ViewGene
Locus Name:
GeneID:
Location:

GeneID:6379
TrivialName: PA14_18270
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18270
PAO1 Ortholog Locus:
Sequence Length:3327
Protein Length:1108
Start: 1567535
Stop: 1570860
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
Inactivated 2/01/06. PA14_18270 (GeneID 6379) and PA14_18290 (GeneID 6377) replaced by PA14_18275 (GeneID 7380). Homology: gb|AAG06948.1|AE004777_1 (AE004777) phosphotransferase system, fructose-specific IIBC component [Pseudomonas aeruginosa PAO1]
Identities = 127/127 (100%), Positives = 127/127 (100%)
Sequence:
ATGAAACTAGCGATCGTCACCGCCTGCCCTGGCGGACAGGTCACCAGCGTGCTCGCCGCGCGCCTGCTGCGG
GGCGCCGCCGAGCGCCTGGGCTGGGAAACCTGCGTCGAGGCGAATGCCGGGTCGAGGCCCGAGGGCGAACTG
AGCGCCGAACAGATCGCCGAAGCCGACTGGGTCCTGCTGGTCGGCGTCGAGCCGCTGGCGGCGGCGCGTTTC
GTCGGCAAGCCGGTGTATCGCGCGCGTCCCGCCGAGGCGCTGGCCGATCCGCGCGCCTTCCTCCAGCGGGCC
GCCGCCCTGGCGAGTGTGGAGGTCGCCGGGGACGAGGCCGGCCtGGTTGCGCCGGAGGCCGGAGCGGCACCG
CGGATCGTCGCGGTGACCgccCTGTCCGACCGGCGTGGCGCATACCTTCATGGCCGCCGAGGCGTTGCAGCT
CGCGGCGGGGCAACTGGGCTTCGCGTTGCAGGTCGAGACCCAGGGCTCGGTCGGCGCGCGCAACCCGCTCGA
CCCGGCGGACATCGCCGCCGCCGACGTGGTCCTGCTGGCCGCCGACATCGACGTGGACACGGCCCGTTTCGC
CGGCAAGAAGATCTACCGTTGCGGCACCGGCGTGGCCCTCAAGCAGGCCCGCGCGACGCTCGAGCGGGCGCT
GGCGGAAGGGCAGGTCGAGAGCGCGGGCGCAGCCAGCGCGGTGGTCGCCAGGGACGAGAAGCGCGGGGTGTA
CAAGCACCTGCTGACCGGGGTGTCGTTCATGTTGCCGATGGTGGTCGCGGGCGGCCTGCTGATCGCCCTGTC
GCTGGCCTTCGGCATCGATGCCTACAAGCAGCCGGGCAGCCTGGCGGCGGTGCTGAGGACGGTCGGCGACAC
GGCTTTCGTCCTGATGGTGCCGATGCTCGCCGGCTACATCGCCTATTCCATCGCCGACCGCCCGGGCCTGGC
GCCGGGCATGCTCGGCGGCCTGCTCGCCGGGACCCTCGGCGCCGGGTTCATCGGCGGGATAGTCGCCGGCTT
CATCGCCGGCTATGCGGCGCGGGCCATCAGCCACGGGCTGAGGCTGCCGGCGAGCCTGGAAGCGCTGAAGCC
GATCCTGGTCATCCCGTTGCTGGCCAGCCTGGTCACCGGCCTGCTGATGCTCTACGTGGTCGGCAAGCCGGT
GGCCGGGATGCTCGCGGCACTGACCGGGTTCCTCGACGGCATGGGTACCTCCAATGCCATCCTCCTCGGCCT
GCTGCTCGGCGGGATGATGTGCGTCGACCTCGGCGGACCGGTCAACAAGGCCGCCTACGCCTTTTCCGTCGG
CCTGCTCTCGTCGCACAGCTACGCGCCGATGGCGGCGGTGATGGCGGCGGGCATGGTGCCGCCGATCGGCAT
GGGCCTGGCGACCCTGCTGGCGCGGCGCAAGTTCGCCGAGAGCGAGCGGCAGGCCGGCAAGGCAGCCTCGGT
GCTGGGGCTGTGCTTCATCTCCGAAGGCGCGATCCCGTTCGCCGCCAAGGACCCGTTGCGGGTGATCCCGGC
GAGCATCGCCGGCGGCGCGCTGACCGGCGCCCTGTCGATGTATTTCGGCTGCAAGTTGCAGGCGCCTCACGG
CGGGTTGTTCGTGATGCTGGTGCCCAACGCGATCAACCACGCCCTGGCGTACCTGCTGGCGATCGTCGCCGG
CAGCCTGCTTACCGGGCTGCTCTACGCCGTGCTCAAGCGCGGCGCCGAGCCGGGACTGGCGTTGGGGACCTC
GTCCTCGCGGGAGCCGGCGGCTGGCGGATAGCCGCGAGGCGGTCATGCGCCCTACGCCACCTGAGCGACGTG
GCAGGGGGTAGGGCGAATAACGCCGCAGGCGTTATCCGCCGATACTCCGGCGAACCGGCGGATAACCGCAGC
GGTTATTCGCCCCAGCGGTCGATCCGACCTGGGGCGGCCTCAGGCCTGGCGCAACAGGCGCACGCCATCTTC
CTGTGCGAGGCTGGCCTCGTTGATCGGCAACGAGCAGGACTGCCCGCGTCCCATCGGGTAGTAGTGGAAGCC
GTGGCGGGCCATGCGCTCGGGGTCGTAGAGGTTGCGCCCGTCGAAGATCACCGGGGCCTTCAGGCGCTCCTT
GAGCAGCTCGAAATCCGGTGCCTTGAATTGCTGCCACTCGGTGCAGATGACCAGCGCATCGGCGCCTCCCAG
GGTCGCCTCGGGGGTGCCCATCAGGCTCAGGCGTTCGTCGTGGCCATAGAGCCGCTGGGTTTCCTGCATGGC
TTCGGGATCGTAGGCGCGCACCTGCGCGCCGTGGCGCCAGAGCGCTTCCATCAGTTCGCGGCTGGGCGCGTC
GCGCATGTCGTCGGTGTTCGGCTTGAAGGCCAGGCCCCAAAGGGCGAAGGTCTTGCCGCGCAGGTCGCCGTC
GTAGAACACCCGGATGCGTTCGAACAGCTTGTGCTTCTGCCGCCGGTTGATCGCTTCCACTGCCTGCAACAG
GTCGCTGGAGCAATGCGCCTGCTCGGCGCTGTGGATCAGCGCGCGCATGTCCTTGGGGAAGCAGGAGCCGCC
GTAGCCGCAGCCGGGGTAGATGAAGTGGTAGCCGATCCGCGGGTCGGCGCCGATGCCCTGGCGCACCGCCTC
GATGTCGGCGCCGAGGTGTTCGGCCAGTTCGGCGATCTGGTTGATGAAGCTGATCTTGGTCGCCAGCATGCC
GTTCGCCGCGTACTTGGTCAGTTCGGCGCTGCGCAGGCCCATGAACAGCATGCGGTCGTGGTTGCGGTTGAA
CGGCTCGTAGAGTTCGCGCATCACCTGGCGCACCTCTTCGTTGTCGCAGCCGACCACGATGCGGTCCGGGCG
CCGGCAGTCGGCGACGGCGGAGCCTTCCTTGAGGAATTCCGGGTTGGAGACGATCTCGAATTCCAGCTCGCG
TCCGTCGGCTTCCAGGCGCCGCTCGATGTGCGCGCGCAGGCGGTCGCCGGTGCCTACCGGGACGGTCGATTT
CTCCACCACGATGACGGGCTTGCGGCGATGCTCGGCGATGGCATCGGCCACCGCGAAGACCGCGCCGAGATC
GGCCGCGCCGTCCTCGCCAGGCGGGGTACCGACCGCGATGAACTGCACCCGGCCGTGTTCCACGGCGAGGCG
CGCATCGCTGCTGAAACGCAGGCGGCCGCTGTCCAGGCCTTCGCGCAGCAAGGCGTCGAGCCCGGGTTCGTA
GATGCTGGCGAGGCCCTGCGCGAGGCGTTCGACCTTGTTCCGGTCGATGTCCATGCACAGTACATCGTGGCC
CACTTCGGCGAGGACGGCGGCCTGCACCAGTCCTACATAGCCACTGCCGAATACGCTGATCTTCATGGTGCT
TTCCTCGACGGATGA
Translation:
MKLAIVTACPGGQVTSVLAARLLRGAAERLGWETCVEANAGSRPEGELSAEQIAEADWVLLVGVEPLAAARF
VGKPVYRARPAEALADPRAFLQRAAALASVEVAGDEAGLVAPEAGAAPRIVAVTALSDRRGAYLHGRRGVAA
RGGATGLRVAGRDPGLGRRAQPARPGGHRRRRRGPAGRRHRRGHGPFRRQEDLPLRHRRGPQAGPRDARAGA
GGRAGRERGRSQRGGRQGREARGVQAPADRGVVHVADGGRGRPADRPVAGLRHRCLQAAGQPGGGAEDGRRH
GFRPDGADARRLHRLFHRRPPGPGAGHARRPARRDPRRRVHRRDSRRLHRRLCGAGHQPRAEAAGEPGSAEA
DPGHPVAGQPGHRPADALRGRQAGGRDARGTDRVPRRHGYLQCHPPRPAARRDDVRRPRRTGQQGRLRLFRR
PALVAQLRADGGGDGGGHGAADRHGPGDPAGAAQVRRERAAGRQGSLGAGAVLHLRRRDPVRRQGPVAGDPG
EHRRRRADRRPVDVFRLQVAGASRRVVRDAGAQRDQPRPGVPAGDRRRQPAYRAALRRAQARRRAGTGVGDL
VLAGAGGWRIAARRSCALRHLSDVAGGRANNAAGVIRRYSGEPADNRSGYSPQRSIRPGAASGLAQQAHAIF
LCEAGLVDRQRAGLPASHRVVVEAVAGHALGVVEVAPVEDHRGLQALLEQLEIRCLELLPLGADDQRIGASQ
GRLGGAHQAQAFVVAIEPLGFLHGFGIVGAHLRAVAPERFHQFAAGRVAHVVGVRLEGQAPKGEGLAAQVAV
VEHPDAFEQLVLLPPVDRFHCLQQVAGAMRLLGAVDQRAHVLGEAGAAVAAAGVDEVVADPRVGADALAHRL
DVGAEVFGQFGDLVDEADLGRQHAVRRVLGQFGAAQAHEQHAVVVAVERLVEFAHHLAHLFVVAADHDAVRA
PAVGDGGAFLEEFRVGDDLEFQLASVGFQAPLDVRAQAVAGAYRDGRFLHHDDGLAAMLGDGIGHREDRAEI
GRAVLARRGTDRDELHPAVFHGEARIAAETQAAAVQAFAQQGVEPGFVDAGEALREAFDLVPVDVHAQYIVA
HFGEDGGLHQSYIATAEYADLHGAFLDG*
AnnotationID:6380GeneID:6379
AnnotatorUID: danlee
Modification Date/Time: 2006-02-01 16:04:10
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1445
Secondary Functional Category(ies):carbon compound metabolism
EC Number:
Status:INACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1445, FrwB, Phosphotransferase system fructose-specific component IIB 
[Carbohydrate transport and metabolism]
CD-Length = 122 residues,  95.9% aligned
Score = 72.3 bits (177), Expect = 6e-13
Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 1/117 (0%)






   
Genomic Context:






   
Comment:
Inactivated 2/01/06.  PA14_18270 (GeneID 6379) and PA14_18290 (GeneID 6377) replaced by PA14_18275 (GeneID 7380).


















    ReferenceID:12578




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29865




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31986




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6379_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6379
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7981
                           PA3560_tr
                           translation of PA3560
                           1230
                           19.10
                           21.54
                           767
                           615.0
     

     
     
199168
                           gb|AAG06948.1|AE004777_1
                           (AE004777) phosphotransferase system, fructose-specific IIBC component [Pseudomonas aeruginosa PAO1]
                           1230
                           19.10
                           21.54
                           767
                           615.0
     

     
     
199169
                           gb|AAN66420.1|AE016269_7
                           (AE016777) phosphotransferase system, fructose-specific IIBC component [Pseudomonas putida KT2440]
                           1196
                           16.63
                           21.90
                           704
                           285.0
     

     
     
199170
                           gb|AAO54490.1|
                           (AE016859) phosphotransferase system, fructose-specific IIBC component [Pseudomonas syringae pv. tomato str. DC3000]
                           1215
                           16.04
                           20.74
                           738
                           255.0
     

     






      

          
GC ORFID: 49381How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3386401Stop: 3383075

          
Length: 3327


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3560 translation of PA3560Homolog Bit Score 245.0

          
Other Homologs:  t_PA3560 translation of PA3560 (BLASTP 245), psyr_15may02_Scaffold15_revised_gene2496 related to: gi|15598756|ref|NP_252250.1| (NC_002516) phosphotransferase system, fructose-specific IIBC component [Pseudomonas aeruginosa] pir||H83199 phosphotransferase system, fructose-specific IIBC component PA3560 [imported] - Pseudomonas aeruginosa -TRUNCATED- (BLASTP 115)

          
GC ORF Sequence

           
ATGAAACTAGCGATCGTCACCGCCTGCCCTGGCGGACAGGTCACCAGCGTGCTCGCCGCGCGCCTGCTGCGG 
GGCGCCGCCGAGCGCCTGGGCTGGGAAACCTGCGTCGAGGCGAATGCCGGGTCGAGGCCCGAGGGCGAACTG 
AGCGCCGAACAGATCGCCGAAGCCGACTGGGTCCTGCTGGTCGGCGTCGAGCCGCTGGCGGCGGCGCGTTTC 
GTCGGCAAGCCGGTGTATCGCGCGCGTCCCGCCGAGGCGCTGGCCGATCCGCGCGCCTTCCTCCAGCGGGCC 
GCCGCCCTGGCGAGTGTGGAGGTCGCCGGGGACGAGGCCGGCCtGGTTGCGCCGGAGGCCGGAGCGGCACCG 
CGGATCGTCGCGGTGACCgccCTGTCCGACCGGCGTGGCGCATACCTTCATGGCCGCCGAGGCGTTGCAGCT 
CGCGGCGGGGCAACTGGGCTTCGCGTTGCAGGTCGAGACCCAGGGCTCGGTCGGCGCGCGCAACCCGCTCGA 
CCCGGCGGACATCGCCGCCGCCGACGTGGTCCTGCTGGCCGCCGACATCGACGTGGACACGGCCCGTTTCGC 
CGGCAAGAAGATCTACCGTTGCGGCACCGGCGTGGCCCTCAAGCAGGCCCGCGCGACGCTCGAGCGGGCGCT 
GGCGGAAGGGCAGGTCGAGAGCGCGGGCGCAGCCAGCGCGGTGGTCGCCAGGGACGAGAAGCGCGGGGTGTA 
CAAGCACCTGCTGACCGGGGTGTCGTTCATGTTGCCGATGGTGGTCGCGGGCGGCCTGCTGATCGCCCTGTC 
GCTGGCCTTCGGCATCGATGCCTACAAGCAGCCGGGCAGCCTGGCGGCGGTGCTGAGGACGGTCGGCGACAC 
GGCTTTCGTCCTGATGGTGCCGATGCTCGCCGGCTACATCGCCTATTCCATCGCCGACCGCCCGGGCCTGGC 
GCCGGGCATGCTCGGCGGCCTGCTCGCCGGGACCCTCGGCGCCGGGTTCATCGGCGGGATAGTCGCCGGCTT 
CATCGCCGGCTATGCGGCGCGGGCCATCAGCCACGGGCTGAGGCTGCCGGCGAGCCTGGAAGCGCTGAAGCC 
GATCCTGGTCATCCCGTTGCTGGCCAGCCTGGTCACCGGCCTGCTGATGCTCTACGTGGTCGGCAAGCCGGT 
GGCCGGGATGCTCGCGGCACTGACCGGGTTCCTCGACGGCATGGGTACCTCCAATGCCATCCTCCTCGGCCT 
GCTGCTCGGCGGGATGATGTGCGTCGACCTCGGCGGACCGGTCAACAAGGCCGCCTACGCCTTTTCCGTCGG 
CCTGCTCTCGTCGCACAGCTACGCGCCGATGGCGGCGGTGATGGCGGCGGGCATGGTGCCGCCGATCGGCAT 
GGGCCTGGCGACCCTGCTGGCGCGGCGCAAGTTCGCCGAGAGCGAGCGGCAGGCCGGCAAGGCAGCCTCGGT 
GCTGGGGCTGTGCTTCATCTCCGAAGGCGCGATCCCGTTCGCCGCCAAGGACCCGTTGCGGGTGATCCCGGC 
GAGCATCGCCGGCGGCGCGCTGACCGGCGCCCTGTCGATGTATTTCGGCTGCAAGTTGCAGGCGCCTCACGG 
CGGGTTGTTCGTGATGCTGGTGCCCAACGCGATCAACCACGCCCTGGCGTACCTGCTGGCGATCGTCGCCGG 
CAGCCTGCTTACCGGGCTGCTCTACGCCGTGCTCAAGCGCGGCGCCGAGCCGGGACTGGCGTTGGGGACCTC 
GTCCTCGCGGGAGCCGGCGGCTGGCGGATAGCCGCGAGGCGGTCATGCGCCCTACGCCACCTGAGCGACGTG 
GCAGGGGGTAGGGCGAATAACGCCGCAGGCGTTATCCGCCGATACTCCGGCGAACCGGCGGATAACCGCAGC 
GGTTATTCGCCCCAGCGGTCGATCCGACCTGGGGCGGCCTCAGGCCTGGCGCAACAGGCGCACGCCATCTTC 
CTGTGCGAGGCTGGCCTCGTTGATCGGCAACGAGCAGGACTGCCCGCGTCCCATCGGGTAGTAGTGGAAGCC 
GTGGCGGGCCATGCGCTCGGGGTCGTAGAGGTTGCGCCCGTCGAAGATCACCGGGGCCTTCAGGCGCTCCTT 
GAGCAGCTCGAAATCCGGTGCCTTGAATTGCTGCCACTCGGTGCAGATGACCAGCGCATCGGCGCCTCCCAG 
GGTCGCCTCGGGGGTGCCCATCAGGCTCAGGCGTTCGTCGTGGCCATAGAGCCGCTGGGTTTCCTGCATGGC 
TTCGGGATCGTAGGCGCGCACCTGCGCGCCGTGGCGCCAGAGCGCTTCCATCAGTTCGCGGCTGGGCGCGTC 
GCGCATGTCGTCGGTGTTCGGCTTGAAGGCCAGGCCCCAAAGGGCGAAGGTCTTGCCGCGCAGGTCGCCGTC 
GTAGAACACCCGGATGCGTTCGAACAGCTTGTGCTTCTGCCGCCGGTTGATCGCTTCCACTGCCTGCAACAG 
GTCGCTGGAGCAATGCGCCTGCTCGGCGCTGTGGATCAGCGCGCGCATGTCCTTGGGGAAGCAGGAGCCGCC 
GTAGCCGCAGCCGGGGTAGATGAAGTGGTAGCCGATCCGCGGGTCGGCGCCGATGCCCTGGCGCACCGCCTC 
GATGTCGGCGCCGAGGTGTTCGGCCAGTTCGGCGATCTGGTTGATGAAGCTGATCTTGGTCGCCAGCATGCC 
GTTCGCCGCGTACTTGGTCAGTTCGGCGCTGCGCAGGCCCATGAACAGCATGCGGTCGTGGTTGCGGTTGAA 
CGGCTCGTAGAGTTCGCGCATCACCTGGCGCACCTCTTCGTTGTCGCAGCCGACCACGATGCGGTCCGGGCG 
CCGGCAGTCGGCGACGGCGGAGCCTTCCTTGAGGAATTCCGGGTTGGAGACGATCTCGAATTCCAGCTCGCG 
TCCGTCGGCTTCCAGGCGCCGCTCGATGTGCGCGCGCAGGCGGTCGCCGGTGCCTACCGGGACGGTCGATTT 
CTCCACCACGATGACGGGCTTGCGGCGATGCTCGGCGATGGCATCGGCCACCGCGAAGACCGCGCCGAGATC 
GGCCGCGCCGTCCTCGCCAGGCGGGGTACCGACCGCGATGAACTGCACCCGGCCGTGTTCCACGGCGAGGCG 
CGCATCGCTGCTGAAACGCAGGCGGCCGCTGTCCAGGCCTTCGCGCAGCAAGGCGTCGAGCCCGGGTTCGTA 
GATGCTGGCGAGGCCCTGCGCGAGGCGTTCGACCTTGTTCCGGTCGATGTCCATGCACAGTACATCGTGGCC 
CACTTCGGCGAGGACGGCGGCCTGCACCAGTCCTACATAGCCACTGCCGAATACGCTGATCTTCATGGTGCT 
TTCCTCGACGGATGA