ViewGene
Locus Name:
GeneID:
Location:

GeneID:6363
TrivialName: PA14_18940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18940
PAO1 Ortholog Locus:
Sequence Length:807
Protein Length:268
Start: 1633369
Stop: 1634175
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAC72207.1| (AP005039) hypothetical protein [Streptomyces avermitilis MA-4680]
Identities = 50/195 (25%), Positives = 76/195 (38%), Gaps = 10/195 (5%)
Sequence:
GTGCATCAGCCGTGCGGCGCCGACGATGGCGTCCACCGGGCAGGCCTGGATGCACTTGGTGCAGCCGATGCA
TTCGGCCTCGCGGATGTAGGCTACCCGCGGCGGGGTTTCCTCGGCGGCGTCGAGCGGCTCGGGCTCCAGGTC
GAGCAGGTCGGCGAGGGCGCGGATGGTCGCTTCGCCGCCCGGCGGGCACTTGTTGATCTTGTCGCCGGCGGC
GATCGCCTCGGCGTAGGGCTTGCAGCCGGGGTAGCCACACTGGCCGCACTGGGTCTGCGGCAACAGGGCGTT
GACCTGCTCGGCGACCGGGTCGCCCTGGACGCGGAAGCGCACCGCCGCATAGCCGAGCAGCGCACCGCCGGC
CAGGCAGATCGGCAGCAGCGCGCCGATCGCCAGGAACACGCCGTTCATGGCCGGACCAACCCGCTGAAGCCC
ATGAACGCCAGCGACATCAGGCCGGCGGTGATCATGCCGATGGCCGCGCCGCGGAACGGCGCCGGCACGTCG
GCGATGGCGATGCGCTCGCGCAGGGCGGCGAACAGCACCAGCACCAGGGAAAAGCCCAGCCCGGCGCCGAAG
CCCTGGGTAGTGGCCTGGAGGAAGCCGTATTCAGCCTTGTTGGCGTTGAGCAGGGCGACGCCGAGGACGATG
CAATTGGTGGTGATCAGCGGCAGGAAGATGCCGAGCACCCGGTACAGCAGCGGGCTGGTCTTCTTCACCAGC
ATCTCGGTGAACTGCACCACCACCGCGATCACCAGGATGAAGCCGATGGTGCGCAGGTACTCCAGGTCCAGC
GGGCGCAGCACGTAG
Translation:
MHQPCGADDGVHRAGLDALGAADAFGLADVGYPRRGFLGGVERLGLQVEQVGEGADGRFAARRALVDLVAGG
DRLGVGLAAGVATLAALGLRQQGVDLLGDRVALDAEAHRRIAEQRTAGQADRQQRADRQEHAVHGRTNPLKP
MNASDIRPAVIMPMAAPRNGAGTSAMAMRSRRAANSTSTREKPSPAPKPWVVAWRKPYSALLALSRATPRTM
QLVVISGRKMPSTRYSSGLVFFTSISVNCTTTAITRMKPMVRRYSRSSGRST*
AnnotationID:6364GeneID:6363
AnnotatorUID: diggins
Modification Date/Time: 2005-04-19 12:12:17
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:16148




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29834




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49365How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3320565Stop: 3319759

          
Length: 807


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGCATCAGCCGTGCGGCGCCGACGATGGCGTCCACCGGGCAGGCCTGGATGCACTTGGTGCAGCCGATGCA 
TTCGGCCTCGCGGATGTAGGCTACCCGCGGCGGGGTTTCCTCGGCGGCGTCGAGCGGCTCGGGCTCCAGGTC 
GAGCAGGTCGGCGAGGGCGCGGATGGTCGCTTCGCCGCCCGGCGGGCACTTGTTGATCTTGTCGCCGGCGGC 
GATCGCCTCGGCGTAGGGCTTGCAGCCGGGGTAGCCACACTGGCCGCACTGGGTCTGCGGCAACAGGGCGTT 
GACCTGCTCGGCGACCGGGTCGCCCTGGACGCGGAAGCGCACCGCCGCATAGCCGAGCAGCGCACCGCCGGC 
CAGGCAGATCGGCAGCAGCGCGCCGATCGCCAGGAACACGCCGTTCATGGCCGGACCAACCCGCTGAAGCCC 
ATGAACGCCAGCGACATCAGGCCGGCGGTGATCATGCCGATGGCCGCGCCGCGGAACGGCGCCGGCACGTCG 
GCGATGGCGATGCGCTCGCGCAGGGCGGCGAACAGCACCAGCACCAGGGAAAAGCCCAGCCCGGCGCCGAAG 
CCCTGGGTAGTGGCCTGGAGGAAGCCGTATTCAGCCTTGTTGGCGTTGAGCAGGGCGACGCCGAGGACGATG 
CAATTGGTGGTGATCAGCGGCAGGAAGATGCCGAGCACCCGGTACAGCAGCGGGCTGGTCTTCTTCACCAGC 
ATCTCGGTGAACTGCACCACCACCGCGATCACCAGGATGAAGCCGATGGTGCGCAGGTACTCCAGGTCCAGC 
GGGCGCAGCACGTAG