ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6391

TrivialName: PA14_17830

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_17830

PAO1 Ortholog Locus:

Sequence Length: 1323

Protein Length: 440

Start: 1533408

Stop: 1532086

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK75846.1| (AE007470) cell wall surface anchor family protein [Streptococcus pneumoniae TIGR4] Identities = 69/267 (25%), Positives = 119/267 (44%), Gaps = 4/267 (1%)

Sequence:

TTGCAGCGCCGCCCCCTGGCGGCTGTCGTAGAGCAGCACCGACAGCCCGGCACAGGCAGCGAGCTGGGCGAT
GCCCTGGCCCATGGCACCGGTACCGACGATACCGATGAGAACGATCGATGGCTCGCTCATTTTCCCAGGTAC
TCCGCTGTGCGTTTTTCCAGGAAGGCACGCATGCCCTCCTTCTGGTCGTGGCTGTCGAACAGCAACTGGAAG
GCCTTGCGCTCCAGCGCCAGGGCCTGGTCCAGCGGCAGGTCGGCGCCGGCCAGGACCACTTCCTTGATCTGC
GCCAGCGCCAGCGGCGGCAGGCCGGCGATCTGGCGAGCCAGTTCGAGGGCGCGATCCAATGCCTGGCCATCC
GCCGCCACCTCGCTGACCAACCCTATGGCCAGGGCCTCCGGCGCCCGTACCGTGCAACCGGTAAACAGCATG
CGCAGCGCCTGGAACTTGCCCACCGCTCGCACCAGGCGCTGGGTGCCGCCGGCGCCGGGCATCACGCCGACA
CGGATTTCCGGCTGGGCGAAGCGCGCCGAGGCACCGGCGACGATCAGGTCGCAGTGCATCGCCAACTCGCAG
CCTCCGCCCAGGGCATGGCCCTCCACGGCGGCGATCAGCGGCTTGCGGCAGGCGGCGAGCGCCTGCCAGTGG
CGCTCCACCCCGCGCTGCTGGATCTCCAGCGCGGACGCCTCCGCCAGTTCGTTGAGATCGGCGCCGGCGGCG
AACGCCGTGCCATTTCCGGTGAGGACGATGACCCGGGTATCGGCGCACTCGTCGAGGCGCCGTACGTACTCC
GCCAGAGCCTCGCGCAGGCGCATGTTCAGGGCGTTGAGTACTGCCGGGCGGTTCAGTCGCAACAGGGCCACG
CCCTGCTCCGGCCGGTCCAGCAGCACGAGTTCGGGGCTCACCGCCCCAGGGGAGGAATCCATGGCCATCTCC
AATTGCCCGGGGATTGAGTTGCACGGCGCAGGCCGTGCCATGCGGGGTTTCAGGCGCGGACGATGCCGCGCC
GGACCAGCGCGTCGATCGCCTCGGCGCTCAATCCCAGTTCCGCCAGGACTTCCCGGGTGTCTCCGCCCAGTA
CCGGCGGCGTGGCGCGGTAGCTGGCCGGGGTGCGCGAAAGCTTCACCGGCGAGGCGATGCCGCGATAGCCCT
CGAGTTCGACGACCATCCCGCGATGGCGGGTGTGCGGGTGTTCCACCACCCGATCCACCGTGGCGATCACTC
CGCAGGGCACGCCGAGACGGATCAGCAGCTCGGCCAGCTCGCGACCGTCGTGGGCCGCCAGGTAGTCCTCCA
GGGCGCGCTTCAGCGCCTCGCGGTTGA

Translation:

MQRRPLAAVVEQHRQPGTGSELGDALAHGTGTDDTDENDRWLAHFPRYSAVRFSRKARMPSFWSWLSNSNWK
ALRSSARAWSSGRSAPARTTSLICASASGGRPAIWRASSRARSNAWPSAATSLTNPMARASGARTVQPVNSM
RSAWNLPTARTRRWVPPAPGITPTRISGWAKRAEAPATIRSQCIANSQPPPRAWPSTAAISGLRQAASACQW
RSTPRCWISSADASASSLRSAPAANAVPFPVRTMTRVSAHSSRRRTYSARASRRRMFRALSTAGRFSRNRAT
PCSGRSSSTSSGLTAPGEESMAISNCPGIELHGAGRAMRGFRRGRCRAGPARRSPRRSIPVPPGLPGCLRPV
PAAWRGSWPGCAKASPARRCRDSPRVRRPSRDGGCAGVPPPDPPWRSLRRARRDGSAARPARDRRGPPGSPP
GRASAPRG*

AnnotationID:6392 GeneID:6391

AnnotatorUID: diggins

Modification Date/Time: 2004-04-29 12:12:55

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16172

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29889

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:31951

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6391_cdd.html

URL:

GC ORFID: `49393`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `3420528`	Stop: `3421850`
Length: `1323`
Start Codon: `TTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGCAGCGCCGCCCCCTGGCGGCTGTCGTAGAGCAGCACCGACAGCCCGGCACAGGCAGCGAGCTGGGCGAT GCCCTGGCCCATGGCACCGGTACCGACGATACCGATGAGAACGATCGATGGCTCGCTCATTTTCCCAGGTAC TCCGCTGTGCGTTTTTCCAGGAAGGCACGCATGCCCTCCTTCTGGTCGTGGCTGTCGAACAGCAACTGGAAG GCCTTGCGCTCCAGCGCCAGGGCCTGGTCCAGCGGCAGGTCGGCGCCGGCCAGGACCACTTCCTTGATCTGC GCCAGCGCCAGCGGCGGCAGGCCGGCGATCTGGCGAGCCAGTTCGAGGGCGCGATCCAATGCCTGGCCATCC GCCGCCACCTCGCTGACCAACCCTATGGCCAGGGCCTCCGGCGCCCGTACCGTGCAACCGGTAAACAGCATG CGCAGCGCCTGGAACTTGCCCACCGCTCGCACCAGGCGCTGGGTGCCGCCGGCGCCGGGCATCACGCCGACA CGGATTTCCGGCTGGGCGAAGCGCGCCGAGGCACCGGCGACGATCAGGTCGCAGTGCATCGCCAACTCGCAG CCTCCGCCCAGGGCATGGCCCTCCACGGCGGCGATCAGCGGCTTGCGGCAGGCGGCGAGCGCCTGCCAGTGG CGCTCCACCCCGCGCTGCTGGATCTCCAGCGCGGACGCCTCCGCCAGTTCGTTGAGATCGGCGCCGGCGGCG AACGCCGTGCCATTTCCGGTGAGGACGATGACCCGGGTATCGGCGCACTCGTCGAGGCGCCGTACGTACTCC GCCAGAGCCTCGCGCAGGCGCATGTTCAGGGCGTTGAGTACTGCCGGGCGGTTCAGTCGCAACAGGGCCACG CCCTGCTCCGGCCGGTCCAGCAGCACGAGTTCGGGGCTCACCGCCCCAGGGGAGGAATCCATGGCCATCTCC AATTGCCCGGGGATTGAGTTGCACGGCGCAGGCCGTGCCATGCGGGGTTTCAGGCGCGGACGATGCCGCGCC GGACCAGCGCGTCGATCGCCTCGGCGCTCAATCCCAGTTCCGCCAGGACTTCCCGGGTGTCTCCGCCCAGTA CCGGCGGCGTGGCGCGGTAGCTGGCCGGGGTGCGCGAAAGCTTCACCGGCGAGGCGATGCCGCGATAGCCCT CGAGTTCGACGACCATCCCGCGATGGCGGGTGTGCGGGTGTTCCACCACCCGATCCACCGTGGCGATCACTC CGCAGGGCACGCCGAGACGGATCAGCAGCTCGGCCAGCTCGCGACCGTCGTGGGCCGCCAGGTAGTCCTCCA GGGCGCGCTTCAGCGCCTCGCGGTTGA