ViewGene

Locus Name:
GeneID:
Location:

GeneID:6372
TrivialName: PA14_18460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18460
PAO1 Ortholog Locus:
Sequence Length:1278
Protein Length:425
Start: 1583992
Stop: 1585269
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAC74057.1| (AP005046) hypothetical protein [Streptomyces avermitilis MA-4680]
Identities = 62/195 (31%), Positives = 80/195 (41%), Gaps = 25/195 (12%)
Sequence:
GTGCGCCCGCTTCCCGCCACGCCCTCAACTTCCCCCTTCGCGGCTGAACACCCGCGTCACTTCGCCGCCGAG
GCGGAAACTGTTGAACGGCTCGCGGTCCTTCTTCGCCTCGAGCATCTTCGGCTCGCAGCGGTAGAGGGCGCA
GTAGGGCTCCAGCCAGGCGTACTTGTTGTCGACCTTGAGGTCGGTCATGTCCTGGTCCTCGCCGGTCTTCTC
CTCGAAGGTTTCCTCGTCGTCGACTCCCTTCATCACCCGCTCGGCCAGGCGCTGCAGGGCGCCGTGGTTCTC
CTGGCGCAGGTCGACGCCGTTGACCTGGGCGAACGCGGCGATCATCGCCAGCGGCGGCAGCGCATAGTTGTG
GTAGGCGAGGGCGCGCTGGCGGCGCTTGAGTTCGTTGGGCAGGAAGCCCTGCTCGTCGACCTGGTTGGCGGC
GACCTTGAACTCGCTCACCGCCCAGTCGAAGAGGTCGCGGCGGTTGGTCACCACCGCGGTGGACATCACCGA
CCAGGCCGCCCAGTAGGAATGGTTGTTGATCTTCTTCAGCGGCAGGCCGCTCCAGTCGCGGACTACCTGGGT
GCCGAGCCGGGCGAACCAGTCCTCGATTTCCCGGCTCTGCTCGGCGTGGGCCGCGAGCGGCCGCGAGCTGGA
GAACTTCAGGCGCATGTAGGCGCCGGAGAGGCTGCCCAGCGCCCATTTGCGCATGGACTTGCCGGTGTGGTT
GAAGTCGTCGCTCTGCAGGGCGCCGGCGCGGGCCCAGGCGCTCATCCAGTTCAGTGCGCAGGCCAGGTCGCC
GTCGCGGCCGCTGCGCATGTACTGGGTGACCAGCTTGGTGGCGCCGCGCTCCATGTCGGTGATGTCCTTGAT
CTGCGAGCGGAAGGTCTTCTCCGCCTTGACGTTGAGGGTCGCCCGCGCCGAATCGGAGCCTTCGTACTTGCT
GGTGAAGACCAGGCTGCCGGTATACGGCGGCGGCACCGCGGGGCAACTGCCGGCGCTGCCCTTGCGCTCGCC
GACCGCCGCGTAGTAGCCGGGCGGGGGTACCAGGTCGGCGGCCTGGCTGACCTGGCTGGCGAGCAATGCCGC
GGCGAGGGCGCCGGGCAGGGCGATACGGATCAGGTGGGACGTTTTCATCGTTTACCTCCCGGCCACCGACTG
GCTGGCCTTGGCGGGCGCCGCCTGGCAGATGCTGGCCTGGACCTCCAGGCCCTGGGGCATGTCCTCCGGCGC
TTCGATTTCCAGGGAAAGGAACTGCTGGTCGGCCCAGTCGCTGTCGTTGCGTAG
Translation:
MRPLPATPSTSPFAAEHPRHFAAEAETVERLAVLLRLEHLRLAAVEGAVGLQPGVLVVDLEVGHVLVLAGLL
LEGFLVVDSLHHPLGQALQGAVVLLAQVDAVDLGERGDHRQRRQRIVVVGEGALAALEFVGQEALLVDLVGG
DLELAHRPVEEVAAVGHHRGGHHRPGRPVGMVVDLLQRQAAPVADYLGAEPGEPVLDFPALLGVGRERPRAG
ELQAHVGAGEAAQRPFAHGLAGVVEVVALQGAGAGPGAHPVQCAGQVAVAAAAHVLGDQLGGAALHVGDVLD
LRAEGLLRLDVEGRPRRIGAFVLAGEDQAAGIRRRHRGATAGAALALADRRVVAGRGYQVGGLADLAGEQCR
GEGAGQGDTDQVGRFHRLPPGHRLAGLGGRRLADAGLDLQALGHVLRRFDFQGKELLVGPVAVVA*
AnnotationID:6373GeneID:6372
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 04:04:37
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:16156
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29852
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49374How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 3369943Stop: 3368666
Length: 1278
Start Codon: GTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGCGCCCGCTTCCCGCCACGCCCTCAACTTCCCCCTTCGCGGCTGAACACCCGCGTCACTTCGCCGCCGAG
GCGGAAACTGTTGAACGGCTCGCGGTCCTTCTTCGCCTCGAGCATCTTCGGCTCGCAGCGGTAGAGGGCGCA
GTAGGGCTCCAGCCAGGCGTACTTGTTGTCGACCTTGAGGTCGGTCATGTCCTGGTCCTCGCCGGTCTTCTC
CTCGAAGGTTTCCTCGTCGTCGACTCCCTTCATCACCCGCTCGGCCAGGCGCTGCAGGGCGCCGTGGTTCTC
CTGGCGCAGGTCGACGCCGTTGACCTGGGCGAACGCGGCGATCATCGCCAGCGGCGGCAGCGCATAGTTGTG
GTAGGCGAGGGCGCGCTGGCGGCGCTTGAGTTCGTTGGGCAGGAAGCCCTGCTCGTCGACCTGGTTGGCGGC
GACCTTGAACTCGCTCACCGCCCAGTCGAAGAGGTCGCGGCGGTTGGTCACCACCGCGGTGGACATCACCGA
CCAGGCCGCCCAGTAGGAATGGTTGTTGATCTTCTTCAGCGGCAGGCCGCTCCAGTCGCGGACTACCTGGGT
GCCGAGCCGGGCGAACCAGTCCTCGATTTCCCGGCTCTGCTCGGCGTGGGCCGCGAGCGGCCGCGAGCTGGA
GAACTTCAGGCGCATGTAGGCGCCGGAGAGGCTGCCCAGCGCCCATTTGCGCATGGACTTGCCGGTGTGGTT
GAAGTCGTCGCTCTGCAGGGCGCCGGCGCGGGCCCAGGCGCTCATCCAGTTCAGTGCGCAGGCCAGGTCGCC
GTCGCGGCCGCTGCGCATGTACTGGGTGACCAGCTTGGTGGCGCCGCGCTCCATGTCGGTGATGTCCTTGAT
CTGCGAGCGGAAGGTCTTCTCCGCCTTGACGTTGAGGGTCGCCCGCGCCGAATCGGAGCCTTCGTACTTGCT
GGTGAAGACCAGGCTGCCGGTATACGGCGGCGGCACCGCGGGGCAACTGCCGGCGCTGCCCTTGCGCTCGCC
GACCGCCGCGTAGTAGCCGGGCGGGGGTACCAGGTCGGCGGCCTGGCTGACCTGGCTGGCGAGCAATGCCGC
GGCGAGGGCGCCGGGCAGGGCGATACGGATCAGGTGGGACGTTTTCATCGTTTACCTCCCGGCCACCGACTG
GCTGGCCTTGGCGGGCGCCGCCTGGCAGATGCTGGCCTGGACCTCCAGGCCCTGGGGCATGTCCTCCGGCGC
TTCGATTTCCAGGGAAAGGAACTGCTGGTCGGCCCAGTCGCTGTCGTTGCGTAG