ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6382

TrivialName: PA14_18190

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_18190

PAO1 Ortholog Locus:

Sequence Length: 1548

Protein Length: 515

Start: 1561934

Stop: 1560387

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: emb|CAD55362.1| (AL939124) probable translational initiation factor [Streptomyces coelicolor A3(2)] Identities = 108/359 (30%), Positives = 143/359 (39%), Gaps = 34/359 (9%)

Sequence:

GTGGCATCATCCATGCCTTCGCCGGCAGCCGCGAGGAAGCCCGCGAGTACCTCAAGCTCGGCTTCCGCCTCG
GCCTCGGCGGCGCGCCGACCTGGCCGCAGGCCAACCGCCTGCGCAAGGTGGCGGCGGAGCTGCCGGCCGACG
CCATCGTGCTGGAAACCGATGCGCCGGACATGGCGCCCTCGATGTATCCCGGCCAGCGCAACAGTCCGGAGC
ACCTGCCGGACATCTGCCGCGCCCTCGCCGAGCTGCGCGGGGTCGACGCCGAGGAACTGGCGGCGAGCAGCA
GCCGCAACGCCGCCGAGCTGTTCGGCTGGGACTGATCAAGCGTCGCGCAGGACTTCCGGCGCCAGTTGCGGG
TACGTCTCGCGCAACGCCTCCAGGCAGGCCGAAAGCTGCGCCGCTTCCTCCGGCAGGCGCCGAGCGAAGTCG
CTCCAGCCTTGCAGACGCAATCGCCGGGGCATCGGCACCAGGCCGCTGATGGCGTCCCAGAAGGCATCCCAG
TTGCATCCGTACCACGGCGGCAACGCCAGGGCCTCGCGCAGGCGTTCGTGCAAGCGCGCGGCGCTGTCCACG
TCCGCCAGCTCGATGGCCAGGCTCGCCGCCCGGTTCAGTTCCTCGTCCATGGAGCCTCCGCCAGCAATGCGT
CGCAACGCTCGCGCACGAACGCGCGCAAGAGGGTCACCGGGCGGGTCAACTGGGCGCGGTGGGTACACAAGA
GGTTCATCGGCGTCGCTTCGCCCTGCCACTCCGGCAGCAGCAGGCGCAGGCGCCCGGCGCGCACGTCCTCGG
CCACGTCCAGCCAGGACTTGTAGACCAGTCCCTTGCCGGCCAGGGCCCAGCGCCGCACCACGTCGGCGTCGT
CGCAGACCCGGTCGCCGGCGACCGTCAGGGTCAGGCTGCGGCGGCCCCGCTGGAACGCCCAGCGGTCGTGTA
CCCGGCCGCCGAGTTGGTAGAGCAGGCAATTGTGCTCGCGCAGGTCGTCCGGCTGGCGCGGCTCGCCGCGCT
CCGCCAGGTAGCCCGGCGCGGCGCAGAGCACTCGCCGGTTGTCCGGCGCCAGCGGCAGGGCGACCAGGCTGG
AGTCGGCCGGTGCGCCGTAGCGGATCGCCACGTCCACCGGTTGCCGGTAGAGATCGGTCACCCGGTCGCCGA
GCAGCAGGCGCAGGCTCAGTTGCGGATAGCGCGCCTGGAACTCGTCGAGCCAGGGCAGCAGCAGATTGCGGC
CGAAGTCGGAGGGCGCGGAAAGCTGCAGCACCCCGGCGATCTGGTCCTTGCCGCCCTGCAGCAACCGGCGCC
CCTCCTCCAGGCTGCGCAACGAGGCGCGGGCATGCTGGAGGAACGCGTCGCCCTCGGGAGTCAGGCGCAGGC
TGCGGGTGGAGCGGGCGAACAGGCGTACCTCCAGCTCGCTTTCCAGGCGCTTCAGCGCCGCGCTGGCCACCG
CCGGGGAAATCTCCAACTGGCGCGCGGCGGCGGACAACGAGCCGCTGTCGCTGGTGTGGACGAACACCTGGA
GGTCGTCGTAACGCAGCATTTTCAAGATTCCTTTGA

Translation:

MASSMPSPAAARKPASTSSSASASASAARRPGRRPTACARWRRSCRPTPSCWKPMRRTWRPRCIPASATVRS
TCRTSAAPSPSCAGSTPRNWRRAAAATPPSCSAGTDQASRRTSGASCGYVSRNASRQAESCAASSGRRRAKS
LQPCRRNRRGIGTRPLMASQKASQLHPYHGGNARASRRRSCKRAALSTSASSMARLAARFSSSSMEPPPAMR
RNARARTRARGSPGGSTGRGGYTRGSSASLRPATPAAAGAGARRARPRPRPARTCRPVPCRPGPSAAPRRRR
RRPGRRRPSGSGCGGPAGTPSGRVPGRRVGRAGNCARAGRPAGAARRAPPGSPARRRALAGCPAPAAGRPGW
SRPVRRSGSPRPPVAGRDRSPGRRAAGAGSVADSAPGTRRARAAADCGRSRRARKAAAPRRSGPCRPAATGA
PPPGCATRRGHAGGTRRPRESGAGCGWSGRTGVPPARFPGASAPRWPPPGKSPTGARRRTTSRCRWCGRTPG
GRRNAAFSRFL*

AnnotationID:6383 GeneID:6382

AnnotatorUID: diggins

Modification Date/Time: 2004-04-30 14:02:19

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16162

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29871

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:31977

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6382_cdd.html

URL:

GC ORFID: `49384`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `3392002`	Stop: `3393549`
Length: `1548`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGGCATCATCCATGCCTTCGCCGGCAGCCGCGAGGAAGCCCGCGAGTACCTCAAGCTCGGCTTCCGCCTCG GCCTCGGCGGCGCGCCGACCTGGCCGCAGGCCAACCGCCTGCGCAAGGTGGCGGCGGAGCTGCCGGCCGACG CCATCGTGCTGGAAACCGATGCGCCGGACATGGCGCCCTCGATGTATCCCGGCCAGCGCAACAGTCCGGAGC ACCTGCCGGACATCTGCCGCGCCCTCGCCGAGCTGCGCGGGGTCGACGCCGAGGAACTGGCGGCGAGCAGCA GCCGCAACGCCGCCGAGCTGTTCGGCTGGGACTGATCAAGCGTCGCGCAGGACTTCCGGCGCCAGTTGCGGG TACGTCTCGCGCAACGCCTCCAGGCAGGCCGAAAGCTGCGCCGCTTCCTCCGGCAGGCGCCGAGCGAAGTCG CTCCAGCCTTGCAGACGCAATCGCCGGGGCATCGGCACCAGGCCGCTGATGGCGTCCCAGAAGGCATCCCAG TTGCATCCGTACCACGGCGGCAACGCCAGGGCCTCGCGCAGGCGTTCGTGCAAGCGCGCGGCGCTGTCCACG TCCGCCAGCTCGATGGCCAGGCTCGCCGCCCGGTTCAGTTCCTCGTCCATGGAGCCTCCGCCAGCAATGCGT CGCAACGCTCGCGCACGAACGCGCGCAAGAGGGTCACCGGGCGGGTCAACTGGGCGCGGTGGGTACACAAGA GGTTCATCGGCGTCGCTTCGCCCTGCCACTCCGGCAGCAGCAGGCGCAGGCGCCCGGCGCGCACGTCCTCGG CCACGTCCAGCCAGGACTTGTAGACCAGTCCCTTGCCGGCCAGGGCCCAGCGCCGCACCACGTCGGCGTCGT CGCAGACCCGGTCGCCGGCGACCGTCAGGGTCAGGCTGCGGCGGCCCCGCTGGAACGCCCAGCGGTCGTGTA CCCGGCCGCCGAGTTGGTAGAGCAGGCAATTGTGCTCGCGCAGGTCGTCCGGCTGGCGCGGCTCGCCGCGCT CCGCCAGGTAGCCCGGCGCGGCGCAGAGCACTCGCCGGTTGTCCGGCGCCAGCGGCAGGGCGACCAGGCTGG AGTCGGCCGGTGCGCCGTAGCGGATCGCCACGTCCACCGGTTGCCGGTAGAGATCGGTCACCCGGTCGCCGA GCAGCAGGCGCAGGCTCAGTTGCGGATAGCGCGCCTGGAACTCGTCGAGCCAGGGCAGCAGCAGATTGCGGC CGAAGTCGGAGGGCGCGGAAAGCTGCAGCACCCCGGCGATCTGGTCCTTGCCGCCCTGCAGCAACCGGCGCC CCTCCTCCAGGCTGCGCAACGAGGCGCGGGCATGCTGGAGGAACGCGTCGCCCTCGGGAGTCAGGCGCAGGC TGCGGGTGGAGCGGGCGAACAGGCGTACCTCCAGCTCGCTTTCCAGGCGCTTCAGCGCCGCGCTGGCCACCG CCGGGGAAATCTCCAACTGGCGCGCGGCGGCGGACAACGAGCCGCTGTCGCTGGTGTGGACGAACACCTGGA GGTCGTCGTAACGCAGCATTTTCAAGATTCCTTTGA