ViewGene

Locus Name:
GeneID:
Location:

GeneID:6403
TrivialName: PA14_17160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17160
PAO1 Ortholog Locus:
Sequence Length:2385
Protein Length:794
Start: 1472978
Stop: 1470594
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK22724.1| (AE005749) hypothetical protein [Caulobacter crescentus CB15]
Identities = 221/840 (26%), Positives = 296/840 (35%), Gaps = 177/840 (21%)
Sequence:
ATGGTTTCGTTACTCGGTACTACGTACAAATCAGAAGGTCTGGCCCAGGGAGAACTGGAAGACCTGGGTTTC
CGCGTTGTCCGGCTTCTTGATCGGCGTCGCCAGGCTGAAGCTCAGCGGGCCCAGCGCGGTGATCCAGGTCAG
GCCGACGCCCACGGAACTGGCGAGGTTGTCGGTCTTGATGCCGTCGCAGTTGGTGGTGGTATTGGTCGGGCA
GTCGGTATCGAAGGTGCTACCCACGTCCCAGAACAGCACGGTACGCAACTGGCGCTGGTCCTTGACGAACGG
CAGCGGGAACAGCAGCTCGGCGCCGCCGGTGATCAGGATGTTACCACCGAAGGCTTCGGGATCCTGGTCCGG
GTCGGTGTAGCGACCACGTTCATCAGGCCCAGGAATGATCTTCCCATCCTTGTAAGCCCTAGAGGGAGTACT
ACGAGGCCCCAGCGTGCTGTCCTTGAAGCCTCGCACCGAGTTGAAGCCGCCGGCGTAGTAGTTCTCGTAGAA
CGGCAGGCGCTCGGTGGATCCGTAGCCGTCGCCATAGCCCAGCTCGGTGTGGAAGCGCATGGTGTAGTTGTC
GGTCAGCGGGGCAAAGACCTGCCCGCGGTAGTCGATCTTGTAGAACGACAGGTCGCTGCCCGGCAGGGTGGT
TTCCAGGGTCAGGCTCTGCGAGTGACCACGGGTGGCCAGCACGCCCTTGTTCAGGGTCGATTCGGACCAGCC
GATGGAAGCCTTGAAGTTGGTGAAGTTGTCGCCTTCCTTGTCGAGGAAGTCGTAGATCTCGTCCACGGTGTA
GCGGCCGGTGTCGATCTGGTCGCGCTGCACGCTCAGCCCATAGGTCAGGCGCGAGGTCTCGCTGATCGGGTA
GCCGATGCTCATGCCGGCGCCCAGGCTGTTCACCGAGTAGCTGGCGACGTCGACGTCGAGTTCGTCGTAGTC
GGTCTTCCGGTAGAAGGCGTTGTAGCCGAGGCTGACGCCGTCGACGGTCCAGTAGGGGTCGACGAAGCCGAA
GTTGTAGCGGGTCTGGTATTCGCTGCGGGTCAGGCCGATGCTGACCTTGTTGCCGGTACCCAGGAAGTTGTT
CTGGCTGATCGAGCCACCGAGGATCAGGCCGGCGCTCTGGGCGAAGCCGACGCTGGCGGTGATCGAGCCGGA
CGGTTGCTCTTCGACGCTGTAGTTGACGTCGACCTGGTCGTCGGTGCCGGGAACCGCCGGGGTCTCGACGTT
GACTTCCTTGAAGTAGCCGAGGCGCTCCAGACGGGCCTTGGACTGGTCGATCAGGTAGGTGGAGGCCCAGCC
GCCCTCCATCTGGCGCATTTCGCGGCGCAGCACTTCGTCTTCGGTCTTGGTGTTGCCGCGGAAGTTGATGCG
GTTGACGTAGGCGCGCTTGCCCGGGTCGACGACGAAGGTCACCGAGACGGTCTTGTCGTCGTCATGGGCTTC
CGGCACGCCGTTGACGTTGGCGAAGGTGTAGCCCTCGTTGCCCAGGCGACGGGTGATCAGGTCGGAGGTGGT
GGTCATCACCTTGCGCGAGAACACCTGGCCCTTCTGTACCAGCAGCAGGCGCTTCACTTCCTCTTCCGGCAC
CTTCAGGTCGCCGGTCAGCTTCACGTCGCGGATGGTGTACTTCTCACCCTCGTTGATGTTGACGGTGATGTA
GACGTGCTTCTTGTCCGGGGTGATGGATACCTGGGTGGAGGCGATATCCATGTTGATGTAGCCGCGGTCCAG
GTAATAGGAGCGCAGGCGCTCAAGGTCGCCGGAGAGCTTTTCGCGGGCGTACTTGTCGTCGTTCTTGAAGAA
CGACAGCCAGTTGGTGGTCTTCAGTTCGAACAGGTCGGTCAGGTCTTCTTCGGAGAAGACGGTGTTGCCCAC
CACGTTGATGTGGGAAATCGCAGCGACCGTGCCTTCGTTGATGTTGATCTTCAGCGCGACGCGGTTGCGCGG
CTGCGGGATCACTTCCGCGTTGATCTCGGCCGAGTAGCGGCCCTGGGCCACGTACTGGCGTTGCAGCTCGTT
GCGCACGCCTTCGAGGGTGGCGCGCTGGAAGATCTCGCCCTCGGCCAGGCCGGACTGTTTCAGGCCCTTGAG
CAGGTCTTCCTTGGAAATCGCCTTGTTGCCCTCGATCTCGATGCTGGAGATCGACGGGCGCTCGACTACAGT
GACTACCAGCACGTTGCCATCGCGGCCGAGCTGGATGTCCTGGAAGAAACCGGTCTTGAACAGGGAGCGGGT
GGCCTGGACCAGGGCCTGGTCGTCGATGGTCTCGCCGACGTTCAGCGGCAGGGCGGCGAACACGCTACCGGC
GGACACGCGCTGCAGGCCATTGACCCGGATATCGGAAACAGTGAAGGACTCGGCGTGAACCTCGGCGATCAT
CAGCGCTGA
Translation:
MVSLLGTTYKSEGLAQGELEDLGFRVVRLLDRRRQAEAQRAQRGDPGQADAHGTGEVVGLDAVAVGGGIGRA
VGIEGATHVPEQHGTQLALVLDERQREQQLGAAGDQDVTTEGFGILVRVGVATTFIRPRNDLPILVSPRGST
TRPQRAVLEASHRVEAAGVVVLVERQALGGSVAVAIAQLGVEAHGVVVGQRGKDLPAVVDLVERQVAARQGG
FQGQALRVTTGGQHALVQGRFGPADGSLEVGEVVAFLVEEVVDLVHGVAAGVDLVALHAQPIGQARGLADRV
ADAHAGAQAVHRVAGDVDVEFVVVGLPVEGVVAEADAVDGPVGVDEAEVVAGLVFAAGQADADLVAGTQEVV
LADRATEDQAGALGEADAGGDRAGRLLFDAVVDVDLVVGAGNRRGLDVDFLEVAEALQTGLGLVDQVGGGPA
ALHLAHFAAQHFVFGLGVAAEVDAVDVGALARVDDEGHRDGLVVVMGFRHAVDVGEGVALVAQATGDQVGGG
GHHLAREHLALLYQQQALHFLFRHLQVAGQLHVADGVLLTLVDVDGDVDVLLVRGDGYLGGGDIHVDVAAVQ
VIGAQALKVAGELFAGVLVVVLEERQPVGGLQFEQVGQVFFGEDGVAHHVDVGNRSDRAFVDVDLQRDAVAR
LRDHFRVDLGRVAALGHVLALQLVAHAFEGGALEDLALGQAGLFQALEQVFLGNRLVALDLDAGDRRALDYS
DYQHVAIAAELDVLEETGLEQGAGGLDQGLVVDGLADVQRQGGEHATGGHALQAIDPDIGNSEGLGVNLGDH
QR*
AnnotationID:6404GeneID:6403
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 05:05:51
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:12622
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29913
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49405How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 3480959Stop: 3483343
Length: 2385
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGTTTCGTTACTCGGTACTACGTACAAATCAGAAGGTCTGGCCCAGGGAGAACTGGAAGACCTGGGTTTC
CGCGTTGTCCGGCTTCTTGATCGGCGTCGCCAGGCTGAAGCTCAGCGGGCCCAGCGCGGTGATCCAGGTCAG
GCCGACGCCCACGGAACTGGCGAGGTTGTCGGTCTTGATGCCGTCGCAGTTGGTGGTGGTATTGGTCGGGCA
GTCGGTATCGAAGGTGCTACCCACGTCCCAGAACAGCACGGTACGCAACTGGCGCTGGTCCTTGACGAACGG
CAGCGGGAACAGCAGCTCGGCGCCGCCGGTGATCAGGATGTTACCACCGAAGGCTTCGGGATCCTGGTCCGG
GTCGGTGTAGCGACCACGTTCATCAGGCCCAGGAATGATCTTCCCATCCTTGTAAGCCCTAGAGGGAGTACT
ACGAGGCCCCAGCGTGCTGTCCTTGAAGCCTCGCACCGAGTTGAAGCCGCCGGCGTAGTAGTTCTCGTAGAA
CGGCAGGCGCTCGGTGGATCCGTAGCCGTCGCCATAGCCCAGCTCGGTGTGGAAGCGCATGGTGTAGTTGTC
GGTCAGCGGGGCAAAGACCTGCCCGCGGTAGTCGATCTTGTAGAACGACAGGTCGCTGCCCGGCAGGGTGGT
TTCCAGGGTCAGGCTCTGCGAGTGACCACGGGTGGCCAGCACGCCCTTGTTCAGGGTCGATTCGGACCAGCC
GATGGAAGCCTTGAAGTTGGTGAAGTTGTCGCCTTCCTTGTCGAGGAAGTCGTAGATCTCGTCCACGGTGTA
GCGGCCGGTGTCGATCTGGTCGCGCTGCACGCTCAGCCCATAGGTCAGGCGCGAGGTCTCGCTGATCGGGTA
GCCGATGCTCATGCCGGCGCCCAGGCTGTTCACCGAGTAGCTGGCGACGTCGACGTCGAGTTCGTCGTAGTC
GGTCTTCCGGTAGAAGGCGTTGTAGCCGAGGCTGACGCCGTCGACGGTCCAGTAGGGGTCGACGAAGCCGAA
GTTGTAGCGGGTCTGGTATTCGCTGCGGGTCAGGCCGATGCTGACCTTGTTGCCGGTACCCAGGAAGTTGTT
CTGGCTGATCGAGCCACCGAGGATCAGGCCGGCGCTCTGGGCGAAGCCGACGCTGGCGGTGATCGAGCCGGA
CGGTTGCTCTTCGACGCTGTAGTTGACGTCGACCTGGTCGTCGGTGCCGGGAACCGCCGGGGTCTCGACGTT
GACTTCCTTGAAGTAGCCGAGGCGCTCCAGACGGGCCTTGGACTGGTCGATCAGGTAGGTGGAGGCCCAGCC
GCCCTCCATCTGGCGCATTTCGCGGCGCAGCACTTCGTCTTCGGTCTTGGTGTTGCCGCGGAAGTTGATGCG
GTTGACGTAGGCGCGCTTGCCCGGGTCGACGACGAAGGTCACCGAGACGGTCTTGTCGTCGTCATGGGCTTC
CGGCACGCCGTTGACGTTGGCGAAGGTGTAGCCCTCGTTGCCCAGGCGACGGGTGATCAGGTCGGAGGTGGT
GGTCATCACCTTGCGCGAGAACACCTGGCCCTTCTGTACCAGCAGCAGGCGCTTCACTTCCTCTTCCGGCAC
CTTCAGGTCGCCGGTCAGCTTCACGTCGCGGATGGTGTACTTCTCACCCTCGTTGATGTTGACGGTGATGTA
GACGTGCTTCTTGTCCGGGGTGATGGATACCTGGGTGGAGGCGATATCCATGTTGATGTAGCCGCGGTCCAG
GTAATAGGAGCGCAGGCGCTCAAGGTCGCCGGAGAGCTTTTCGCGGGCGTACTTGTCGTCGTTCTTGAAGAA
CGACAGCCAGTTGGTGGTCTTCAGTTCGAACAGGTCGGTCAGGTCTTCTTCGGAGAAGACGGTGTTGCCCAC
CACGTTGATGTGGGAAATCGCAGCGACCGTGCCTTCGTTGATGTTGATCTTCAGCGCGACGCGGTTGCGCGG
CTGCGGGATCACTTCCGCGTTGATCTCGGCCGAGTAGCGGCCCTGGGCCACGTACTGGCGTTGCAGCTCGTT
GCGCACGCCTTCGAGGGTGGCGCGCTGGAAGATCTCGCCCTCGGCCAGGCCGGACTGTTTCAGGCCCTTGAG
CAGGTCTTCCTTGGAAATCGCCTTGTTGCCCTCGATCTCGATGCTGGAGATCGACGGGCGCTCGACTACAGT
GACTACCAGCACGTTGCCATCGCGGCCGAGCTGGATGTCCTGGAAGAAACCGGTCTTGAACAGGGAGCGGGT
GGCCTGGACCAGGGCCTGGTCGTCGATGGTCTCGCCGACGTTCAGCGGCAGGGCGGCGAACACGCTACCGGC
GGACACGCGCTGCAGGCCATTGACCCGGATATCGGAAACAGTGAAGGACTCGGCGTGAACCTCGGCGATCAT
CAGCGCTGA