ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6378

TrivialName: PA14_18280

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_18280

PAO1 Ortholog Locus:

Sequence Length: 1734

Protein Length: 577

Start: 1569307

Stop: 1567575

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: TRUE

Missense Discrepancy: TRUE

Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens] Identities = 155/551 (28%), Positives = 189/551 (34%), Gaps = 102/551 (18%)

Sequence:

ATGACCGCCTCGCGGCTATCCGCCAGCCGCCGGCTCCCGCGAGGACGAGGTCCCCAACGCCAGTCCCGGCTC
GGCGCCGCGCTTGAGCACGGCGTAGAGCAGCCCGGTAAGCAGGCTGCCGGCGACGATCGCCAGCAGGTACGC
CAGGGCGTGGTTGATCGCGTTGGGCACCAGCATCACGAACAACCCGCCGTGAGGCGCCTGCAACTTGCAGCC
GAAATACATCGACAGGGCGCCGGTCAGCGCGCCGCCGGCGATGCTCGCCGGGATCACCCGCAACGGGTCCTT
GGCGGCGAACGGGATCGCGCCTTCGGAGATGAAGCACAGCCCCAGCACCGAGGCTGCCTTGCCGGCCTGCCG
CTCGCTCTCGGCGAACTTGCGCCGCGCCAGCAGGGTCGCCAGGCCCATGCCGATCGGCGGCACCATGCCCGC
CGCCATCACCGCCGCCATCGGCGCGTAGCTGTGCGACGAGAGCAGGCCGACGGAAAAGGCGTAGGCGGCCTT
GTTGACCGGTCCGCCGAGGTCGACGCACATCATCCCGCCGAGCAGCAGGCCGAGGAGGATGGCATTGGAGGT
ACCCATGCCGTCGAGGAACCCGGTCAGTGCCGCGAGCATCCCGGCCACCGGCTTGCCGACCACGTAGAGCAT
CAGCAGGCCGGTGACCAGGCTGGCCAGCAACGGGATGACCAGGATCGGCTTCAGCGCTTCCAGGCTCGCCGG
CAGCCTCAGCCCGTGGCTGATGGCCCGCGCCGCATAGCCGGCGATGAAGCCGGCGACTATCCCGCCGATGAA
CCCGGCGCCGAGGGTCCCGGCGAGCAGGCCGCCGAGCATGCCCGGCGCCAGGCCCGGGCGGTCGGCGATGGA
ATAGGCGATGTAGCCGGCGAGCATCGGCACCATCAGGACGAAAGCCGTGTCGCCGACCGTCCTCAGCACCGC
CGCCAGGCTGCCCGGCTGCTTGTAGGCATCGATGCCGAAGGCCAGCGACAGGGCGATCAGCAGGCCGCCCGC
GACCACCATCGGCAACATGAACGACACCCCGGTCAGCAGGTGCTTGTACACCCCGCGCTTCTCGTCCCTGGC
GACCACCGCGCTGGCTGCGCCCGCGCTCTCGACCTGCCCTTCCGCCAGCGCCCGCTCGAGCGTCGCGCGGGC
CTGCTTGAGGGCCACGCCGGTGCCGCAACGGTAGATCTTCTTGCCGGCGAAACGGGCCGTGTCCACGTCGAT
GTCGGCGGCCAGCAGGACCACGTCGGCGGCGGCGATGTCCGCCGGGTCGAGCGGGTTGCGCGCGCCGACCGA
GCCCTGGGTCTCGACCTGCAACGCGAAGCCCAGTTGCCCCGCCGCGAGCTGCAACGCCTCGGCGGCCATGAA
GGTATGCGCCACGCCGGTCGGACAGggcGGTCACCGCGACGATCCGCGGTGCCGCTCCGGCCTCCGGCGCAA
CCaGGCCGGCCTCGTCCCCGGCGACCTCCACACTCGCCAGGGCGGCGGCCCGCTGGAGGAAGGCGCGCGGAT
CGGCCAGCGCCTCGGCGGGACGCGCGCGATACACCGGCTTGCCGACGAAACGCGCCGCCGCCAGCGGCTCGA
CGCCGACCAGCAGGACCCAGTCGGCTTCGGCGATCTGTTCGGCGCTCAGTTCGCCCTCGGGCCTCGACCCGG
CATTCGCCTCGACGCAGGTTTCCCAGCCCAGGCGCTCGGCGGCGCCCCGCAGCAGGCGCGCGGCGAGCACGC
TGGTGA

Translation:

MTASRLSASRRLPRGRGPQRQSRLGAALEHGVEQPGKQAAGDDRQQVRQGVVDRVGHQHHEQPAVRRLQLAA
EIHRQGAGQRAAGDARRDHPQRVLGGERDRAFGDEAQPQHRGCLAGLPLALGELAPRQQGRQAHADRRHHAR
RHHRRHRRVAVRREQADGKGVGGLVDRSAEVDAHHPAEQQAEEDGIGGTHAVEEPGQCREHPGHRLADHVEH
QQAGDQAGQQRDDQDRLQRFQARRQPQPVADGPRRIAGDEAGDYPADEPGAEGPGEQAAEHARRQARAVGDG
IGDVAGEHRHHQDESRVADRPQHRRQAARLLVGIDAEGQRQGDQQAARDHHRQHERHPGQQVLVHPALLVPG
DHRAGCARALDLPFRQRPLERRAGLLEGHAGAATVDLLAGETGRVHVDVGGQQDHVGGGDVRRVERVARADR
ALGLDLQREAQLPRRELQRLGGHEGMRHAGRTGRSPRRSAVPLRPPAQPGRPRPRRPPHSPGRRPAGGRRAD
RPAPRRDARDTPACRRNAPPPAARRRPAGPSRLRRSVRRSVRPRASTRHSPRRRFPSPGARRRPAAGARRAR
W*

AnnotationID:6379 GeneID:6378

AnnotatorUID: diggins

Modification Date/Time: 2004-05-02 11:11:28

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:12576

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29863

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:31985

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6378_cdd.html

URL:

GC ORFID: `49380`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `3384628`	Stop: `3386361`
Length: `1734`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGACCGCCTCGCGGCTATCCGCCAGCCGCCGGCTCCCGCGAGGACGAGGTCCCCAACGCCAGTCCCGGCTC GGCGCCGCGCTTGAGCACGGCGTAGAGCAGCCCGGTAAGCAGGCTGCCGGCGACGATCGCCAGCAGGTACGC CAGGGCGTGGTTGATCGCGTTGGGCACCAGCATCACGAACAACCCGCCGTGAGGCGCCTGCAACTTGCAGCC GAAATACATCGACAGGGCGCCGGTCAGCGCGCCGCCGGCGATGCTCGCCGGGATCACCCGCAACGGGTCCTT GGCGGCGAACGGGATCGCGCCTTCGGAGATGAAGCACAGCCCCAGCACCGAGGCTGCCTTGCCGGCCTGCCG CTCGCTCTCGGCGAACTTGCGCCGCGCCAGCAGGGTCGCCAGGCCCATGCCGATCGGCGGCACCATGCCCGC CGCCATCACCGCCGCCATCGGCGCGTAGCTGTGCGACGAGAGCAGGCCGACGGAAAAGGCGTAGGCGGCCTT GTTGACCGGTCCGCCGAGGTCGACGCACATCATCCCGCCGAGCAGCAGGCCGAGGAGGATGGCATTGGAGGT ACCCATGCCGTCGAGGAACCCGGTCAGTGCCGCGAGCATCCCGGCCACCGGCTTGCCGACCACGTAGAGCAT CAGCAGGCCGGTGACCAGGCTGGCCAGCAACGGGATGACCAGGATCGGCTTCAGCGCTTCCAGGCTCGCCGG CAGCCTCAGCCCGTGGCTGATGGCCCGCGCCGCATAGCCGGCGATGAAGCCGGCGACTATCCCGCCGATGAA CCCGGCGCCGAGGGTCCCGGCGAGCAGGCCGCCGAGCATGCCCGGCGCCAGGCCCGGGCGGTCGGCGATGGA ATAGGCGATGTAGCCGGCGAGCATCGGCACCATCAGGACGAAAGCCGTGTCGCCGACCGTCCTCAGCACCGC CGCCAGGCTGCCCGGCTGCTTGTAGGCATCGATGCCGAAGGCCAGCGACAGGGCGATCAGCAGGCCGCCCGC GACCACCATCGGCAACATGAACGACACCCCGGTCAGCAGGTGCTTGTACACCCCGCGCTTCTCGTCCCTGGC GACCACCGCGCTGGCTGCGCCCGCGCTCTCGACCTGCCCTTCCGCCAGCGCCCGCTCGAGCGTCGCGCGGGC CTGCTTGAGGGCCACGCCGGTGCCGCAACGGTAGATCTTCTTGCCGGCGAAACGGGCCGTGTCCACGTCGAT GTCGGCGGCCAGCAGGACCACGTCGGCGGCGGCGATGTCCGCCGGGTCGAGCGGGTTGCGCGCGCCGACCGA GCCCTGGGTCTCGACCTGCAACGCGAAGCCCAGTTGCCCCGCCGCGAGCTGCAACGCCTCGGCGGCCATGAA GGTATGCGCCACGCCGGTCGGACAGggcGGTCACCGCGACGATCCGCGGTGCCGCTCCGGCCTCCGGCGCAA CCaGGCCGGCCTCGTCCCCGGCGACCTCCACACTCGCCAGGGCGGCGGCCCGCTGGAGGAAGGCGCGCGGAT CGGCCAGCGCCTCGGCGGGACGCGCGCGATACACCGGCTTGCCGACGAAACGCGCCGCCGCCAGCGGCTCGA CGCCGACCAGCAGGACCCAGTCGGCTTCGGCGATCTGTTCGGCGCTCAGTTCGCCCTCGGGCCTCGACCCGG CATTCGCCTCGACGCAGGTTTCCCAGCCCAGGCGCTCGGCGGCGCCCCGCAGCAGGCGCGCGGCGAGCACGC TGGTGA