTATTGCTGGCAGT
GGCGGCTTCCGCTTCGCGCATGGCCGCCTGCAACTCCGGATGGAAACGCGTGCGATCGCCGATGATGCGCAG
GCGGATGCCGTTCTCGTCGAGCTTGCGCACCTCGCGGCGCAGGGCCACGAGAAACAGTTCCATCAGCGCGCT
GACTTCGTCCGCCGGACGCTGCCAGTTCTCGCTGGAGAACGCGAACAGGGTGAGGACCTCGACCCCTGCCTC
GGCGCAGACCTCGATCACCGCCCTGACGGCATCGACACCGGCCTTGTGGCCGGCGACGCCGGGCAGAAGACG
CTTCTTCGCCCAGCGATTGTTACCGTCCATGATAATGGCCACGTGGCGTGGCACGCACACATCCTTCCGGGT
CTTTTCCATGACGTCAGCCCGGCCTCAGACAGCCATGAGGTCCGCTTCTTTGGCTTCCAGTGCCTTCTCGAT
CTCACCGATGAACTTGTCGGTCAGCTTCTGCACGTCGTCGCCGGCGCGGCGCTCttCGTCCTCGCTGATTTC
CTTTTCCTTCTGCAGGTCCTTCAACTGGGCCAGCGCATCGCGACGGATGTTGCGCACGGAAACCCGCGCCTG
CTCGGCCTCGGCACGCGCCTGCTTGGTGTAGCCCTTGCGGGTCTCCTCGGTCAGGGCCGGCATCGGTACGCG
GATGGTGGTGCCGGCGGTGGCCGGGTTGAGCCCCAGGTCGGAGGTCATGATgGCCTTCTCGACCGCCTgGAT
CATGCTCTTGTCGAACACGGCCAGGGCCAGGGTGCGGGAGTCTTCCACGGTGACGTTGGCGACCTGGCGCAG
CGGCGTATCGGCACCGTAATAGGAAACCATCACGCTATCCAGGATGCTCGGATGCGCGCGACCGGTGCGAAT
CTTCGCGAAGGCATGGCCCAGCGCTTCCAGGGTCTTGCCCATGCGCTCCTGCGCTTCCTTCTTGATCTCGTT
GATCATTCTCAACCCTCCTCGATCAGGGTGCCTTCGGCACCACCAACAACAATATTCAGCAATGCGCCCGGC
TTGTTCATGTTGAACACCCGCAGCGGCATGTTCTGGTCACGGCACAGGCAGATGGCGGTCAGGTCCATCACG
CCGAGCTTGCGATCGAGCACTTCATCATAG
Translation:
MLEVGPEQVGEIQLGVGQLPEKEIADAMLAAGADAQVGQRLVAGHQATLEQLGGDIVRRQVPALDLARQALC
GLDDVPLAAVVGGDLEEETGIAGSGGFRFAHGRLQLRMETRAIADDAQADAVLVELAHLAAQGHEKQFHQRA
DFVRRTLPVLAGEREQGEDLDPCLGADLDHRPDGIDTGLVAGDAGQKTLLRPAIVTVHDNGHVAWHAHILPG
LFHDVSPASDSHEVRFFGFQCLLDLTDELVGQLLHVVAGAALFVLADFLFLLQVLQLGQRIATDVAHGNPRL
LGLGTRLLGVALAGLLGQGRHRYADGGAGGGRVEPQVGGHDGLLDRLDHALVEHGQGQGAGVFHGDVGDLAQ
RRIGTVIGNHHAIQDARMRATGANLREGMAQRFQGLAHALLRFLLDLVDHSQPSSIRVPSAPPTTIFSNAPG
LFMLNTRSGMFWSRHRQMAVRSITPSLRSSTSS*
AnnotationID:6405GeneID:6404
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 05:05:23
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:16189
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29915
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49406How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 3486917Stop: 3488314
Length: 1398
Start Codon: GTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGCTTGAAGTCGGGCCAGAACAGGTCGGAGAAATACAGCTCGGCGTAGGCCAGCTGCCAGAGAAGGAAATT
GCTGATGCGATGCTCGCCGCCGGTGCGGATGCACAGGTCGGGCAGCGGCTGGTCGCCGGTCACCAGGCAACC
CTGGAGCAGCTCGGCGGAGATATCGTCCGCCGCCAGGTGCCCGCCCTGGACCTCGCGCGCCAGGCGCTGTGC
GGCCTGGACGATGTCCCACTGGCCGCCGTAGTTGGCGGCGACCTGGAGGAGGAAACGGGTATTGCTGGCAGT
GGCGGCTTCCGCTTCGCGCATGGCCGCCTGCAACTCCGGATGGAAACGCGTGCGATCGCCGATGATGCGCAG
GCGGATGCCGTTCTCGTCGAGCTTGCGCACCTCGCGGCGCAGGGCCACGAGAAACAGTTCCATCAGCGCGCT
GACTTCGTCCGCCGGACGCTGCCAGTTCTCGCTGGAGAACGCGAACAGGGTGAGGACCTCGACCCCTGCCTC
GGCGCAGACCTCGATCACCGCCCTGACGGCATCGACACCGGCCTTGTGGCCGGCGACGCCGGGCAGAAGACG
CTTCTTCGCCCAGCGATTGTTACCGTCCATGATAATGGCCACGTGGCGTGGCACGCACACATCCTTCCGGGT
CTTTTCCATGACGTCAGCCCGGCCTCAGACAGCCATGAGGTCCGCTTCTTTGGCTTCCAGTGCCTTCTCGAT
CTCACCGATGAACTTGTCGGTCAGCTTCTGCACGTCGTCGCCGGCGCGGCGCTCttCGTCCTCGCTGATTTC
CTTTTCCTTCTGCAGGTCCTTCAACTGGGCCAGCGCATCGCGACGGATGTTGCGCACGGAAACCCGCGCCTG
CTCGGCCTCGGCACGCGCCTGCTTGGTGTAGCCCTTGCGGGTCTCCTCGGTCAGGGCCGGCATCGGTACGCG
GATGGTGGTGCCGGCGGTGGCCGGGTTGAGCCCCAGGTCGGAGGTCATGATgGCCTTCTCGACCGCCTgGAT
CATGCTCTTGTCGAACACGGCCAGGGCCAGGGTGCGGGAGTCTTCCACGGTGACGTTGGCGACCTGGCGCAG
CGGCGTATCGGCACCGTAATAGGAAACCATCACGCTATCCAGGATGCTCGGATGCGCGCGACCGGTGCGAAT
CTTCGCGAAGGCATGGCCCAGCGCTTCCAGGGTCTTGCCCATGCGCTCCTGCGCTTCCTTCTTGATCTCGTT
GATCATTCTCAACCCTCCTCGATCAGGGTGCCTTCGGCACCACCAACAACAATATTCAGCAATGCGCCCGGC
TTGTTCATGTTGAACACCCGCAGCGGCATGTTCTGGTCACGGCACAGGCAGATGGCGGTCAGGTCCATCACG
CCGAGCTTGCGATCGAGCACTTCATCATAG