ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6394

TrivialName: PA14_17750

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_17750

PAO1 Ortholog Locus:

Sequence Length: 2664

Protein Length: 887

Start: 1528401

Stop: 1525738

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: emb|CAA55649.1| (X79027) unknown [Microbacterium ammoniaphilum] Identities = 131/407 (32%), Positives = 153/407 (37%), Gaps = 77/407 (18%)

Sequence:

TTGCGGGGGTGCCACCTAGACTCCGAGGCACCCGGGTCAACACCGACGCACGCTCTCCCTCCACGGAAACCA
GCGTTTCCGCCCCGCCTTTCAGCGAAGGGCGGTAGGGAGCGGCGTGTCGGCGAGAACAACAATAAACAGGAC
TCGACCCATGCCGCGCACGCCCTCTCCCGAAGACGCCGACCTGCACAAGAAAGCCCGCAGGGCCGGTATCGC
CTCCTTCATCGGCACCACCATCGAGTGGTACGACTTCTACATCTACGGCCTGGCCGCCGCCCTGGTGTTCGG
CAAGGTATTCTTCCCCGCCGACATGGATCCGGGCCTGGCCACCCTGCTGTCCTTCGTCACCCTCTGGTCGGG
CTTCATCGCTCGTCCGCTGGGCGGGATCATCTTCGGCCATCTCGGCGACCGCATCGGCCGCAAGACCACCCT
GGTGATCACCCTGATCATGATGGGCATCGCCACGACCTGCATCGGCCTGTTGCCGGTCTATACGCAGATCGG
CATCTGGGCACCGATCTCCCTGGTGGCGCTGCGTATCGTCCAGGGCATCGCGGTCGGCGGCGAGTGGGGCGG
CGCGATCCTGATCGCCAGCGAAAGCGCGCCCAAGGGCAAGGGCATCCTGTACGCCGCCTTCGCCCAGCAGGG
CTCGCCCACCGGCAACCTGCTGGCGACCCTGGCGTTCTTCGCCCTCAGCGCCCTGCCCGCCTCGGACTTCAT
TCTCTGGGGCTGGCGCGCGCCGTTCCTGCTCTCCGCAGTGCTGGTCATCGTCGGCATGGTGATCCGCCTGAA
GCTGGAGGAGTCGGAAGACATGAAGCGCGTGCTGGCGCAGAAGCGCACGGTGAAGCTGCCGCTCGCCGAGGT
GCTGGGCAAGCATTGGAAGATCGTCCTGCTCGGCGCCGGCGTGCTGCCGATCATCCACGTCACCTACTTCAA
GGGCACCTTCGCCCTCTCCTGGGCGACCAAGACCCTCGGCTACAGCCAGGGCACCTTCCTCAGCATCATCGT
GGTCGCGCTGGTGGTGCAGTTCCTCAGCCAGCCACTGGGGGCGCTGCTCACTTCGCGCATCGACATGCGCAA
GGCGGCATGCCTGATGGTGCTGCCGGAGTTCATCCTGATGCCGGCGATGTTCTTCGCCGTGGAAACCAAGGT
CTACTGGATCGCCGCGGCCGGCATGTGCCTGGCCACGGTGCCGCACGCGATGTTCTACGGCGCGGTGGGCGG
TATCCTCGCCCGAGCCTTCCCGGCGCGGGTGCGCTACACCGGCCTGTCGCTGGCCTACCAGCTCTGCTCGCT
GCTGGTCGGCGGCGGTACGCCGGTACTGGCCCAGTGGATTCTCAACAGTACCGGCAGCATCGTCGGCGTGGC
CCTGGCCTCGGCCTGCTACGCGCTGGTCTCGCTGGCCTGTACCCTGGCCCTGTTGCGGATCACCGGGTTCCA
CGCCAGCGACCTGTCGACCGCCGAGCGCGCCGACGCCGAGGACTTGCAGCGGCCCGCAGCGGTCGAGCGGGA
ACCGGTGTTGCGCGCCCCCGCCCGGCTTCTGGGCGGCGATCCCGGCTAGCCGGCAGCGCCCATGCGCCGCTC
GTGCTCCAGCAACCAGCGCTTGCGCCACAGGCCACCGCCATAGCCGGTCAGGGAACCGTCCGAACCGATGAC
GCGGTGGCAGGGAATCACGATGGCGATCTGGTTGGCTCCGTTGGCGCGGGCCACGGCGCGCACCGACGACGG
CGAGCCGATGGACCTGGCCAGCCCGGCGTAGCTCTGCGTGCTGCCGCACGGTACCTCGCGCAGCGCCTGCCA
GACCGTGCGGGTGAAGGCCGAGGCGTTCAGCGCCAAGGGGGTCTGGAAGCGCACTGGAGTACCGCCGAAGTA
GTCGGCGAGTTCCGCCTCGATCCTGTCGATGGAGGCGAAACGGCCGAAACCGATGCTCGATCCGCTGCTCTT
CTGCAGGCGTTTCAGCTCCCCGCTCAACGCCGGGCGGTCGAAGAATTCCAGCAGGTGCAGGGCCTGCGCATC
GGCCACCGCGAGCATGGCGCCGAGCGGGGTCTGCAGCCAGTCCGCCTTGAGCAGCTCGCGCCCGCGCAACTG
CGACGGCGGCTCGCCCAGCAGGCGCGCGAAGGCGCTACGGAAGCCGCTGTCAGAGTCGAAGCTGGCATCCAG
TTGCGCGTCGATCACCCGCGCGCCCGAGGACAGCCGCTCGGCGACCTGGCCAAGACGGCGCAGGCGAGCCAT
TTCCAGAAAGGTCACGCCGAACTCGCGCTTGAAAGCACGGCGCACGGTGGACGGGTCATAGCCCAGCGCCGC
CAGGTCGTCTTCGAACCAGCGCCGCTGCGGTTGCCGACCGAGGCGCTGGAGCAGGTCGCTGACCAGCGGCCC
CTGCGTGCCGAGCCGCTCCAGCGGCCGGCAACGCAGGCAGGGTCGGAAGCCGGCCTCGACGCAGCCCTTGAT
CGAATCGAAGAACAGGGTGTTCTCGCGCTTCGGCTTGCGCGCCGGGCAGGTCAGGCGGCAGAACACCCCGGT
GCTCTTCACCCCGACGAAGGCGAAGCCATCGTAGGCGGGGTCGCGCGCCAACAGCGCGGCATACAGGGTGTC
GTCATCGGGAAGGGGAAGGAACAACGCTGCGTCGGACATGGCCGGCTCCGGAACCAGGGAGGCGATGGATAG

Translation:

MRGCHLDSEAPGSTPTHALPPRKPAFPPRLSAKGGRERRVGENNNKQDSTHAAHALSRRRRPAQESPQGRYR
LLHRHHHRVVRLLHLRPGRRPGVRQGILPRRHGSGPGHPAVLRHPLVGLHRSSAGRDHLRPSRRPHRPQDHP
GDHPDHDGHRHDLHRPVAGLYADRHLGTDLPGGAAYRPGHRGRRRVGRRDPDRQRKRAQGQGHPVRRLRPAG
LAHRQPAGDPGVLRPQRPARLGLHSLGLARAVPALRSAGHRRHGDPPEAGGVGRHEARAGAEAHGEAAARRG
AGQALEDRPARRRRAADHPRHLLQGHLRPLLGDQDPRLQPGHLPQHHRGRAGGAVPQPATGGAAHFAHRHAQ
GGMPDGAAGVHPDAGDVLRRGNQGLLDRRGRHVPGHGAARDVLRRGGRYPRPSLPGAGALHRPVAGLPALLA
AGRRRYAGTGPVDSQQYRQHRRRGPGLGLLRAGLAGLYPGPVADHRVPRQRPVDRRARRRRGLAAARSGRAG
TGVARPRPASGRRSRLAGSAHAPLVLQQPALAPQATAIAGQGTVRTDDAVAGNHDGDLVGSVGAGHGAHRRR
RADGPGQPGVALRAAARYLAQRLPDRAGEGRGVQRQGGLEAHWSTAEVVGEFRLDPVDGGETAETDARSAAL
LQAFQLPAQRRAVEEFQQVQGLRIGHREHGAERGLQPVRLEQLAPAQLRRRLAQQAREGATEAAVRVEAGIQ
LRVDHPRARGQPLGDLAKTAQASHFQKGHAELALESTAHGGRVIAQRRQVVFEPAPLRLPTEALEQVADQRP
LRAEPLQRPATQAGSEAGLDAALDRIEEQGVLALRLARRAGQAAEHPGALHPDEGEAIVGGVARQQRGIQGV
VIGKGKEQRCVGHGRLRNQGGDG*

AnnotationID:6395 GeneID:6394

AnnotatorUID: diggins

Modification Date/Time: 2005-04-20 11:11:53

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:16177

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29895

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:31946

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6394_cdd.html

URL:

GC ORFID: `49396`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `3425535`	Stop: `3428198`
Length: `2664`
Start Codon: `TTG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGCGGGGGTGCCACCTAGACTCCGAGGCACCCGGGTCAACACCGACGCACGCTCTCCCTCCACGGAAACCA GCGTTTCCGCCCCGCCTTTCAGCGAAGGGCGGTAGGGAGCGGCGTGTCGGCGAGAACAACAATAAACAGGAC TCGACCCATGCCGCGCACGCCCTCTCCCGAAGACGCCGACCTGCACAAGAAAGCCCGCAGGGCCGGTATCGC CTCCTTCATCGGCACCACCATCGAGTGGTACGACTTCTACATCTACGGCCTGGCCGCCGCCCTGGTGTTCGG CAAGGTATTCTTCCCCGCCGACATGGATCCGGGCCTGGCCACCCTGCTGTCCTTCGTCACCCTCTGGTCGGG CTTCATCGCTCGTCCGCTGGGCGGGATCATCTTCGGCCATCTCGGCGACCGCATCGGCCGCAAGACCACCCT GGTGATCACCCTGATCATGATGGGCATCGCCACGACCTGCATCGGCCTGTTGCCGGTCTATACGCAGATCGG CATCTGGGCACCGATCTCCCTGGTGGCGCTGCGTATCGTCCAGGGCATCGCGGTCGGCGGCGAGTGGGGCGG CGCGATCCTGATCGCCAGCGAAAGCGCGCCCAAGGGCAAGGGCATCCTGTACGCCGCCTTCGCCCAGCAGGG CTCGCCCACCGGCAACCTGCTGGCGACCCTGGCGTTCTTCGCCCTCAGCGCCCTGCCCGCCTCGGACTTCAT TCTCTGGGGCTGGCGCGCGCCGTTCCTGCTCTCCGCAGTGCTGGTCATCGTCGGCATGGTGATCCGCCTGAA GCTGGAGGAGTCGGAAGACATGAAGCGCGTGCTGGCGCAGAAGCGCACGGTGAAGCTGCCGCTCGCCGAGGT GCTGGGCAAGCATTGGAAGATCGTCCTGCTCGGCGCCGGCGTGCTGCCGATCATCCACGTCACCTACTTCAA GGGCACCTTCGCCCTCTCCTGGGCGACCAAGACCCTCGGCTACAGCCAGGGCACCTTCCTCAGCATCATCGT GGTCGCGCTGGTGGTGCAGTTCCTCAGCCAGCCACTGGGGGCGCTGCTCACTTCGCGCATCGACATGCGCAA GGCGGCATGCCTGATGGTGCTGCCGGAGTTCATCCTGATGCCGGCGATGTTCTTCGCCGTGGAAACCAAGGT CTACTGGATCGCCGCGGCCGGCATGTGCCTGGCCACGGTGCCGCACGCGATGTTCTACGGCGCGGTGGGCGG TATCCTCGCCCGAGCCTTCCCGGCGCGGGTGCGCTACACCGGCCTGTCGCTGGCCTACCAGCTCTGCTCGCT GCTGGTCGGCGGCGGTACGCCGGTACTGGCCCAGTGGATTCTCAACAGTACCGGCAGCATCGTCGGCGTGGC CCTGGCCTCGGCCTGCTACGCGCTGGTCTCGCTGGCCTGTACCCTGGCCCTGTTGCGGATCACCGGGTTCCA CGCCAGCGACCTGTCGACCGCCGAGCGCGCCGACGCCGAGGACTTGCAGCGGCCCGCAGCGGTCGAGCGGGA ACCGGTGTTGCGCGCCCCCGCCCGGCTTCTGGGCGGCGATCCCGGCTAGCCGGCAGCGCCCATGCGCCGCTC GTGCTCCAGCAACCAGCGCTTGCGCCACAGGCCACCGCCATAGCCGGTCAGGGAACCGTCCGAACCGATGAC GCGGTGGCAGGGAATCACGATGGCGATCTGGTTGGCTCCGTTGGCGCGGGCCACGGCGCGCACCGACGACGG CGAGCCGATGGACCTGGCCAGCCCGGCGTAGCTCTGCGTGCTGCCGCACGGTACCTCGCGCAGCGCCTGCCA GACCGTGCGGGTGAAGGCCGAGGCGTTCAGCGCCAAGGGGGTCTGGAAGCGCACTGGAGTACCGCCGAAGTA GTCGGCGAGTTCCGCCTCGATCCTGTCGATGGAGGCGAAACGGCCGAAACCGATGCTCGATCCGCTGCTCTT CTGCAGGCGTTTCAGCTCCCCGCTCAACGCCGGGCGGTCGAAGAATTCCAGCAGGTGCAGGGCCTGCGCATC GGCCACCGCGAGCATGGCGCCGAGCGGGGTCTGCAGCCAGTCCGCCTTGAGCAGCTCGCGCCCGCGCAACTG CGACGGCGGCTCGCCCAGCAGGCGCGCGAAGGCGCTACGGAAGCCGCTGTCAGAGTCGAAGCTGGCATCCAG TTGCGCGTCGATCACCCGCGCGCCCGAGGACAGCCGCTCGGCGACCTGGCCAAGACGGCGCAGGCGAGCCAT TTCCAGAAAGGTCACGCCGAACTCGCGCTTGAAAGCACGGCGCACGGTGGACGGGTCATAGCCCAGCGCCGC CAGGTCGTCTTCGAACCAGCGCCGCTGCGGTTGCCGACCGAGGCGCTGGAGCAGGTCGCTGACCAGCGGCCC CTGCGTGCCGAGCCGCTCCAGCGGCCGGCAACGCAGGCAGGGTCGGAAGCCGGCCTCGACGCAGCCCTTGAT CGAATCGAAGAACAGGGTGTTCTCGCGCTTCGGCTTGCGCGCCGGGCAGGTCAGGCGGCAGAACACCCCGGT GCTCTTCACCCCGACGAAGGCGAAGCCATCGTAGGCGGGGTCGCGCGCCAACAGCGCGGCATACAGGGTGTC GTCATCGGGAAGGGGAAGGAACAACGCTGCGTCGGACATGGCCGGCTCCGGAACCAGGGAGGCGATGGATAG