ViewGene
Locus Name:
GeneID:
Location:

GeneID:6390
TrivialName: PA14_17840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17840
PAO1 Ortholog Locus:
Sequence Length:834
Protein Length:277
Start: 1533289
Stop: 1532456
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAB51328.1| (AP003004) 2-dehydro-3-deoxygalactonate kinase [Mesorhizobium loti]
Identities = 51/162 (31%), Positives = 62/162 (38%), Gaps = 21/162 (12%)
Sequence:
ATGGCTCGCTCATTTTCCCAGGTACTCCGCTGTGCGTTTTTCCAGGAAGGCACGCATGCCCTCCTTCTGGTC
GTGGCTGTCGAACAGCAACTGGAAGGCCTTGCGCTCCAGCGCCAGGGCCTGGTCCAGCGGCAGGTCGGCGCC
GGCCAGGACCACTTCCTTGATCTGCGCCAGCGCCAGCGGCGGCAGGCCGGCGATCTGGCGAGCCAGTTCGAG
GGCGCGATCCAATGCCTGGCCATCCGCCGCCACCTCGCTGACCAACCCTATGGCCAGGGCCTCCGGCGCCCG
TACCGTGCAACCGGTAAACAGCATGCGCAGCGCCTGGAACTTGCCCACCGCTCGCACCAGGCGCTGGGTGCC
GCCGGCGCCGGGCATCACGCCGACACGGATTTCCGGCTGGGCGAAGCGCGCCGAGGCACCGGCGACGATCAG
GTCGCAGTGCATCGCCAACTCGCAGCCTCCGCCCAGGGCATGGCCCTCCACGGCGGCGATCAGCGGCTTGCG
GCAGGCGGCGAGCGCCTGCCAGTGGCGCTCCACCCCGCGCTGCTGGATCTCCAGCGCGGACGCCTCCGCCAG
TTCGTTGAGATCGGCGCCGGCGGCGAACGCCGTGCCATTTCCGGTGAGGACGATGACCCGGGTATCGGCGCA
CTCGTCGAGGCGCCGTACGTACTCCGCCAGAGCCTCGCGCAGGCGCATGTTCAGGGCGTTGAGTACTGCCGG
GCGGTTCAGTCGCAACAGGGCCACGCCCTGCTCCGGCCGGTCCAGCAGCACGAGTTCGGGGCTCACCGCCCC
AGGGGAGGAATCCATGGCCATCTCCAATTGCCCGGGGATTGA
Translation:
MARSFSQVLRCAFFQEGTHALLLVVAVEQQLEGLALQRQGLVQRQVGAGQDHFLDLRQRQRRQAGDLASQFE
GAIQCLAIRRHLADQPYGQGLRRPYRATGKQHAQRLELAHRSHQALGAAGAGHHADTDFRLGEARRGTGDDQ
VAVHRQLAASAQGMALHGGDQRLAAGGERLPVALHPALLDLQRGRLRQFVEIGAGGERRAISGEDDDPGIGA
LVEAPYVLRQSLAQAHVQGVEYCRAVQSQQGHALLRPVQQHEFGAHRPRGGIHGHLQLPGD*
AnnotationID:6391GeneID:6390
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 11:11:33
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:12598




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29887




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49392How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3420647Stop: 3421480

          
Length: 834


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGCTCGCTCATTTTCCCAGGTACTCCGCTGTGCGTTTTTCCAGGAAGGCACGCATGCCCTCCTTCTGGTC 
GTGGCTGTCGAACAGCAACTGGAAGGCCTTGCGCTCCAGCGCCAGGGCCTGGTCCAGCGGCAGGTCGGCGCC 
GGCCAGGACCACTTCCTTGATCTGCGCCAGCGCCAGCGGCGGCAGGCCGGCGATCTGGCGAGCCAGTTCGAG 
GGCGCGATCCAATGCCTGGCCATCCGCCGCCACCTCGCTGACCAACCCTATGGCCAGGGCCTCCGGCGCCCG 
TACCGTGCAACCGGTAAACAGCATGCGCAGCGCCTGGAACTTGCCCACCGCTCGCACCAGGCGCTGGGTGCC 
GCCGGCGCCGGGCATCACGCCGACACGGATTTCCGGCTGGGCGAAGCGCGCCGAGGCACCGGCGACGATCAG 
GTCGCAGTGCATCGCCAACTCGCAGCCTCCGCCCAGGGCATGGCCCTCCACGGCGGCGATCAGCGGCTTGCG 
GCAGGCGGCGAGCGCCTGCCAGTGGCGCTCCACCCCGCGCTGCTGGATCTCCAGCGCGGACGCCTCCGCCAG 
TTCGTTGAGATCGGCGCCGGCGGCGAACGCCGTGCCATTTCCGGTGAGGACGATGACCCGGGTATCGGCGCA 
CTCGTCGAGGCGCCGTACGTACTCCGCCAGAGCCTCGCGCAGGCGCATGTTCAGGGCGTTGAGTACTGCCGG 
GCGGTTCAGTCGCAACAGGGCCACGCCCTGCTCCGGCCGGTCCAGCAGCACGAGTTCGGGGCTCACCGCCCC 
AGGGGAGGAATCCATGGCCATCTCCAATTGCCCGGGGATTGA