ViewGene
Locus Name:
GeneID:
Location:

GeneID:6395
TrivialName: PA14_17680
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17680
PAO1 Ortholog Locus:
Sequence Length:177
Protein Length:58
Start: 1519888
Stop: 1520064
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
GID6395 (PA14_17680) replaced by GID7428 (PA14_17675). Homology: gb|AAG06991.1|AE004780_10 (AE004780) diacylglycerol kinase [Pseudomonas aeruginosa PAO1]
Identities = 57/58 (98%), Positives = 58/58 (100%)
Sequence:
gTGTGCCTGCTGGCGCTGATCGTCGAGCTGCTCAACTCGGCGATCGAGGCCACCGTCGACCGCGTCTCGCTG
GAACGCCACCCTCTGTCGAAGAATGCCAAGGACATGGGCAGCGCCGCGCAGTTCGTGGCCCTCACCGTGATC
ACCGTGACCTGGGCGACCATCCTGCTGGGCTGA
Translation:
MCLLALIVELLNSAIEATVDRVSLERHPLSKNAKDMGSAAQFVALTVITVTWATILLG*
AnnotationID:6396GeneID:6395
AnnotatorUID: danlee
Modification Date/Time: 2006-03-20 14:02:00
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
>gb|AAO57483.1| (AE016870) diacylglycerol kinase [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 121

 Score = 92.4 bits (228), Expect = 5e-19
 Identities = 43/58 (74%), Positives = 53/58 (91%)

>emb|CAC86791.1| (AJ344068) putative diacylglycerol kinase [Pseudomonas putida]
          Length = 131

 Score = 82.0 bits (201), Expect = 7e-16
 Identities = 41/55 (74%), Positives = 47/55 (85%)

>gb|AAN83439.1|AE016770_239 (AE016770) Diacylglycerol kinase [Escherichia coli CFT073]
          Length = 122

 Score = 65.1 bits (157), Expect = 9e-11
 Identities = 31/54 (57%), Positives = 39/54 (72%)








 
Structural Features:






   
Genomic Context:






   
Comment:
GID6395 (PA14_17680) replaced by GID7428 (PA14_17675).


















    ReferenceID:16179




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29897




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31938




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6395_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6395
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7982
                           PA3603_tr
                           translation of PA3603
                           123
                           47.15
                           47.15
                           65
                           279.0
     

     
     
199171
                           gb|AAG06991.1|AE004780_10
                           (AE004780) diacylglycerol kinase [Pseudomonas aeruginosa PAO1]
                           123
                           47.15
                           47.15
                           65
                           279.0
     

     






      

          
GC ORFID: 49397How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3434048Stop: 3433872

          
Length: 177


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3603 translation of PA3603Homolog Bit Score 112.0

          
Other Homologs:  t_PA3603 translation of PA3603 (BLASTP 112)

          
GC ORF Sequence

           
gTGTGCCTGCTGGCGCTGATCGTCGAGCTGCTCAACTCGGCGATCGAGGCCACCGTCGACCGCGTCTCGCTG 
GAACGCCACCCTCTGTCGAAGAATGCCAAGGACATGGGCAGCGCCGCGCAGTTCGTGGCCCTCACCGTGATC 
ACCGTGACCTGGGCGACCATCCTGCTGGGCTGA