ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6396

TrivialName: PA14_17560

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_17560

PAO1 Ortholog Locus:

Sequence Length: 1542

Protein Length: 513

Start: 1509398

Stop: 1507857

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens] Identities = 137/453 (30%), Positives = 149/453 (32%), Gaps = 111/453 (24%)

Sequence:

ATGCGGCATGCGCCAGGGGCGCCGCGAAGCCGACAACGGCAACCGCGCGCCCTTCCCCTTCGATCCCGCGAG
CATCGACGCGGTGGTCATCTCCCACGCCCACCTGGACCACAGCGGTCTGCTGCCGCGCCTGGCGGCCGAGGG
CTTCAAGGGCCCGATCTTCGCCACCGAGGCCACCTGCGAACTGCTCGAACTCATGCTGCTGGACTCCGCACA
CATCCAGGAAAAGGACGCCGAGTGGGAGAACCGCTGGCGCAACCGGATCGGCAAGCCGAGCATCAAGCCGCT
GTATACCCAGGCCGACACCGAACGCGCGCTCAAGCTGCGCCGGCCGATCAGCCTCGGCAGCACGGTGGCGGT
CGCTCGTGGCGTGCGGGTGACCTTTCACAACGCCGGCCACATCCTCGGCTCGTCGATCGTCGAAGTGCAGTT
CCACGACCAGGTGCAACCGCGCCGCCTGGTGTTTTCCGGCGACCTCGGCAACACCTGCTCGCCGTTGATGCG
CGCGCCCTCGCCGCTGAGCCGGGCCGACGTGGTGATGCTCGAGTCCACCTACGGCGATCGCGATCACCGCGA
CAGCAACGAAACCCTGGAGGAACTGGCGGCGATCCTCGAACAGGCGCATCGCGACGGCGGCAACGTGCTGAT
CCCGTCGTTCGCCGTCGGCCGCACCCAGGACCTGCTCTACTACCTCGGCCGCTTCTACCAGGAGGGCCGCCT
GCCGCAACAGGCGGTGTTCCTCGACAGCCCGATGGCCGCCCGCGCCAACGGCATCTACCTGCGCCACAGCAA
CGAGTTCGACGACCGCGACCGCGAGTACATTCGCGGCACCGGCACCACCCGCCTGGAGGAATGGCTGCCGGT
CCTTCGCGTCACCCGCAGCGCCGACGAGTCGATGGCGATCAACCGGATCAAGAGCGGCGCGGTCATCATCGC
CGGCAGCGGCATGTGCACCGGTGGCCGTATCGTCCATCACTTCAAGCACAACCTCTGGCGCCCGGAATGCCA
TGTGGTATTCCCCGGCTTCCAGGCGCGCGGCACCCTGGGCCGCAACATCGTCGACGGCGCCAGCGCGGTTCG
CGTGTTCCACCAGCGCATCGCGGTCAAGGCGCAAATCCATACCCTCGGCGGCTTCTCCGCCCACGCCGGGCA
ATCGCAGTTGCTCGACTGGGTCGCTCACTTCGCCCACCGTCCCGCGCTATACCTGATACATGGCGAGCGGGA
AAAGATGGAAGCGTTGCGGGGCGCGATCCGCGAGCGCCTCGACTGGGATGCCGAGATACCCGAGCCCGGCGA
ACGCATCGAGATCTGAGCCGCCGTCCGCAACTGTCACGCAGTCCGTGGCAGTATGCGGATGACCGCCTGTCC
AGGGTGGTTGTAGAAGGAGTATGCGAATGCCCTACGAAGCCGATGACTATCTTTCCCGGCACTTCCAGACCA
GCGGCACCGACCTGGCGCGGAAGGTCGACGAACTGGCGGCCCTTGCGGCTCCCGGCGACAGCCCCAATCTCG
CGCTCTACCGCGAGATGCTCTTCACCGTGA

Translation:

MRHAPGAPRSRQRQPRALPLRSREHRRGGHLPRPPGPQRSAAAPGGRGLQGPDLRHRGHLRTARTHAAGLRT
HPGKGRRVGEPLAQPDRQAEHQAAVYPGRHRTRAQAAPADQPRQHGGGRSWRAGDLSQRRPHPRLVDRRSAV
PRPGATAPPGVFRRPRQHLLAVDARALAAEPGRRGDARVHLRRSRSPRQQRNPGGTGGDPRTGASRRRQRAD
PVVRRRPHPGPALLPRPLLPGGPPAATGGVPRQPDGRPRQRHLPAPQQRVRRPRPRVHSRHRHHPPGGMAAG
PSRHPQRRRVDGDQPDQERRGHHRRQRHVHRWPYRPSLQAQPLAPGMPCGIPRLPGARHPGPQHRRRRQRGS
RVPPAHRGQGANPYPRRLLRPRRAIAVARLGRSLRPPSRAIPDTWRAGKDGSVAGRDPRAPRLGCRDTRARR
THRDLSRRPQLSRSPWQYADDRLSRVVVEGVCECPTKPMTIFPGTSRPAAPTWRGRSTNWRPLRLPATAPIS
RSTARCSSP*

AnnotationID:6397 GeneID:6396

AnnotatorUID: diggins

Modification Date/Time: 2004-04-28 18:06:32

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:12609

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29899

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:31927

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6396_cdd.html

URL:

GC ORFID: `49398`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `3444539`	Stop: `3446080`
Length: `1542`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCGGCATGCGCCAGGGGCGCCGCGAAGCCGACAACGGCAACCGCGCGCCCTTCCCCTTCGATCCCGCGAG CATCGACGCGGTGGTCATCTCCCACGCCCACCTGGACCACAGCGGTCTGCTGCCGCGCCTGGCGGCCGAGGG CTTCAAGGGCCCGATCTTCGCCACCGAGGCCACCTGCGAACTGCTCGAACTCATGCTGCTGGACTCCGCACA CATCCAGGAAAAGGACGCCGAGTGGGAGAACCGCTGGCGCAACCGGATCGGCAAGCCGAGCATCAAGCCGCT GTATACCCAGGCCGACACCGAACGCGCGCTCAAGCTGCGCCGGCCGATCAGCCTCGGCAGCACGGTGGCGGT CGCTCGTGGCGTGCGGGTGACCTTTCACAACGCCGGCCACATCCTCGGCTCGTCGATCGTCGAAGTGCAGTT CCACGACCAGGTGCAACCGCGCCGCCTGGTGTTTTCCGGCGACCTCGGCAACACCTGCTCGCCGTTGATGCG CGCGCCCTCGCCGCTGAGCCGGGCCGACGTGGTGATGCTCGAGTCCACCTACGGCGATCGCGATCACCGCGA CAGCAACGAAACCCTGGAGGAACTGGCGGCGATCCTCGAACAGGCGCATCGCGACGGCGGCAACGTGCTGAT CCCGTCGTTCGCCGTCGGCCGCACCCAGGACCTGCTCTACTACCTCGGCCGCTTCTACCAGGAGGGCCGCCT GCCGCAACAGGCGGTGTTCCTCGACAGCCCGATGGCCGCCCGCGCCAACGGCATCTACCTGCGCCACAGCAA CGAGTTCGACGACCGCGACCGCGAGTACATTCGCGGCACCGGCACCACCCGCCTGGAGGAATGGCTGCCGGT CCTTCGCGTCACCCGCAGCGCCGACGAGTCGATGGCGATCAACCGGATCAAGAGCGGCGCGGTCATCATCGC CGGCAGCGGCATGTGCACCGGTGGCCGTATCGTCCATCACTTCAAGCACAACCTCTGGCGCCCGGAATGCCA TGTGGTATTCCCCGGCTTCCAGGCGCGCGGCACCCTGGGCCGCAACATCGTCGACGGCGCCAGCGCGGTTCG CGTGTTCCACCAGCGCATCGCGGTCAAGGCGCAAATCCATACCCTCGGCGGCTTCTCCGCCCACGCCGGGCA ATCGCAGTTGCTCGACTGGGTCGCTCACTTCGCCCACCGTCCCGCGCTATACCTGATACATGGCGAGCGGGA AAAGATGGAAGCGTTGCGGGGCGCGATCCGCGAGCGCCTCGACTGGGATGCCGAGATACCCGAGCCCGGCGA ACGCATCGAGATCTGAGCCGCCGTCCGCAACTGTCACGCAGTCCGTGGCAGTATGCGGATGACCGCCTGTCC AGGGTGGTTGTAGAAGGAGTATGCGAATGCCCTACGAAGCCGATGACTATCTTTCCCGGCACTTCCAGACCA GCGGCACCGACCTGGCGCGGAAGGTCGACGAACTGGCGGCCCTTGCGGCTCCCGGCGACAGCCCCAATCTCG CGCTCTACCGCGAGATGCTCTTCACCGTGA