ViewGene
Locus Name:
GeneID:
Location:

GeneID:6381
TrivialName: PA14_18220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18220
PAO1 Ortholog Locus:
Sequence Length:1062
Protein Length:353
Start: 1562390
Stop: 1563451
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
ATGGCGGCCGGCTCAGTCGCGCAGCTTGAGTTGCCGGGGGACGGCGTGCAGGCCCGGCCGGTAGTCGTTCTC
CTCGACCGCGCGGAGCGCCAGTTCGAGGGCGTTGGCGGCGATCAGCGCGTGCTGCTGGTAGATCGAGTTGAC
CTTCAGCGGCACGAAGTCGAGCAACTGGGTGTCGCCGAAGGTCGCCACCCGCAAGCcTTCGGGCCAACCGTC
GGCGCGCGCCTGGAACACATCGAAGACGCCTTCGAGGAGTACATAGGCAGTGGTCACCAGGGCGTCGGGCAG
GTAGCCCAGGCGCTCGAGCAATTGCTCCATCAGGCGGCGTCCGCACTCGCGGCTGAACACCTCGGCATGCTC
GACGATGACCTCGCCGCGGAAGTCCTTCAGCGCCTGGCGGAAGCCGGCGGCGCGGTCGTGGCTGATGATCAG
GTCCGCCCGCGCGCCGAGCAGGGCGATATGGCGCGGCGCCGGTTGCAACAGGGTTTCGGTGAGGCGGCGCGC
GGCGTCCTGGTCGTCGCTGATCACCGAGGCGAAGCGCTGCGGGTCGAGCTGGCGGTCGATGGCCACCACCGG
CAGGCCTTCGGCGACCAGCCGGGCATGGGTATCATCCCCGGCCGGCAGGCAACTGGCGACGATCAGCGCGTC
GCAGCGGCGCGCGCGGAACAGGTTGACCACCTGGCGCTCGGTCTCCGGCTCGTCGTCGGAGCAGGCGATCAG
CAACTGGTAGCCGCGCGCCCGGGCGCCTTGTTCGAGTTGCTTGGCGAGGCGGGCGTAGCTGGGGTTTTCCAG
GTCCGGGAGGATGAAGCCGAGGGTGCGGGTCTGCCCGCGGCGCAGGCCGGCGGCCTGCTGGTCCGGCTGGTA
GCCGTGTTCCTCGACCACGGCAAGCACGCGCTCGACGGTGGCGGCGCTGATGCGCCGCTGGGCGGCCTTGCC
ATTGATGACGTAGCTGGCGGTGGTCACCGAGACCCCGGCCAGGCGGGCGATATCACTGAGTTTCAAACCGAT
CTCTACTGGAGGCGACGACAAGTTGGGCTTCAAGGATCAATCATTATCGGGTAA
Translation:
MAAGSVAQLELPGDGVQARPVVVLLDRAERQFEGVGGDQRVLLVDRVDLQRHEVEQLGVAEGRHPQAFGPTV
GARLEHIEDAFEEYIGSGHQGVGQVAQALEQLLHQAASALAAEHLGMLDDDLAAEVLQRLAEAGGAVVADDQ
VRPRAEQGDMARRRLQQGFGEAARGVLVVADHRGEALRVELAVDGHHRQAFGDQPGMGIIPGRQATGDDQRV
AAARAEQVDHLALGLRLVVGAGDQQLVAARPGALFELLGEAGVAGVFQVREDEAEGAGLPAAQAGGLLVRLV
AVFLDHGKHALDGGGADAPLGGLAIDDVAGGGHRDPGQAGDITEFQTDLYWRRRQVGLQGSIIIG*
AnnotationID:6382GeneID:6381
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 06:06:48
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:12581




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29869




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49383How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3391546Stop: 3390485

          
Length: 1062


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGCGGCCGGCTCAGTCGCGCAGCTTGAGTTGCCGGGGGACGGCGTGCAGGCCCGGCCGGTAGTCGTTCTC 
CTCGACCGCGCGGAGCGCCAGTTCGAGGGCGTTGGCGGCGATCAGCGCGTGCTGCTGGTAGATCGAGTTGAC 
CTTCAGCGGCACGAAGTCGAGCAACTGGGTGTCGCCGAAGGTCGCCACCCGCAAGCcTTCGGGCCAACCGTC 
GGCGCGCGCCTGGAACACATCGAAGACGCCTTCGAGGAGTACATAGGCAGTGGTCACCAGGGCGTCGGGCAG 
GTAGCCCAGGCGCTCGAGCAATTGCTCCATCAGGCGGCGTCCGCACTCGCGGCTGAACACCTCGGCATGCTC 
GACGATGACCTCGCCGCGGAAGTCCTTCAGCGCCTGGCGGAAGCCGGCGGCGCGGTCGTGGCTGATGATCAG 
GTCCGCCCGCGCGCCGAGCAGGGCGATATGGCGCGGCGCCGGTTGCAACAGGGTTTCGGTGAGGCGGCGCGC 
GGCGTCCTGGTCGTCGCTGATCACCGAGGCGAAGCGCTGCGGGTCGAGCTGGCGGTCGATGGCCACCACCGG 
CAGGCCTTCGGCGACCAGCCGGGCATGGGTATCATCCCCGGCCGGCAGGCAACTGGCGACGATCAGCGCGTC 
GCAGCGGCGCGCGCGGAACAGGTTGACCACCTGGCGCTCGGTCTCCGGCTCGTCGTCGGAGCAGGCGATCAG 
CAACTGGTAGCCGCGCGCCCGGGCGCCTTGTTCGAGTTGCTTGGCGAGGCGGGCGTAGCTGGGGTTTTCCAG 
GTCCGGGAGGATGAAGCCGAGGGTGCGGGTCTGCCCGCGGCGCAGGCCGGCGGCCTGCTGGTCCGGCTGGTA 
GCCGTGTTCCTCGACCACGGCAAGCACGCGCTCGACGGTGGCGGCGCTGATGCGCCGCTGGGCGGCCTTGCC 
ATTGATGACGTAGCTGGCGGTGGTCACCGAGACCCCGGCCAGGCGGGCGATATCACTGAGTTTCAAACCGAT 
CTCTACTGGAGGCGACGACAAGTTGGGCTTCAAGGATCAATCATTATCGGGTAA